Wall clock time and date at job start Tue Mar 31 2020 11:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47374 * 2 1 4 4 H 1.08997 * 109.46735 * 305.00012 * 3 2 1 5 5 C 1.53001 * 109.47000 * 65.00133 * 3 2 1 6 6 C 1.52994 * 109.47083 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47061 * 299.99597 * 6 5 3 8 8 C 1.53001 * 109.46843 * 60.00256 * 7 6 5 9 9 H 1.08997 * 109.47475 * 59.99776 * 8 7 6 10 10 C 1.53000 * 109.47353 * 179.97438 * 8 7 6 11 11 N 1.46903 * 109.46894 * 295.00237 * 10 8 7 12 12 C 1.46895 * 110.99958 * 293.94842 * 11 10 8 13 13 C 1.50697 * 109.47429 * 170.00439 * 12 11 10 14 14 H 1.07991 * 120.00449 * 119.72389 * 13 12 11 15 15 C 1.37885 * 119.99686 * 300.00221 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48490 * 109.47339 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47239 * 120.00108 * 17 15 13 20 20 H 1.48504 * 109.46636 * 239.99667 * 17 15 13 21 21 C 1.46901 * 110.99651 * 169.99598 * 11 10 8 22 22 C 1.50700 * 109.46928 * 189.99549 * 21 11 10 23 23 C 1.38228 * 119.61779 * 95.00628 * 22 21 11 24 24 C 1.38621 * 119.16394 * 179.97438 * 23 22 21 25 25 C 1.38675 * 118.42288 * 359.97438 * 24 23 22 26 26 C 1.38186 * 119.15926 * 0.02562 * 25 24 23 27 27 N 1.31860 * 119.61949 * 274.72659 * 22 21 11 28 28 C 1.52991 * 109.47166 * 185.00006 * 3 2 1 29 29 H 1.08998 * 109.47263 * 59.99893 * 1 2 3 30 30 H 1.08997 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46921 * 299.99866 * 1 2 3 32 32 H 1.09003 * 109.47389 * 239.99893 * 2 1 3 33 33 H 1.09006 * 109.47553 * 120.00020 * 2 1 3 34 34 H 1.09002 * 109.46906 * 59.99881 * 5 3 2 35 35 H 1.08998 * 109.46925 * 300.00150 * 5 3 2 36 36 H 1.08996 * 109.47371 * 179.97438 * 6 5 3 37 37 H 1.09002 * 109.47655 * 59.99962 * 6 5 3 38 38 H 1.08997 * 109.47548 * 300.00374 * 7 6 5 39 39 H 1.08997 * 109.47049 * 179.97438 * 7 6 5 40 40 H 1.08994 * 109.47308 * 175.00037 * 10 8 7 41 41 H 1.09003 * 109.46677 * 54.99673 * 10 8 7 42 42 H 1.09001 * 109.47144 * 50.00329 * 12 11 10 43 43 H 1.09006 * 109.47296 * 290.00548 * 12 11 10 44 44 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 45 45 H 1.09001 * 109.47497 * 309.99990 * 21 11 10 46 46 H 1.09008 * 109.47226 * 69.99903 * 21 11 10 47 47 H 1.08004 * 120.41988 * 359.94829 * 23 22 21 48 48 H 1.08002 * 120.79190 * 179.97438 * 24 23 22 49 49 H 1.07998 * 120.42548 * 179.97438 * 25 24 23 50 50 H 1.07998 * 119.61965 * 180.02562 * 26 25 24 51 51 H 1.09007 * 109.47254 * 60.00276 * 28 3 2 52 52 H 1.08997 * 109.47578 * 300.00129 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1448 3.5692 1.3071 7 6 3.6697 3.5715 1.1812 8 6 4.0744 2.8875 -0.1262 9 1 3.6394 3.4262 -0.9680 10 6 5.5991 2.8903 -0.2526 11 7 6.0779 4.2739 -0.3734 12 6 5.6219 4.8807 -1.6311 13 6 5.9171 6.3584 -1.6118 14 1 6.5658 6.7893 -2.3600 15 6 5.3634 7.1593 -0.6355 16 7 4.5734 6.6346 0.2756 17 14 5.7354 8.9897 -0.6071 18 1 6.6445 9.3275 -1.7316 19 1 4.4700 9.7542 -0.7462 20 1 6.3878 9.3422 0.6795 21 6 7.5410 4.3365 -0.2587 22 6 7.9745 5.7749 -0.1406 23 6 8.1808 6.3257 1.1103 24 6 8.5799 7.6497 1.2080 25 6 8.7580 8.3734 0.0386 26 6 8.5329 7.7553 -1.1766 27 7 8.1580 6.4920 -1.2318 28 6 3.5648 1.4443 -0.1257 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0700 1.5874 2.1492 35 1 0.5490 2.1252 1.3969 36 1 1.8561 4.0566 2.2383 37 1 1.7099 4.1081 0.4654 38 1 4.1046 3.0327 2.0229 39 1 4.0326 4.5993 1.1805 40 1 5.8914 2.3260 -1.1381 41 1 6.0379 2.4300 0.6328 42 1 4.5486 4.7260 -1.7410 43 1 6.1434 4.4169 -2.4684 44 1 4.1836 7.1981 0.9622 45 1 7.8600 3.7869 0.6269 46 1 7.9943 3.8920 -1.1449 47 1 8.0324 5.7323 2.0004 48 1 8.7481 8.1067 2.1720 49 1 9.0681 9.4072 0.0771 50 1 8.6698 8.3118 -2.0920 51 1 3.8532 0.9570 -1.0572 52 1 3.9995 0.9053 0.7160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183048232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:36 Heat of formation + Delta-G solvation = 43.138033 kcal Electronic energy + Delta-G solvation = -28519.581879 eV Core-core repulsion = 25098.084521 eV Total energy + Delta-G solvation = -3421.497358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.41027 -38.69671 -36.27847 -33.61249 -32.38855 -31.53349 -31.17920 -30.07775 -28.68569 -27.27472 -25.66342 -23.81426 -22.97584 -22.44687 -22.01090 -21.23495 -20.21022 -19.42381 -18.91392 -16.27005 -15.89778 -15.33338 -14.99561 -14.71806 -14.64882 -14.58604 -14.39268 -13.92742 -13.46653 -13.25231 -13.10392 -12.97025 -12.61018 -12.53788 -12.32683 -12.09300 -11.94255 -11.58237 -11.42888 -11.35659 -11.12193 -10.94061 -10.83046 -10.64419 -10.59989 -10.52398 -10.38070 -10.36330 -10.18727 -9.73137 -9.50214 -9.31985 -9.22802 -9.05351 -8.82258 -8.37808 -7.95844 -7.66731 -6.78792 -5.87504 -3.74535 2.18048 2.38254 3.38609 3.46015 3.48433 4.52901 4.70659 4.93252 4.99388 5.13531 5.22697 5.35791 5.40166 5.55758 5.58387 5.63793 5.68713 5.74228 5.76431 5.84169 5.91062 5.98904 6.02026 6.05474 6.07992 6.09112 6.11986 6.18275 6.20453 6.28415 6.29739 6.34922 6.39959 6.47986 6.49149 6.51310 6.65494 6.69539 6.73379 6.84296 6.87674 7.01455 7.10443 7.14225 7.21356 7.28684 7.41806 7.72965 7.77272 8.06080 8.23790 8.48223 8.72629 9.15697 9.19657 9.70690 11.14961 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.003989 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.552945 B = 7017.198854 C = 7491.291730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.066 0.934 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.070 4.070 9 H 0.072 0.928 10 C 0.063 3.937 11 N -0.494 5.494 12 C 0.191 3.809 13 C -0.494 4.494 14 H 0.078 0.922 15 C 0.081 3.919 16 N -0.832 5.832 17 Si 0.861 3.139 18 H -0.268 1.268 19 H -0.299 1.299 20 H -0.277 1.277 21 C 0.117 3.883 22 C 0.180 3.820 23 C -0.161 4.161 24 C -0.104 4.104 25 C -0.187 4.187 26 C 0.053 3.947 27 N -0.397 5.397 28 C -0.108 4.108 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.033 0.967 39 H 0.128 0.872 40 H 0.009 0.991 41 H 0.051 0.949 42 H 0.035 0.965 43 H -0.021 1.021 44 H 0.252 0.748 45 H 0.061 0.939 46 H 0.027 0.973 47 H 0.115 0.885 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.134 0.866 51 H 0.050 0.950 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 -8.102 2.773 8.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.102 4.102 4 H 0.085 0.915 5 C -0.149 4.149 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.088 4.088 9 H 0.090 0.910 10 C -0.066 4.066 11 N -0.218 5.218 12 C 0.067 3.933 13 C -0.534 4.534 14 H 0.095 0.905 15 C -0.125 4.125 16 N -0.467 5.467 17 Si 0.691 3.309 18 H -0.193 1.193 19 H -0.227 1.227 20 H -0.203 1.203 21 C -0.012 4.012 22 C 0.045 3.955 23 C -0.182 4.182 24 C -0.130 4.130 25 C -0.207 4.207 26 C -0.105 4.105 27 N -0.107 5.107 28 C -0.147 4.147 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.146 0.854 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.053 0.947 43 H -0.003 1.003 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.045 0.955 47 H 0.133 0.867 48 H 0.129 0.871 49 H 0.128 0.872 50 H 0.151 0.849 51 H 0.069 0.931 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.368 -8.223 2.519 8.708 hybrid contribution 0.333 1.219 0.430 1.335 sum -1.035 -7.004 2.949 7.670 Atomic orbital electron populations 1.21817 0.96363 1.00906 1.01909 1.21582 0.95484 0.97167 1.01426 1.21134 0.95964 0.94799 0.98350 0.91545 1.21641 0.99410 0.97031 0.96852 1.21482 0.98031 0.94768 1.00840 1.21675 0.93144 1.05670 0.94683 1.21016 0.94456 0.93575 0.99802 0.90978 1.22039 0.95474 0.91060 0.97990 1.62369 1.06033 1.13387 1.40053 1.19804 0.95522 0.94139 0.83880 1.21421 1.26971 0.92007 1.12963 0.90456 1.24814 0.95279 0.96713 0.95716 1.69891 1.29171 1.33827 1.13763 0.87158 0.77324 0.87695 0.78750 1.19261 1.22743 1.20269 1.20656 0.90786 0.90896 0.98841 1.20460 0.91780 0.95306 0.87944 1.21472 1.02820 0.95638 0.98269 1.21057 0.99956 0.94547 0.97472 1.21681 1.04708 0.99902 0.94440 1.22145 0.99235 0.92775 0.96378 1.67802 1.03924 1.06855 1.32090 1.21660 0.94532 0.97917 1.00548 0.92904 0.93386 0.92544 0.92446 0.92403 0.92835 0.93030 0.93282 0.92438 0.94815 0.85441 0.97343 0.93044 0.94682 1.00296 0.93822 0.92012 0.95470 0.86735 0.87104 0.87239 0.84891 0.93102 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 37.16 0.36 -1.20 16 2 C -0.12 -1.34 5.40 -26.73 -0.14 -1.49 16 3 C -0.08 -1.13 2.19 -90.62 -0.20 -1.33 16 4 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 5 C -0.11 -1.54 4.96 -26.73 -0.13 -1.67 16 6 C -0.11 -1.88 5.92 -26.73 -0.16 -2.03 16 7 C -0.11 -2.12 5.09 -26.73 -0.14 -2.25 16 8 C -0.07 -1.24 2.12 -90.59 -0.19 -1.43 16 9 H 0.07 1.47 6.17 -51.93 -0.32 1.15 16 10 C 0.06 1.17 4.35 -3.82 -0.02 1.15 16 11 N -0.49 -10.66 3.37 -237.51 -0.80 -11.46 16 12 C 0.19 4.63 4.77 -4.98 -0.02 4.60 16 13 C -0.49 -12.83 5.38 -34.44 -0.19 -13.01 16 14 H 0.08 2.10 5.95 -52.49 -0.31 1.79 16 15 C 0.08 2.12 4.50 -17.82 -0.08 2.04 16 16 N -0.83 -21.85 10.89 55.43 0.60 -21.25 16 17 Si 0.86 21.12 24.40 -169.99 -4.15 16.97 16 18 H -0.27 -6.40 6.32 56.52 0.36 -6.05 16 19 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 20 H -0.28 -6.78 6.53 56.52 0.37 -6.41 16 21 C 0.12 2.39 5.28 -4.98 -0.03 2.36 16 22 C 0.18 3.90 4.26 -82.58 -0.35 3.55 16 23 C -0.16 -3.28 9.72 -39.44 -0.38 -3.67 16 24 C -0.10 -2.02 9.70 -39.28 -0.38 -2.40 16 25 C -0.19 -3.67 7.36 -39.44 -0.29 -3.96 16 26 C 0.05 1.10 7.27 -17.55 -0.13 0.98 16 27 N -0.40 -8.93 6.38 -9.47 -0.06 -8.99 16 28 C -0.11 -1.59 4.49 -26.71 -0.12 -1.71 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.65 6.56 -51.93 -0.34 0.31 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.13 2.85 5.76 -51.93 -0.30 2.55 16 40 H 0.01 0.16 8.12 -51.93 -0.42 -0.26 16 41 H 0.05 0.90 7.93 -51.93 -0.41 0.49 16 42 H 0.04 0.90 6.00 -51.93 -0.31 0.59 16 43 H -0.02 -0.52 8.06 -51.93 -0.42 -0.93 16 44 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 45 H 0.06 1.12 7.83 -51.93 -0.41 0.71 16 46 H 0.03 0.56 8.06 -51.92 -0.42 0.14 16 47 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 48 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 49 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 50 H 0.13 2.58 7.96 -52.49 -0.42 2.16 16 51 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 52 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -26.31 374.43 -10.90 -37.22 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -9.55 Total: 3.33 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -2.59 Total: -21.47 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.26 Total: -41.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.15 Total: 16.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.31 -10.90 -37.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183048232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.355 kcal (2) G-P(sol) polarization free energy of solvation -26.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds