Wall clock time and date at job start Tue Mar 31 2020 11:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47374 * 2 1 4 4 H 1.08997 * 109.46735 * 305.00012 * 3 2 1 5 5 C 1.53001 * 109.47000 * 65.00133 * 3 2 1 6 6 C 1.52994 * 109.47083 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47061 * 299.99597 * 6 5 3 8 8 C 1.53001 * 109.46843 * 60.00256 * 7 6 5 9 9 H 1.08997 * 109.47475 * 59.99776 * 8 7 6 10 10 C 1.53000 * 109.47353 * 179.97438 * 8 7 6 11 11 N 1.46903 * 109.46894 * 295.00237 * 10 8 7 12 12 C 1.46895 * 110.99958 * 293.94842 * 11 10 8 13 13 C 1.50697 * 109.47429 * 170.00439 * 12 11 10 14 14 H 1.07991 * 120.00449 * 119.72389 * 13 12 11 15 15 C 1.37885 * 119.99686 * 300.00221 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48490 * 109.47339 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47239 * 120.00108 * 17 15 13 20 20 H 1.48504 * 109.46636 * 239.99667 * 17 15 13 21 21 C 1.46901 * 110.99651 * 169.99598 * 11 10 8 22 22 C 1.50700 * 109.46928 * 189.99549 * 21 11 10 23 23 C 1.38228 * 119.61779 * 95.00628 * 22 21 11 24 24 C 1.38621 * 119.16394 * 179.97438 * 23 22 21 25 25 C 1.38675 * 118.42288 * 359.97438 * 24 23 22 26 26 C 1.38186 * 119.15926 * 0.02562 * 25 24 23 27 27 N 1.31860 * 119.61949 * 274.72659 * 22 21 11 28 28 C 1.52991 * 109.47166 * 185.00006 * 3 2 1 29 29 H 1.08998 * 109.47263 * 59.99893 * 1 2 3 30 30 H 1.08997 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46921 * 299.99866 * 1 2 3 32 32 H 1.09003 * 109.47389 * 239.99893 * 2 1 3 33 33 H 1.09006 * 109.47553 * 120.00020 * 2 1 3 34 34 H 1.09002 * 109.46906 * 59.99881 * 5 3 2 35 35 H 1.08998 * 109.46925 * 300.00150 * 5 3 2 36 36 H 1.08996 * 109.47371 * 179.97438 * 6 5 3 37 37 H 1.09002 * 109.47655 * 59.99962 * 6 5 3 38 38 H 1.08997 * 109.47548 * 300.00374 * 7 6 5 39 39 H 1.08997 * 109.47049 * 179.97438 * 7 6 5 40 40 H 1.08994 * 109.47308 * 175.00037 * 10 8 7 41 41 H 1.09003 * 109.46677 * 54.99673 * 10 8 7 42 42 H 1.09001 * 109.47144 * 50.00329 * 12 11 10 43 43 H 1.09006 * 109.47296 * 290.00548 * 12 11 10 44 44 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 45 45 H 1.09001 * 109.47497 * 309.99990 * 21 11 10 46 46 H 1.09008 * 109.47226 * 69.99903 * 21 11 10 47 47 H 1.08004 * 120.41988 * 359.94829 * 23 22 21 48 48 H 1.08002 * 120.79190 * 179.97438 * 24 23 22 49 49 H 1.07998 * 120.42548 * 179.97438 * 25 24 23 50 50 H 1.07998 * 119.61965 * 180.02562 * 26 25 24 51 51 H 1.09007 * 109.47254 * 60.00276 * 28 3 2 52 52 H 1.08997 * 109.47578 * 300.00129 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1448 3.5692 1.3071 7 6 3.6697 3.5715 1.1812 8 6 4.0744 2.8875 -0.1262 9 1 3.6394 3.4262 -0.9680 10 6 5.5991 2.8903 -0.2526 11 7 6.0779 4.2739 -0.3734 12 6 5.6219 4.8807 -1.6311 13 6 5.9171 6.3584 -1.6118 14 1 6.5658 6.7893 -2.3600 15 6 5.3634 7.1593 -0.6355 16 7 4.5734 6.6346 0.2756 17 14 5.7354 8.9897 -0.6071 18 1 6.6445 9.3275 -1.7316 19 1 4.4700 9.7542 -0.7462 20 1 6.3878 9.3422 0.6795 21 6 7.5410 4.3365 -0.2587 22 6 7.9745 5.7749 -0.1406 23 6 8.1808 6.3257 1.1103 24 6 8.5799 7.6497 1.2080 25 6 8.7580 8.3734 0.0386 26 6 8.5329 7.7553 -1.1766 27 7 8.1580 6.4920 -1.2318 28 6 3.5648 1.4443 -0.1257 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0700 1.5874 2.1492 35 1 0.5490 2.1252 1.3969 36 1 1.8561 4.0566 2.2383 37 1 1.7099 4.1081 0.4654 38 1 4.1046 3.0327 2.0229 39 1 4.0326 4.5993 1.1805 40 1 5.8914 2.3260 -1.1381 41 1 6.0379 2.4300 0.6328 42 1 4.5486 4.7260 -1.7410 43 1 6.1434 4.4169 -2.4684 44 1 4.1836 7.1981 0.9622 45 1 7.8600 3.7869 0.6269 46 1 7.9943 3.8920 -1.1449 47 1 8.0324 5.7323 2.0004 48 1 8.7481 8.1067 2.1720 49 1 9.0681 9.4072 0.0771 50 1 8.6698 8.3118 -2.0920 51 1 3.8532 0.9570 -1.0572 52 1 3.9995 0.9053 0.7160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183048232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:35 Heat of formation + Delta-G solvation = 31.414691 kcal Electronic energy + Delta-G solvation = -28520.090242 eV Core-core repulsion = 25098.084521 eV Total energy + Delta-G solvation = -3422.005720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02060 -40.00196 -37.82787 -34.87316 -34.22940 -33.07637 -32.69874 -31.56131 -29.86639 -29.09219 -27.16725 -25.33189 -24.36340 -24.03504 -23.51326 -22.56690 -21.79107 -20.59392 -20.39174 -18.17758 -17.49177 -16.96602 -16.64238 -16.29720 -16.14248 -15.93992 -15.56524 -15.47966 -14.84196 -14.72466 -14.47028 -14.40847 -14.11149 -14.01449 -13.93151 -13.47275 -13.39968 -13.15542 -12.79145 -12.76419 -12.57673 -12.38815 -12.31945 -12.19103 -12.13539 -11.97882 -11.71212 -11.66043 -11.53701 -11.35316 -11.15131 -10.90398 -10.67225 -10.61213 -10.49521 -10.09594 -9.66218 -9.36735 -8.50025 -7.84491 -5.76542 0.57763 0.79830 1.41584 1.46956 1.50329 2.54267 3.12809 3.33088 3.77732 3.84295 3.90623 4.01488 4.09339 4.12965 4.21336 4.27387 4.44047 4.44840 4.50229 4.55930 4.57107 4.65629 4.67710 4.70181 4.79252 4.82847 4.85420 4.92083 4.93841 4.97093 5.05483 5.08927 5.12985 5.14630 5.16815 5.19936 5.26226 5.31368 5.43243 5.45903 5.48907 5.53569 5.56120 5.61214 5.62828 5.69820 5.84918 5.89587 6.18288 6.27964 6.38732 6.67062 6.93835 7.17958 7.57990 7.70562 9.15382 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.003989 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.552945 B = 7017.198854 C = 7491.291730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.082 4.082 4 H 0.050 0.950 5 C -0.103 4.103 6 C -0.110 4.110 7 C -0.110 4.110 8 C -0.062 4.062 9 H 0.036 0.964 10 C 0.063 3.937 11 N -0.501 5.501 12 C 0.206 3.794 13 C -0.502 4.502 14 H 0.062 0.938 15 C 0.060 3.940 16 N -0.845 5.845 17 Si 0.891 3.109 18 H -0.261 1.261 19 H -0.315 1.315 20 H -0.270 1.270 21 C 0.116 3.884 22 C 0.163 3.837 23 C -0.166 4.166 24 C -0.104 4.104 25 C -0.192 4.192 26 C 0.045 3.955 27 N -0.425 5.425 28 C -0.101 4.101 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.033 0.967 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.011 0.989 41 H 0.069 0.931 42 H 0.012 0.988 43 H -0.035 1.035 44 H 0.246 0.754 45 H 0.086 0.914 46 H 0.021 0.979 47 H 0.129 0.871 48 H 0.141 0.859 49 H 0.137 0.863 50 H 0.142 0.858 51 H 0.055 0.945 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -9.197 4.393 10.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.101 4.101 4 H 0.068 0.932 5 C -0.141 4.141 6 C -0.148 4.148 7 C -0.147 4.147 8 C -0.081 4.081 9 H 0.055 0.945 10 C -0.065 4.065 11 N -0.225 5.225 12 C 0.081 3.919 13 C -0.541 4.541 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.480 5.480 17 Si 0.721 3.279 18 H -0.185 1.185 19 H -0.245 1.245 20 H -0.196 1.196 21 C -0.013 4.013 22 C 0.027 3.973 23 C -0.186 4.186 24 C -0.130 4.130 25 C -0.212 4.212 26 C -0.113 4.113 27 N -0.135 5.135 28 C -0.139 4.139 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.029 0.971 41 H 0.088 0.912 42 H 0.030 0.970 43 H -0.017 1.017 44 H 0.055 0.945 45 H 0.105 0.895 46 H 0.039 0.961 47 H 0.147 0.853 48 H 0.159 0.841 49 H 0.155 0.845 50 H 0.160 0.840 51 H 0.074 0.926 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.972 -9.320 4.133 10.242 hybrid contribution 0.327 1.602 -0.078 1.637 sum -0.645 -7.718 4.054 8.742 Atomic orbital electron populations 1.21811 0.95505 1.01877 1.01744 1.21527 0.96204 0.95228 1.02142 1.21105 0.95012 0.96373 0.97575 0.93172 1.21572 1.00273 0.94849 0.97379 1.21413 0.96690 0.96772 0.99879 1.21524 0.94437 1.03578 0.95212 1.20903 0.93807 0.95372 0.98037 0.94512 1.22122 0.96048 0.89540 0.98772 1.62191 1.06972 1.15161 1.38159 1.19498 0.93922 0.93766 0.84743 1.21334 1.27243 0.92812 1.12724 0.92014 1.25059 0.95431 0.98264 0.95700 1.70019 1.30010 1.33875 1.14132 0.86710 0.76548 0.85591 0.79098 1.18525 1.24457 1.19579 1.20755 0.89855 0.90994 0.99670 1.20675 0.92396 0.95825 0.88371 1.21742 1.02119 0.96439 0.98327 1.21482 0.98502 0.94173 0.98840 1.22011 1.03993 1.01241 0.93918 1.22470 0.98698 0.92513 0.97586 1.67749 1.05069 1.07730 1.32992 1.21585 0.95426 0.95455 1.01390 0.93381 0.91869 0.92446 0.91999 0.91407 0.91686 0.91618 0.93107 0.94776 0.93974 0.89123 0.97137 0.91216 0.96970 1.01714 0.94478 0.89534 0.96067 0.85273 0.84143 0.84530 0.84036 0.92608 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.67 71.98 0.70 -2.03 16 2 C -0.11 -2.27 5.40 30.59 0.17 -2.10 16 3 C -0.08 -2.09 2.19 -10.79 -0.02 -2.11 16 4 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 5 C -0.10 -2.67 4.96 30.59 0.15 -2.52 16 6 C -0.11 -3.63 5.92 30.59 0.18 -3.45 16 7 C -0.11 -4.08 5.09 30.60 0.16 -3.92 16 8 C -0.06 -2.23 2.12 -10.78 -0.02 -2.25 16 9 H 0.04 1.57 6.17 -2.39 -0.01 1.56 16 10 C 0.06 2.33 4.35 86.30 0.38 2.71 16 11 N -0.50 -21.80 3.37 -905.36 -3.05 -24.85 16 12 C 0.21 10.34 4.77 85.56 0.41 10.75 16 13 C -0.50 -26.65 5.38 25.60 0.14 -26.51 16 14 H 0.06 3.44 5.95 -2.92 -0.02 3.43 16 15 C 0.06 3.16 4.50 84.66 0.38 3.54 16 16 N -0.84 -45.26 10.89 21.45 0.23 -45.02 16 17 Si 0.89 43.01 24.40 68.60 1.67 44.69 16 18 H -0.26 -12.15 6.32 99.48 0.63 -11.52 16 19 H -0.32 -15.95 7.11 99.48 0.71 -15.24 16 20 H -0.27 -12.65 6.53 99.48 0.65 -12.00 16 21 C 0.12 4.68 5.28 85.56 0.45 5.13 16 22 C 0.16 6.94 4.26 42.55 0.18 7.12 16 23 C -0.17 -6.46 9.72 22.36 0.22 -6.24 16 24 C -0.10 -3.76 9.70 22.47 0.22 -3.54 16 25 C -0.19 -7.05 7.36 22.36 0.16 -6.89 16 26 C 0.05 1.85 7.27 84.67 0.62 2.46 16 27 N -0.43 -19.09 6.38 -183.88 -1.17 -20.26 16 28 C -0.10 -2.80 4.49 30.61 0.14 -2.66 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.01 6.57 -2.38 -0.02 1.00 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.53 6.56 -2.39 -0.02 1.51 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 4.13 5.76 -2.39 -0.01 4.12 16 40 H 0.01 0.38 8.12 -2.39 -0.02 0.37 16 41 H 0.07 2.31 7.93 -2.39 -0.02 2.30 16 42 H 0.01 0.66 6.00 -2.39 -0.01 0.65 16 43 H -0.04 -1.80 8.06 -2.38 -0.02 -1.82 16 44 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 45 H 0.09 3.00 7.83 -2.39 -0.02 2.98 16 46 H 0.02 0.87 8.06 -2.38 -0.02 0.86 16 47 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 48 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 49 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 50 H 0.14 5.37 7.96 -2.91 -0.02 5.35 16 51 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 52 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -57.49 374.43 2.99 -54.50 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.72 Total: 23.45 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 4.59 Total: -32.51 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -3.99 Total: -90.13 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.67 Total: 44.69 kcal Total: -57.49 2.99 -54.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183048232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.914 kcal (2) G-P(sol) polarization free energy of solvation -57.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds