Wall clock time and date at job start Tue Mar 31 2020 11:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 N 1.46900 * 109.46951 * 180.02562 * 3 2 1 5 5 C 1.46847 * 110.99950 * 170.00049 * 4 3 2 6 6 C 1.53039 * 109.52276 * 185.83888 * 5 4 3 7 7 C 1.53127 * 109.27780 * 300.81814 * 6 5 4 8 8 N 1.46896 * 109.52208 * 177.56000 * 7 6 5 9 9 C 1.46899 * 111.00161 * 155.13021 * 8 7 6 10 10 H 1.09009 * 109.46584 * 324.99605 * 9 8 7 11 11 C 1.52996 * 109.47377 * 205.00092 * 9 8 7 12 12 C 1.50702 * 109.47159 * 64.99374 * 11 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 9 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.50700 * 109.47601 * 84.99617 * 9 8 7 21 21 C 1.38233 * 119.99377 * 39.72777 * 20 9 8 22 22 C 1.38237 * 119.99600 * 179.78842 * 21 20 9 23 23 C 1.38241 * 119.99990 * 0.44354 * 22 21 20 24 24 C 1.38237 * 119.99716 * 359.81238 * 23 22 21 25 25 C 1.38228 * 120.00326 * 220.00449 * 20 9 8 26 26 C 1.53113 * 109.21192 * 57.62266 * 7 6 5 27 27 C 1.46848 * 111.00080 * 294.20944 * 4 3 2 28 28 H 1.09005 * 109.47430 * 300.00038 * 1 2 3 29 29 H 1.08997 * 109.47318 * 59.99942 * 1 2 3 30 30 H 1.08999 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47012 * 240.00224 * 2 1 3 32 32 H 1.08997 * 109.47318 * 120.00058 * 2 1 3 33 33 H 1.08992 * 109.47626 * 60.00067 * 3 2 1 34 34 H 1.09003 * 109.46890 * 299.99833 * 3 2 1 35 35 H 1.09000 * 109.46350 * 65.82145 * 5 4 3 36 36 H 1.08996 * 109.45486 * 305.84641 * 5 4 3 37 37 H 1.09000 * 109.50599 * 180.87840 * 6 5 4 38 38 H 1.09002 * 109.50619 * 60.75671 * 6 5 4 39 39 H 1.08997 * 109.52062 * 297.68779 * 7 6 5 40 40 H 1.00903 * 111.00149 * 279.07955 * 8 7 6 41 41 H 1.09004 * 109.47066 * 304.99578 * 11 9 8 42 42 H 1.08994 * 109.47405 * 184.99408 * 11 9 8 43 43 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 44 44 H 1.07995 * 120.00514 * 359.97438 * 21 20 9 45 45 H 1.08001 * 120.00058 * 180.28006 * 22 21 20 46 46 H 1.07995 * 120.00194 * 179.83256 * 23 22 21 47 47 H 1.08001 * 119.99824 * 180.02562 * 24 23 22 48 48 H 1.08005 * 119.99906 * 359.97438 * 25 20 9 49 49 H 1.09004 * 109.50296 * 62.31993 * 26 7 6 50 50 H 1.09001 * 109.50581 * 182.43417 * 26 7 6 51 51 H 1.09003 * 109.45750 * 294.17957 * 27 4 3 52 52 H 1.08995 * 109.46179 * 54.15436 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0350 2.7927 -0.2387 6 6 5.5579 2.7310 -0.3775 7 6 6.1591 2.1474 0.9042 8 7 7.6158 2.0314 0.7545 9 6 8.2829 2.0539 2.0631 10 1 7.7439 2.7227 2.7342 11 6 9.7202 2.5506 1.8944 12 6 9.7051 3.9841 1.4298 13 1 8.7644 4.4905 1.2712 14 6 10.8922 4.6512 1.2133 15 7 10.8790 5.9039 0.8131 16 14 12.5192 3.7756 1.4883 17 1 12.9464 3.1175 0.2275 18 1 13.5480 4.7621 1.9050 19 1 12.3566 2.7512 2.5510 20 6 8.2969 0.6634 2.6440 21 6 8.5346 -0.4250 1.8256 22 6 8.5517 -1.7001 2.3592 23 6 8.3220 -1.8876 3.7094 24 6 8.0790 -0.7995 4.5267 25 6 8.0662 0.4759 3.9939 26 6 5.5587 0.7617 1.1568 27 6 4.0357 0.8802 1.2494 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6765 1.9563 -0.8900 35 1 3.7726 3.4378 0.5998 36 1 3.6029 3.1943 -1.1552 37 1 5.9496 3.7354 -0.5386 38 1 5.8208 2.0970 -1.2242 39 1 5.9302 2.8023 1.7449 40 1 7.8612 1.2002 0.2379 41 1 10.2331 1.9346 1.1557 42 1 10.2422 2.4835 2.8489 43 1 11.7141 6.3730 0.6604 44 1 8.7099 -0.2789 0.7701 45 1 8.7419 -2.5501 1.7207 46 1 8.3327 -2.8840 4.1258 47 1 7.9000 -0.9459 5.5817 48 1 7.8765 1.3260 4.6325 49 1 5.8217 0.0958 0.3348 50 1 5.9510 0.3599 2.0910 51 1 3.7732 1.5343 2.0809 52 1 3.6041 -0.1071 1.4138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183370460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:18 Heat of formation + Delta-G solvation = 17.126045 kcal Electronic energy + Delta-G solvation = -27348.363836 eV Core-core repulsion = 23925.738514 eV Total energy + Delta-G solvation = -3422.625322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.77847 -38.79993 -36.39679 -34.44704 -32.69267 -31.75930 -30.73521 -30.68330 -29.57760 -28.72865 -25.76798 -24.36396 -23.21449 -22.69982 -21.98294 -21.65829 -20.83004 -19.98401 -19.28085 -17.12522 -16.33838 -16.19375 -15.56442 -15.13861 -15.00491 -14.69208 -14.51631 -14.24472 -13.89321 -13.81590 -13.69063 -13.21964 -13.15888 -13.02287 -12.63055 -12.53770 -12.38590 -12.26014 -12.08646 -11.76775 -11.55634 -11.42313 -11.20705 -11.10345 -11.02372 -10.89540 -10.77570 -10.66150 -10.41357 -10.23675 -10.14766 -9.96349 -9.65336 -9.04035 -8.71542 -8.41589 -8.34177 -8.28585 -7.68230 -5.90164 -3.84179 1.60277 1.61233 3.37945 3.45211 3.48726 3.85017 4.02163 4.55725 4.63622 4.69401 4.83974 4.95503 5.07056 5.08090 5.11697 5.16754 5.19961 5.27864 5.29773 5.35606 5.42805 5.44622 5.48482 5.52927 5.60363 5.70665 5.73051 5.75630 5.77799 5.85086 5.88732 5.92307 5.99047 6.03135 6.10062 6.15071 6.22230 6.26921 6.29109 6.51892 6.57030 6.64104 6.68522 6.70787 6.87687 7.09380 7.13210 7.18576 7.22380 7.29859 7.80565 7.90354 8.07005 8.71588 9.20869 9.72797 11.23739 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.003938 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.198345 B = 7108.847171 C = 9006.202442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.538 5.538 5 C 0.058 3.942 6 C -0.103 4.103 7 C 0.091 3.909 8 N -0.652 5.652 9 C 0.139 3.861 10 H 0.078 0.922 11 C 0.004 3.996 12 C -0.488 4.488 13 H 0.078 0.922 14 C 0.063 3.937 15 N -0.908 5.908 16 Si 0.872 3.128 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.268 1.268 20 C -0.090 4.090 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.136 4.136 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.145 4.145 27 C 0.060 3.940 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.333 0.667 41 H 0.013 0.987 42 H 0.017 0.983 43 H 0.259 0.741 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.028 0.972 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.283 -14.558 1.812 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.263 5.263 5 C -0.071 4.071 6 C -0.141 4.141 7 C -0.020 4.020 8 N -0.280 5.280 9 C 0.029 3.971 10 H 0.097 0.903 11 C -0.033 4.033 12 C -0.526 4.526 13 H 0.096 0.904 14 C -0.137 4.137 15 N -0.548 5.548 16 Si 0.700 3.300 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.193 1.193 20 C -0.092 4.092 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.155 4.155 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.185 4.185 27 C -0.069 4.069 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.153 0.847 41 H 0.031 0.969 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.047 0.953 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.885 -13.997 1.246 21.208 hybrid contribution 0.528 -0.831 1.169 1.528 sum -15.357 -14.828 2.415 21.483 Atomic orbital electron populations 1.21739 0.95829 1.01617 1.01691 1.21547 0.95136 0.96644 1.02634 1.22123 0.87682 0.96968 1.00544 1.61969 1.06643 1.22584 1.35123 1.22115 0.96357 0.88320 1.00258 1.21546 0.92143 1.02399 0.98032 1.21647 0.88188 0.94479 0.97695 1.60653 1.05140 1.44801 1.17423 1.20771 0.98649 0.88851 0.88817 0.90346 1.19583 0.89819 0.97643 0.96292 1.20982 0.94424 0.94176 1.43044 0.90397 1.24977 0.98672 0.94711 0.95335 1.69905 1.26705 1.10177 1.48028 0.86910 0.84515 0.79671 0.78903 1.20520 1.21688 1.19303 1.21187 0.96054 0.97851 0.94105 1.20967 1.00569 0.92284 0.99925 1.21056 1.00375 0.96897 0.95284 1.21013 1.01991 0.98404 0.94043 1.21083 1.00529 0.92901 0.99316 1.21087 1.00702 0.96950 0.95006 1.22455 0.94389 0.99424 1.02190 1.22054 0.95817 0.99219 0.89761 0.92964 0.92698 0.92664 0.91180 0.92065 0.95237 0.90964 0.95114 0.90922 0.90288 0.91369 0.91228 0.84664 0.96879 0.96493 0.93068 0.86212 0.86617 0.86813 0.86676 0.86264 0.91429 0.91361 0.95335 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.06 5.86 -26.73 -0.16 -1.22 16 3 C 0.05 0.54 4.96 -3.82 -0.02 0.52 16 4 N -0.54 -6.36 4.66 -234.67 -1.09 -7.45 16 5 C 0.06 0.72 5.46 -3.83 -0.02 0.69 16 6 C -0.10 -1.49 5.71 -26.65 -0.15 -1.64 16 7 C 0.09 1.38 2.53 -67.59 -0.17 1.21 16 8 N -0.65 -11.57 5.76 -100.83 -0.58 -12.15 16 9 C 0.14 2.64 2.17 -68.87 -0.15 2.49 16 10 H 0.08 1.55 7.29 -51.92 -0.38 1.17 16 11 C 0.00 0.10 3.70 -27.88 -0.10 0.00 16 12 C -0.49 -13.67 9.39 -34.44 -0.32 -13.99 16 13 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 14 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 15 N -0.91 -28.23 13.96 55.43 0.77 -27.45 16 16 Si 0.87 22.06 27.47 -169.99 -4.67 17.39 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 19 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 20 C -0.09 -1.46 2.97 -104.63 -0.31 -1.77 16 21 C -0.12 -1.77 8.44 -39.58 -0.33 -2.10 16 22 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 23 C -0.14 -1.70 10.05 -39.58 -0.40 -2.09 16 24 C -0.12 -1.57 10.05 -39.59 -0.40 -1.96 16 25 C -0.12 -1.78 9.66 -39.59 -0.38 -2.16 16 26 C -0.15 -1.91 4.71 -26.65 -0.13 -2.04 16 27 C 0.06 0.72 5.29 -3.83 -0.02 0.70 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 33 H 0.03 0.30 8.12 -51.93 -0.42 -0.13 16 34 H 0.07 0.68 7.99 -51.93 -0.41 0.26 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.15 7.43 -51.93 -0.39 0.76 16 40 H 0.33 5.54 6.06 -39.29 -0.24 5.30 16 41 H 0.01 0.31 7.58 -51.93 -0.39 -0.08 16 42 H 0.02 0.41 7.19 -51.93 -0.37 0.04 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.12 1.73 6.50 -52.49 -0.34 1.39 16 45 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 46 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 47 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 48 H 0.12 1.69 8.04 -52.48 -0.42 1.27 16 49 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 50 H 0.07 0.95 6.13 -51.93 -0.32 0.63 16 51 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.07 0.79 6.21 -51.93 -0.32 0.46 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -30.32 395.65 -12.22 -42.54 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -9.42 Total: 5.45 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -3.19 Total: -24.29 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.90 Total: -47.05 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.32 -12.22 -42.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183370460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.665 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds