Wall clock time and date at job start Tue Mar 31 2020 11:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47416 * 2 1 4 4 H 1.08997 * 109.48697 * 55.49320 * 3 2 1 5 5 C 1.53051 * 109.48769 * 295.42935 * 3 2 1 6 6 N 1.46952 * 109.36618 * 181.63071 * 5 3 2 7 7 C 1.46899 * 111.00257 * 183.19009 * 6 5 3 8 8 C 1.53000 * 109.47079 * 302.24521 * 7 6 5 9 9 C 1.53003 * 109.47306 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47212 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99865 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00029 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00108 * 179.97438 * 12 10 9 14 14 Si 1.86792 * 120.00132 * 0.27789 * 12 10 9 15 15 H 1.48505 * 109.47256 * 269.72479 * 14 12 10 16 16 H 1.48506 * 109.47388 * 29.72022 * 14 12 10 17 17 H 1.48495 * 109.47644 * 149.72524 * 14 12 10 18 18 C 1.46951 * 110.87896 * 59.32040 * 6 5 3 19 19 C 1.53048 * 109.36777 * 300.67925 * 18 6 5 20 20 N 1.46951 * 109.48968 * 175.53872 * 3 2 1 21 21 C 1.46899 * 111.00083 * 303.15619 * 20 3 2 22 22 C 1.50702 * 109.46646 * 300.94365 * 21 20 3 23 23 C 1.38230 * 120.00421 * 274.95271 * 22 21 20 24 24 C 1.38231 * 120.00002 * 179.79210 * 23 22 21 25 25 C 1.38236 * 120.00353 * 0.46486 * 24 23 22 26 26 C 1.38241 * 119.99469 * 359.76848 * 25 24 23 27 27 C 1.38235 * 119.99380 * 95.23469 * 22 21 20 28 28 H 1.09000 * 109.46887 * 305.79071 * 1 2 3 29 29 H 1.09001 * 109.47097 * 65.79254 * 1 2 3 30 30 H 1.08999 * 109.46739 * 185.79390 * 1 2 3 31 31 H 1.09001 * 109.47064 * 239.99628 * 2 1 3 32 32 H 1.09004 * 109.47568 * 120.00171 * 2 1 3 33 33 H 1.09003 * 109.49007 * 61.65946 * 5 3 2 34 34 H 1.09002 * 109.49116 * 301.60126 * 5 3 2 35 35 H 1.08996 * 109.47489 * 182.24814 * 7 6 5 36 36 H 1.09005 * 109.47104 * 62.23990 * 7 6 5 37 37 H 1.09010 * 109.46923 * 59.99952 * 8 7 6 38 38 H 1.09001 * 109.47255 * 300.00189 * 8 7 6 39 39 H 1.09001 * 109.46828 * 60.00003 * 9 8 7 40 40 H 1.08991 * 109.47222 * 299.99923 * 9 8 7 41 41 H 0.96998 * 120.00133 * 179.97438 * 13 12 10 42 42 H 1.09002 * 109.49396 * 60.65113 * 18 6 5 43 43 H 1.09000 * 109.48725 * 180.69161 * 18 6 5 44 44 H 1.08989 * 109.49254 * 178.37192 * 19 18 6 45 45 H 1.09005 * 109.48655 * 298.41613 * 19 18 6 46 46 H 1.08990 * 109.47226 * 60.94521 * 21 20 3 47 47 H 1.09007 * 109.46799 * 180.94913 * 21 20 3 48 48 H 1.08001 * 119.99794 * 0.02562 * 23 22 21 49 49 H 1.08004 * 120.00241 * 180.25698 * 24 23 22 50 50 H 1.07992 * 120.00454 * 179.79027 * 25 24 23 51 51 H 1.07998 * 120.00023 * 179.97438 * 26 25 24 52 52 H 1.07997 * 120.00409 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6125 1.9794 0.8467 5 6 1.6262 2.1304 -1.3030 6 7 2.1507 3.5031 -1.3173 7 6 1.7104 4.2225 -2.5201 8 6 2.1679 3.4611 -3.7658 9 6 1.7087 4.2100 -5.0186 10 6 2.1588 3.4598 -6.2456 11 1 2.7170 2.5410 -6.1422 12 6 1.8590 3.9470 -7.5001 13 7 2.2523 3.2925 -8.5710 14 14 0.9017 5.5409 -7.6788 15 1 -0.5523 5.2425 -7.7257 16 1 1.1887 6.4235 -6.5195 17 1 1.3074 6.2241 -8.9333 18 6 3.6163 3.5049 -1.2096 19 6 4.0302 2.8170 0.0934 20 7 3.5056 1.4443 0.1078 21 6 3.9460 0.7249 1.3105 22 6 3.3519 1.3778 2.5319 23 6 3.9829 2.4623 3.1119 24 6 3.4357 3.0638 4.2297 25 6 2.2625 2.5749 4.7733 26 6 1.6340 1.4873 4.1961 27 6 2.1790 0.8884 3.0757 28 1 -0.3633 0.6010 0.8336 29 1 -0.3633 0.4214 -0.9373 30 1 -0.3633 -1.0224 0.1037 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.5386 2.1559 -1.3713 34 1 2.0311 1.5775 -2.1507 35 1 2.1450 5.2220 -2.5252 36 1 0.6230 4.2990 -2.5200 37 1 1.7332 2.4615 -3.7608 38 1 3.2552 3.3845 -3.7659 39 1 2.1430 5.2098 -5.0238 40 1 0.6215 4.2862 -5.0183 41 1 2.0411 3.6350 -9.4535 42 1 4.0439 2.9677 -2.0562 43 1 3.9796 4.5325 -1.2100 44 1 5.1177 2.7915 0.1616 45 1 3.6256 3.3701 0.9411 46 1 3.6147 -0.3120 1.2553 47 1 5.0337 0.7560 1.3746 48 1 4.9015 2.8421 2.6895 49 1 3.9265 3.9138 4.6805 50 1 1.8368 3.0427 5.6486 51 1 0.7177 1.1050 4.6209 52 1 1.6882 0.0385 2.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183746563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:06 Heat of formation + Delta-G solvation = 25.244765 kcal Electronic energy + Delta-G solvation = -27389.309016 eV Core-core repulsion = 23967.035748 eV Total energy + Delta-G solvation = -3422.273268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51828 -38.81470 -36.43996 -34.11833 -33.54996 -31.98047 -31.10700 -30.83568 -29.38466 -28.04901 -26.01976 -24.70484 -24.12944 -22.74211 -22.19946 -21.69208 -20.88761 -20.22415 -18.97976 -16.99069 -16.70469 -16.09498 -15.99082 -15.45548 -15.21835 -14.96290 -14.77101 -14.38039 -14.03571 -13.88003 -13.78004 -13.65337 -13.38963 -13.09892 -12.82785 -12.68900 -12.46553 -12.21910 -11.93977 -11.88545 -11.66083 -11.47989 -11.43739 -11.22627 -11.16037 -11.09705 -10.82702 -10.69832 -10.53013 -10.26098 -9.88299 -9.79296 -9.62104 -9.19751 -9.11437 -8.97032 -8.51819 -8.39098 -7.86842 -6.02277 -4.00033 1.10496 1.17458 3.31816 3.39125 3.43227 3.51307 3.87967 4.17503 4.46955 4.55471 4.58803 4.75954 4.78180 4.88117 4.93137 4.94838 5.16714 5.25951 5.27893 5.31321 5.33511 5.36273 5.43426 5.51015 5.52128 5.59603 5.66325 5.70957 5.77159 5.79924 5.83949 5.84946 5.92266 5.96093 6.08077 6.12291 6.18421 6.21168 6.22634 6.28831 6.32587 6.36342 6.50837 6.62941 6.77248 6.90755 6.95304 7.01895 7.31249 7.32040 7.38777 7.47031 7.81945 8.56899 9.02874 9.60444 11.11351 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.002774 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.260827 B =10090.671060 C =10410.551737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.087 3.913 4 H 0.053 0.947 5 C 0.058 3.942 6 N -0.540 5.540 7 C 0.051 3.949 8 C -0.136 4.136 9 C -0.010 4.010 10 C -0.519 4.519 11 H 0.069 0.931 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.265 1.265 17 H -0.288 1.288 18 C 0.052 3.948 19 C 0.054 3.946 20 N -0.522 5.522 21 C 0.087 3.913 22 C -0.116 4.116 23 C -0.108 4.108 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.109 4.109 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.014 0.986 40 H 0.010 0.990 41 H 0.262 0.738 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 -4.257 27.957 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.021 4.021 4 H 0.071 0.929 5 C -0.071 4.071 6 N -0.263 5.263 7 C -0.076 4.076 8 C -0.175 4.175 9 C -0.048 4.048 10 C -0.557 4.557 11 H 0.088 0.912 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.190 1.190 17 H -0.214 1.214 18 C -0.076 4.076 19 C -0.074 4.074 20 N -0.245 5.245 21 C -0.040 4.040 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.128 4.128 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.747 -4.236 27.730 28.061 hybrid contribution -0.520 0.898 -0.294 1.079 sum 0.227 -3.338 27.435 27.639 Atomic orbital electron populations 1.21794 0.95448 1.01520 1.02271 1.21690 0.95844 0.95882 1.02566 1.21737 0.86826 0.95671 0.97878 0.92880 1.22236 0.99747 0.88776 0.96319 1.62463 1.09512 1.15135 1.39212 1.22327 1.00419 0.97388 0.87508 1.22053 1.00581 0.99646 0.95197 1.19496 0.95803 0.95975 0.93530 1.21165 1.35559 1.09721 0.89237 0.91237 1.25051 0.95573 0.97090 0.95901 1.69923 1.46996 1.39606 0.97908 0.86762 0.80469 0.84377 0.77577 1.20337 1.18986 1.21440 1.22155 0.88648 1.00093 0.96749 1.22264 0.99156 0.88180 0.97797 1.62543 1.10564 1.15918 1.35431 1.21321 0.99969 0.98091 0.84635 1.20687 0.96196 0.97192 0.97723 1.21081 0.99929 0.95899 0.95782 1.21139 0.96347 0.99898 0.96525 1.21140 0.95914 0.96918 1.00070 1.21148 0.99883 0.96537 0.96395 1.21180 0.95612 1.00060 0.95934 0.92867 0.92114 0.92674 0.91003 0.91717 0.90525 0.93014 0.91237 0.91208 0.92629 0.92745 0.96751 0.97162 0.92798 0.93174 0.90640 0.90714 0.93497 0.89530 0.89977 0.86242 0.86255 0.86353 0.86269 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.51 37.16 0.35 -1.07 16 2 C -0.12 -1.23 4.83 -26.73 -0.13 -1.36 16 3 C 0.09 1.03 1.44 -67.66 -0.10 0.93 16 4 H 0.05 0.69 6.51 -51.93 -0.34 0.35 16 5 C 0.06 0.81 4.05 -3.77 -0.02 0.80 16 6 N -0.54 -8.07 4.92 -234.47 -1.15 -9.22 16 7 C 0.05 0.85 5.38 -3.82 -0.02 0.83 16 8 C -0.14 -2.74 4.44 -26.73 -0.12 -2.85 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 10 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 11 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 12 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 13 N -0.91 -28.42 13.96 55.43 0.77 -27.64 16 14 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 C 0.05 0.72 5.27 -3.77 -0.02 0.70 16 19 C 0.05 0.63 4.77 -3.77 -0.02 0.61 16 20 N -0.52 -6.03 4.73 -227.93 -1.08 -7.11 16 21 C 0.09 0.82 5.17 -4.98 -0.03 0.80 16 22 C -0.12 -1.10 3.99 -104.63 -0.42 -1.52 16 23 C -0.11 -1.00 7.81 -39.59 -0.31 -1.31 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 27 C -0.11 -1.00 8.11 -39.58 -0.32 -1.32 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.62 6.89 -51.93 -0.36 0.26 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.57 4.14 -51.93 -0.22 0.35 16 33 H 0.08 1.07 6.77 -51.93 -0.35 0.72 16 34 H 0.05 0.84 6.45 -51.93 -0.33 0.50 16 35 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.15 6.44 -51.92 -0.33 0.81 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 39 H 0.01 0.35 7.18 -51.93 -0.37 -0.03 16 40 H 0.01 0.24 7.58 -51.93 -0.39 -0.15 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.05 0.79 6.63 -51.93 -0.34 0.45 16 43 H 0.08 1.00 8.11 -51.93 -0.42 0.57 16 44 H 0.07 0.77 8.12 -51.94 -0.42 0.35 16 45 H 0.05 0.57 6.08 -51.93 -0.32 0.25 16 46 H 0.09 0.76 6.12 -51.93 -0.32 0.44 16 47 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 48 H 0.12 0.99 7.67 -52.49 -0.40 0.58 16 49 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 50 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 51 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 52 H 0.12 1.00 5.99 -52.49 -0.31 0.69 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -31.46 382.45 -12.21 -43.67 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.97 Total: 0.22 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -2.88 Total: -23.09 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -1.46 Total: -43.97 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.46 -12.21 -43.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183746563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.911 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds