Wall clock time and date at job start Tue Mar 31 2020 11:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46789 * 2 1 4 4 N 1.46899 * 109.46604 * 180.02562 * 3 2 1 5 5 C 1.46848 * 111.00645 * 45.78985 * 4 3 2 6 6 C 1.53039 * 109.52485 * 185.83918 * 5 4 3 7 7 C 1.53119 * 109.27899 * 300.82088 * 6 5 4 8 8 N 1.46894 * 109.52083 * 177.56270 * 7 6 5 9 9 C 1.46899 * 110.99827 * 153.44403 * 8 7 6 10 10 H 1.08994 * 109.47176 * 34.14389 * 9 8 7 11 11 C 1.52995 * 109.47138 * 154.14503 * 9 8 7 12 12 C 1.50702 * 109.47077 * 294.60036 * 11 9 8 13 13 H 1.08002 * 120.00004 * 355.88178 * 12 11 9 14 14 C 1.37880 * 120.00092 * 175.86933 * 12 11 9 15 15 N 1.31512 * 119.99763 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00191 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47436 * 89.99157 * 16 14 12 18 18 H 1.48500 * 109.47322 * 209.99711 * 16 14 12 19 19 H 1.48506 * 109.46984 * 329.99250 * 16 14 12 20 20 C 1.50699 * 109.47283 * 274.14039 * 9 8 7 21 21 C 1.38242 * 119.99930 * 319.73109 * 20 9 8 22 22 C 1.38239 * 119.99738 * 179.80593 * 21 20 9 23 23 C 1.38231 * 119.99932 * 0.39624 * 22 21 20 24 24 C 1.38233 * 120.00484 * 359.85658 * 23 22 21 25 25 C 1.38232 * 120.00170 * 139.99842 * 20 9 8 26 26 C 1.53115 * 109.16078 * 57.65532 * 7 6 5 27 27 C 1.46846 * 110.99757 * 170.00384 * 4 3 2 28 28 H 1.08998 * 109.47157 * 60.00005 * 1 2 3 29 29 H 1.09000 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46877 * 299.99778 * 1 2 3 31 31 H 1.08995 * 109.46966 * 240.00081 * 2 1 3 32 32 H 1.08998 * 109.47157 * 119.99995 * 2 1 3 33 33 H 1.08995 * 109.47301 * 60.00286 * 3 2 1 34 34 H 1.08998 * 109.47267 * 299.99928 * 3 2 1 35 35 H 1.09001 * 109.46005 * 65.81615 * 5 4 3 36 36 H 1.09002 * 109.45725 * 305.85757 * 5 4 3 37 37 H 1.08995 * 109.49766 * 180.87954 * 6 5 4 38 38 H 1.08999 * 109.50199 * 60.76415 * 6 5 4 39 39 H 1.09002 * 109.51728 * 297.74891 * 7 6 5 40 40 H 1.00906 * 111.00041 * 277.39555 * 8 7 6 41 41 H 1.09001 * 109.47411 * 54.60209 * 11 9 8 42 42 H 1.09005 * 109.47499 * 174.60466 * 11 9 8 43 43 H 0.97007 * 119.99828 * 180.02562 * 15 14 12 44 44 H 1.07996 * 119.99731 * 359.97438 * 21 20 9 45 45 H 1.08001 * 119.99297 * 180.22851 * 22 21 20 46 46 H 1.08007 * 119.99932 * 179.83238 * 23 22 21 47 47 H 1.07990 * 120.00236 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.00313 * 359.97438 * 25 20 9 49 49 H 1.08995 * 109.50541 * 62.28871 * 26 7 6 50 50 H 1.09002 * 109.50353 * 182.40896 * 26 7 6 51 51 H 1.08996 * 109.46885 * 54.14149 * 27 4 3 52 52 H 1.09008 * 109.45207 * 294.16440 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0349 0.4867 -0.9836 6 6 5.5578 0.4072 -0.8555 7 6 6.1584 1.7954 -1.0937 8 7 7.6152 1.7373 -0.9146 9 6 8.2844 2.7822 -1.7009 10 1 7.6546 3.6712 -1.7343 11 6 9.6245 3.1307 -1.0502 12 6 9.3802 3.7544 0.2998 13 1 8.3706 3.9499 0.6297 14 6 10.4458 4.0754 1.1139 15 7 10.2325 4.6192 2.2922 16 14 12.1920 3.7377 0.5433 17 1 12.7124 4.9222 -0.1858 18 1 13.0535 3.4637 1.7214 19 1 12.1985 2.5586 -0.3595 20 6 8.5217 2.2818 -3.1024 21 6 8.9289 0.9773 -3.3109 22 6 9.1428 0.5171 -4.5968 23 6 8.9572 1.3638 -5.6736 24 6 8.5551 2.6697 -5.4649 25 6 8.3375 3.1288 -4.1793 26 6 5.5581 2.7819 -0.0883 27 6 4.0351 2.7926 -0.2386 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.7716 0.8173 -1.9884 36 1 3.6031 -0.4972 -0.8004 37 1 5.9492 -0.2906 -1.5957 38 1 5.8214 0.0634 0.1447 39 1 5.9279 2.1228 -2.1075 40 1 7.8626 1.8050 0.0613 41 1 10.2167 2.2236 -0.9296 42 1 10.1638 3.8351 -1.6836 43 1 10.9822 4.8453 2.8648 44 1 9.0774 0.3170 -2.4693 45 1 9.4574 -0.5031 -4.7598 46 1 9.1269 1.0050 -6.6782 47 1 8.4106 3.3312 -6.3062 48 1 8.0231 4.1491 -4.0162 49 1 5.8217 2.4756 0.9239 50 1 5.9497 3.7809 -0.2805 51 1 3.6036 3.4836 0.4856 52 1 3.7719 3.1123 -1.2470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183370440.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:14 Heat of formation + Delta-G solvation = -3.843951 kcal Electronic energy + Delta-G solvation = -27188.356441 eV Core-core repulsion = 23764.821791 eV Total energy + Delta-G solvation = -3423.534650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.71795 -39.90475 -37.71680 -35.67688 -34.47695 -33.07219 -31.81357 -31.65815 -30.98709 -30.15114 -26.86634 -25.78786 -24.52355 -23.57188 -23.25353 -23.07014 -21.60486 -21.10150 -20.57430 -19.01706 -17.45462 -17.31598 -16.64443 -16.38684 -16.21998 -16.02054 -15.82659 -15.62194 -15.14864 -14.83516 -14.79845 -14.60069 -14.35142 -14.08637 -13.89961 -13.79245 -13.59559 -13.42516 -13.21514 -13.08153 -13.01266 -12.57994 -12.40626 -12.33697 -12.17969 -12.07047 -11.92550 -11.84375 -11.73507 -11.61210 -11.50804 -11.40586 -11.28289 -11.07262 -10.76683 -9.68978 -9.45223 -9.27549 -9.16838 -8.28533 -6.31349 0.58397 0.65040 1.33876 1.36600 1.47814 2.35370 2.92174 2.99674 3.06396 3.36323 3.82055 3.88313 4.01194 4.04857 4.11009 4.15087 4.22746 4.28579 4.30153 4.40952 4.42831 4.45845 4.51843 4.56549 4.63046 4.67855 4.70911 4.75312 4.79681 4.83419 4.85725 4.87598 4.92477 5.04246 5.09647 5.16115 5.20600 5.25095 5.28498 5.29518 5.33106 5.35022 5.40881 5.44961 5.60008 5.70493 5.75063 5.89555 6.13428 6.18653 6.24317 6.25937 6.40355 6.59685 6.74676 7.33008 8.86976 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.004084 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.600696 B = 6854.219624 C = 8987.044875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.055 3.945 4 N -0.550 5.550 5 C 0.058 3.942 6 C -0.094 4.094 7 C 0.098 3.902 8 N -0.671 5.671 9 C 0.148 3.852 10 H 0.027 0.973 11 C -0.002 4.002 12 C -0.518 4.518 13 H 0.041 0.959 14 C 0.015 3.985 15 N -0.944 5.944 16 Si 0.940 3.060 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.251 1.251 20 C -0.078 4.078 21 C -0.102 4.102 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.139 4.139 26 C -0.136 4.136 27 C 0.071 3.929 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.346 0.654 41 H 0.025 0.975 42 H 0.012 0.988 43 H 0.265 0.735 44 H 0.119 0.881 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.141 0.859 48 H 0.114 0.886 49 H 0.053 0.947 50 H 0.044 0.956 51 H 0.073 0.927 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.985 -10.184 -13.066 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.072 4.072 4 N -0.275 5.275 5 C -0.070 4.070 6 C -0.132 4.132 7 C -0.012 4.012 8 N -0.301 5.301 9 C 0.038 3.962 10 H 0.045 0.955 11 C -0.040 4.040 12 C -0.556 4.556 13 H 0.059 0.941 14 C -0.182 4.182 15 N -0.585 5.585 16 Si 0.764 3.236 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.175 1.175 20 C -0.079 4.079 21 C -0.121 4.121 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.158 4.158 26 C -0.176 4.176 27 C -0.058 4.058 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.166 0.834 41 H 0.043 0.957 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.137 0.863 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.159 0.841 48 H 0.132 0.868 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.092 0.908 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.635 -10.756 -12.918 21.645 hybrid contribution 0.520 1.722 0.361 1.835 sum -13.116 -9.034 -12.557 20.280 Atomic orbital electron populations 1.21713 0.94425 1.02373 1.02008 1.21663 0.96597 0.95359 1.02582 1.22207 0.86028 0.98233 1.00726 1.61982 1.08178 1.06823 1.50495 1.22200 0.94650 0.97340 0.92809 1.21471 0.93883 0.95725 1.02143 1.21536 0.87190 0.95405 0.97067 1.60646 1.06474 1.48101 1.14903 1.20118 0.95004 0.91111 0.89971 0.95532 1.19622 0.94114 0.96011 0.94210 1.21262 0.93635 1.39913 1.00831 0.94078 1.25799 1.03374 0.94400 0.94662 1.70047 1.32885 1.44438 1.11081 0.85817 0.79838 0.79753 0.78171 1.19794 1.21064 1.17468 1.20064 0.98693 0.94842 0.94298 1.21079 0.98240 0.95221 0.97541 1.21439 1.00271 1.00770 0.92223 1.21419 0.99887 0.93726 0.99766 1.21323 0.99871 0.96772 0.96377 1.21202 1.01910 0.99495 0.93192 1.22180 0.95842 0.99357 1.00212 1.21891 0.94120 0.90413 0.99385 0.92579 0.91686 0.92509 0.91318 0.91614 0.90855 0.94881 0.95112 0.88487 0.90664 0.92226 0.92213 0.83386 0.95697 0.97001 0.92619 0.86318 0.84248 0.83604 0.84120 0.86762 0.92779 0.93698 0.90816 0.94849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.12 -2.01 5.18 30.60 0.16 -1.85 16 3 C 0.06 1.09 5.27 86.30 0.46 1.55 16 4 N -0.55 -13.64 4.81 -896.34 -4.31 -17.95 16 5 C 0.06 1.34 4.85 86.33 0.42 1.75 16 6 C -0.09 -2.56 5.70 30.65 0.17 -2.38 16 7 C 0.10 3.16 2.33 44.99 0.10 3.27 16 8 N -0.67 -25.08 5.32 -472.94 -2.52 -27.59 16 9 C 0.15 5.93 2.00 44.17 0.09 6.02 16 10 H 0.03 1.14 7.14 -2.39 -0.02 1.13 16 11 C 0.00 -0.09 3.62 29.85 0.11 0.02 16 12 C -0.52 -28.92 8.61 25.60 0.22 -28.70 16 13 H 0.04 2.50 7.89 -2.91 -0.02 2.47 16 14 C 0.02 0.88 5.47 84.66 0.46 1.35 16 15 N -0.94 -58.37 13.96 21.45 0.30 -58.07 16 16 Si 0.94 44.81 27.55 68.60 1.89 46.70 16 17 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.25 -11.37 6.43 99.48 0.64 -10.73 16 20 C -0.08 -2.73 4.67 -19.87 -0.09 -2.82 16 21 C -0.10 -3.28 9.32 22.27 0.21 -3.07 16 22 C -0.13 -3.33 10.05 22.27 0.22 -3.10 16 23 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 24 C -0.13 -3.17 10.05 22.27 0.22 -2.94 16 25 C -0.14 -4.35 9.67 22.27 0.22 -4.13 16 26 C -0.14 -4.59 5.34 30.65 0.16 -4.43 16 27 C 0.07 1.94 5.42 86.33 0.47 2.41 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 1.07 6.21 -2.39 -0.01 1.05 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.03 0.64 8.08 -2.39 -0.02 0.62 16 35 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 1.90 5.81 -2.39 -0.01 1.89 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.98 7.66 -2.39 -0.02 1.96 16 40 H 0.35 14.84 7.00 -89.69 -0.63 14.21 16 41 H 0.02 1.19 6.91 -2.39 -0.02 1.18 16 42 H 0.01 0.56 7.78 -2.38 -0.02 0.55 16 43 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 44 H 0.12 3.96 7.73 -2.91 -0.02 3.93 16 45 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 46 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 47 H 0.14 2.72 8.06 -2.92 -0.02 2.70 16 48 H 0.11 3.47 8.04 -2.91 -0.02 3.45 16 49 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 50 H 0.04 1.70 7.61 -2.39 -0.02 1.68 16 51 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 52 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -62.93 399.62 0.07 -62.86 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.17 Total: 35.09 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 4.54 Total: -41.04 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -6.52 Total: -103.61 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.89 Total: 46.70 kcal Total: -62.93 0.07 -62.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183370440.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.015 kcal (2) G-P(sol) polarization free energy of solvation -62.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds