Wall clock time and date at job start Tue Mar 31 2020 11:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 N 1.46900 * 109.46951 * 180.02562 * 3 2 1 5 5 C 1.46847 * 110.99950 * 170.00049 * 4 3 2 6 6 C 1.53039 * 109.52276 * 185.83888 * 5 4 3 7 7 C 1.53127 * 109.27780 * 300.81814 * 6 5 4 8 8 N 1.46896 * 109.52208 * 177.56000 * 7 6 5 9 9 C 1.46899 * 111.00161 * 155.13021 * 8 7 6 10 10 H 1.09009 * 109.46584 * 324.99605 * 9 8 7 11 11 C 1.52996 * 109.47377 * 205.00092 * 9 8 7 12 12 C 1.50702 * 109.47159 * 64.99374 * 11 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 9 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.50700 * 109.47601 * 84.99617 * 9 8 7 21 21 C 1.38233 * 119.99377 * 39.72777 * 20 9 8 22 22 C 1.38237 * 119.99600 * 179.78842 * 21 20 9 23 23 C 1.38241 * 119.99990 * 0.44354 * 22 21 20 24 24 C 1.38237 * 119.99716 * 359.81238 * 23 22 21 25 25 C 1.38228 * 120.00326 * 220.00449 * 20 9 8 26 26 C 1.53113 * 109.21192 * 57.62266 * 7 6 5 27 27 C 1.46848 * 111.00080 * 294.20944 * 4 3 2 28 28 H 1.09005 * 109.47430 * 300.00038 * 1 2 3 29 29 H 1.08997 * 109.47318 * 59.99942 * 1 2 3 30 30 H 1.08999 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47012 * 240.00224 * 2 1 3 32 32 H 1.08997 * 109.47318 * 120.00058 * 2 1 3 33 33 H 1.08992 * 109.47626 * 60.00067 * 3 2 1 34 34 H 1.09003 * 109.46890 * 299.99833 * 3 2 1 35 35 H 1.09000 * 109.46350 * 65.82145 * 5 4 3 36 36 H 1.08996 * 109.45486 * 305.84641 * 5 4 3 37 37 H 1.09000 * 109.50599 * 180.87840 * 6 5 4 38 38 H 1.09002 * 109.50619 * 60.75671 * 6 5 4 39 39 H 1.08997 * 109.52062 * 297.68779 * 7 6 5 40 40 H 1.00903 * 111.00149 * 279.07955 * 8 7 6 41 41 H 1.09004 * 109.47066 * 304.99578 * 11 9 8 42 42 H 1.08994 * 109.47405 * 184.99408 * 11 9 8 43 43 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 44 44 H 1.07995 * 120.00514 * 359.97438 * 21 20 9 45 45 H 1.08001 * 120.00058 * 180.28006 * 22 21 20 46 46 H 1.07995 * 120.00194 * 179.83256 * 23 22 21 47 47 H 1.08001 * 119.99824 * 180.02562 * 24 23 22 48 48 H 1.08005 * 119.99906 * 359.97438 * 25 20 9 49 49 H 1.09004 * 109.50296 * 62.31993 * 26 7 6 50 50 H 1.09001 * 109.50581 * 182.43417 * 26 7 6 51 51 H 1.09003 * 109.45750 * 294.17957 * 27 4 3 52 52 H 1.08995 * 109.46179 * 54.15436 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0350 2.7927 -0.2387 6 6 5.5579 2.7310 -0.3775 7 6 6.1591 2.1474 0.9042 8 7 7.6158 2.0314 0.7545 9 6 8.2829 2.0539 2.0631 10 1 7.7439 2.7227 2.7342 11 6 9.7202 2.5506 1.8944 12 6 9.7051 3.9841 1.4298 13 1 8.7644 4.4905 1.2712 14 6 10.8922 4.6512 1.2133 15 7 10.8790 5.9039 0.8131 16 14 12.5192 3.7756 1.4883 17 1 12.9464 3.1175 0.2275 18 1 13.5480 4.7621 1.9050 19 1 12.3566 2.7512 2.5510 20 6 8.2969 0.6634 2.6440 21 6 8.5346 -0.4250 1.8256 22 6 8.5517 -1.7001 2.3592 23 6 8.3220 -1.8876 3.7094 24 6 8.0790 -0.7995 4.5267 25 6 8.0662 0.4759 3.9939 26 6 5.5587 0.7617 1.1568 27 6 4.0357 0.8802 1.2494 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6765 1.9563 -0.8900 35 1 3.7726 3.4378 0.5998 36 1 3.6029 3.1943 -1.1552 37 1 5.9496 3.7354 -0.5386 38 1 5.8208 2.0970 -1.2242 39 1 5.9302 2.8023 1.7449 40 1 7.8612 1.2002 0.2379 41 1 10.2331 1.9346 1.1557 42 1 10.2422 2.4835 2.8489 43 1 11.7141 6.3730 0.6604 44 1 8.7099 -0.2789 0.7701 45 1 8.7419 -2.5501 1.7207 46 1 8.3327 -2.8840 4.1258 47 1 7.9000 -0.9459 5.5817 48 1 7.8765 1.3260 4.6325 49 1 5.8217 0.0958 0.3348 50 1 5.9510 0.3599 2.0910 51 1 3.7732 1.5343 2.0809 52 1 3.6041 -0.1071 1.4138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183370460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:16 Heat of formation + Delta-G solvation = -0.335234 kcal Electronic energy + Delta-G solvation = -27349.121014 eV Core-core repulsion = 23925.738514 eV Total energy + Delta-G solvation = -3423.382500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.96293 -39.83496 -37.59071 -35.64877 -34.50022 -33.04276 -31.81476 -31.75377 -30.91004 -30.24438 -26.87805 -25.78900 -24.25751 -23.78389 -23.32692 -22.96681 -21.65944 -21.33749 -20.56840 -18.95053 -17.79942 -17.24814 -16.43837 -16.38065 -16.34187 -16.01488 -15.62763 -15.49477 -15.23555 -14.94717 -14.85807 -14.55954 -14.29244 -14.17671 -14.06747 -13.83624 -13.70061 -13.36817 -13.15441 -12.94299 -12.83435 -12.63518 -12.36398 -12.25150 -12.20578 -12.14924 -12.00084 -11.83426 -11.71208 -11.68198 -11.58848 -11.39213 -11.23838 -11.05979 -10.68301 -9.77227 -9.50253 -9.28839 -9.04422 -8.18064 -6.16632 0.51588 0.54889 1.36272 1.37291 1.48508 2.41148 2.91022 2.94358 3.14176 3.34855 3.81039 3.84745 3.92831 4.02975 4.09024 4.15207 4.19490 4.22106 4.30661 4.33194 4.43863 4.46742 4.49298 4.59165 4.62488 4.68058 4.68970 4.73340 4.78228 4.81128 4.87331 4.88862 4.96566 5.05150 5.09929 5.14108 5.18764 5.20955 5.23037 5.30005 5.33712 5.36739 5.43671 5.44719 5.61739 5.65813 5.73642 5.76051 6.12999 6.17279 6.17923 6.34482 6.48590 6.70049 6.90479 7.43703 8.99254 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.003938 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.198345 B = 7108.847171 C = 9006.202442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.054 3.946 4 N -0.543 5.543 5 C 0.064 3.936 6 C -0.098 4.098 7 C 0.095 3.905 8 N -0.671 5.671 9 C 0.152 3.848 10 H 0.057 0.943 11 C 0.011 3.989 12 C -0.486 4.486 13 H 0.036 0.964 14 C 0.000 4.000 15 N -0.956 5.956 16 Si 0.942 3.058 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.253 1.253 20 C -0.106 4.106 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.134 4.134 26 C -0.128 4.128 27 C 0.064 3.936 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.339 0.661 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.261 0.739 44 H 0.118 0.882 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.141 0.859 48 H 0.116 0.884 49 H 0.068 0.932 50 H 0.064 0.936 51 H 0.023 0.977 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.817 -18.202 2.521 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.073 4.073 4 N -0.267 5.267 5 C -0.064 4.064 6 C -0.136 4.136 7 C -0.015 4.015 8 N -0.301 5.301 9 C 0.042 3.958 10 H 0.076 0.924 11 C -0.027 4.027 12 C -0.525 4.525 13 H 0.055 0.945 14 C -0.195 4.195 15 N -0.599 5.599 16 Si 0.766 3.234 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.177 1.177 20 C -0.108 4.108 21 C -0.147 4.147 22 C -0.135 4.135 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.065 4.065 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.160 0.840 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.136 0.864 45 H 0.160 0.840 46 H 0.164 0.836 47 H 0.159 0.841 48 H 0.134 0.866 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.041 0.959 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.444 -17.662 1.960 24.211 hybrid contribution 0.608 0.319 0.951 1.174 sum -15.835 -17.343 2.912 23.665 Atomic orbital electron populations 1.21713 0.94541 1.02283 1.02011 1.21505 0.96201 0.95485 1.02286 1.22205 0.86178 0.98069 1.00882 1.61979 1.08041 1.21764 1.34954 1.22014 0.94634 0.89001 1.00752 1.21461 0.93862 1.00729 0.97581 1.21575 0.86955 0.95685 0.97258 1.60554 1.06780 1.45482 1.17304 1.20313 0.95632 0.90685 0.89217 0.92432 1.19458 0.93081 0.94724 0.95461 1.21217 0.92769 0.96370 1.42116 0.94543 1.25877 1.02865 0.95413 0.95342 1.70069 1.27788 1.12075 1.49944 0.85790 0.79424 0.78708 0.79432 1.19616 1.21362 1.17689 1.20804 0.98825 0.96230 0.94931 1.21028 1.01019 0.92856 0.99763 1.21372 0.99285 0.96683 0.96134 1.21434 0.99918 0.99696 0.93647 1.21384 0.99469 0.92014 1.00807 1.21195 1.01390 0.98189 0.94493 1.22240 0.95220 0.97437 1.01849 1.22024 0.94773 0.99958 0.89720 0.92764 0.92285 0.91844 0.91632 0.92241 0.95216 0.90292 0.95619 0.89602 0.92855 0.91437 0.93271 0.83994 0.96829 0.96904 0.93011 0.86437 0.84000 0.83553 0.84108 0.86624 0.91368 0.91761 0.95878 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.81 5.86 30.59 0.18 -1.63 16 3 C 0.05 0.99 4.96 86.30 0.43 1.42 16 4 N -0.54 -12.26 4.66 -896.36 -4.18 -16.44 16 5 C 0.06 1.60 5.46 86.33 0.47 2.07 16 6 C -0.10 -2.96 5.71 30.65 0.17 -2.79 16 7 C 0.10 3.04 2.53 45.00 0.11 3.16 16 8 N -0.67 -24.98 5.76 -472.91 -2.72 -27.70 16 9 C 0.15 5.98 2.17 44.17 0.10 6.08 16 10 H 0.06 2.45 7.29 -2.38 -0.02 2.43 16 11 C 0.01 0.51 3.70 29.85 0.11 0.62 16 12 C -0.49 -28.51 9.39 25.60 0.24 -28.27 16 13 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 14 C 0.00 0.00 5.47 84.66 0.46 0.47 16 15 N -0.96 -61.73 13.96 21.45 0.30 -61.44 16 16 Si 0.94 46.14 27.47 68.60 1.88 48.03 16 17 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 19 H -0.25 -11.67 6.54 99.48 0.65 -11.02 16 20 C -0.11 -3.40 2.97 -19.87 -0.06 -3.46 16 21 C -0.13 -3.62 8.44 22.27 0.19 -3.43 16 22 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 23 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 24 C -0.12 -2.73 10.05 22.27 0.22 -2.51 16 25 C -0.13 -3.88 9.66 22.27 0.22 -3.66 16 26 C -0.13 -3.34 4.71 30.65 0.14 -3.19 16 27 C 0.06 1.46 5.29 86.33 0.46 1.92 16 28 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 0.94 6.43 -2.39 -0.02 0.92 16 33 H 0.03 0.55 8.12 -2.39 -0.02 0.53 16 34 H 0.08 1.34 7.99 -2.39 -0.02 1.32 16 35 H 0.03 0.66 8.14 -2.39 -0.02 0.65 16 36 H 0.09 1.91 8.01 -2.39 -0.02 1.89 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.75 7.43 -2.39 -0.02 1.73 16 40 H 0.34 11.57 6.06 -89.69 -0.54 11.03 16 41 H 0.01 0.64 7.58 -2.38 -0.02 0.63 16 42 H 0.01 0.62 7.19 -2.39 -0.02 0.60 16 43 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.12 3.29 6.50 -2.91 -0.02 3.27 16 45 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 46 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 47 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 48 H 0.12 3.31 8.04 -2.91 -0.02 3.29 16 49 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 50 H 0.06 1.75 6.13 -2.39 -0.01 1.74 16 51 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.09 1.74 6.21 -2.39 -0.01 1.73 16 Total: -1.00 -67.89 395.65 0.16 -67.73 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.27 Total: 29.00 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 4.61 Total: -39.17 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -6.60 Total: -105.57 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.88 Total: 48.03 kcal Total: -67.89 0.16 -67.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183370460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.390 kcal (2) G-P(sol) polarization free energy of solvation -67.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds