Wall clock time and date at job start Tue Mar 31 2020 11:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47416 * 2 1 4 4 H 1.08997 * 109.48697 * 55.49320 * 3 2 1 5 5 C 1.53051 * 109.48769 * 295.42935 * 3 2 1 6 6 N 1.46952 * 109.36618 * 181.63071 * 5 3 2 7 7 C 1.46899 * 111.00257 * 183.19009 * 6 5 3 8 8 C 1.53000 * 109.47079 * 302.24521 * 7 6 5 9 9 C 1.53003 * 109.47306 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47212 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99865 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00029 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00108 * 179.97438 * 12 10 9 14 14 Si 1.86792 * 120.00132 * 0.27789 * 12 10 9 15 15 H 1.48505 * 109.47256 * 269.72479 * 14 12 10 16 16 H 1.48506 * 109.47388 * 29.72022 * 14 12 10 17 17 H 1.48495 * 109.47644 * 149.72524 * 14 12 10 18 18 C 1.46951 * 110.87896 * 59.32040 * 6 5 3 19 19 C 1.53048 * 109.36777 * 300.67925 * 18 6 5 20 20 N 1.46951 * 109.48968 * 175.53872 * 3 2 1 21 21 C 1.46899 * 111.00083 * 303.15619 * 20 3 2 22 22 C 1.50702 * 109.46646 * 300.94365 * 21 20 3 23 23 C 1.38230 * 120.00421 * 274.95271 * 22 21 20 24 24 C 1.38231 * 120.00002 * 179.79210 * 23 22 21 25 25 C 1.38236 * 120.00353 * 0.46486 * 24 23 22 26 26 C 1.38241 * 119.99469 * 359.76848 * 25 24 23 27 27 C 1.38235 * 119.99380 * 95.23469 * 22 21 20 28 28 H 1.09000 * 109.46887 * 305.79071 * 1 2 3 29 29 H 1.09001 * 109.47097 * 65.79254 * 1 2 3 30 30 H 1.08999 * 109.46739 * 185.79390 * 1 2 3 31 31 H 1.09001 * 109.47064 * 239.99628 * 2 1 3 32 32 H 1.09004 * 109.47568 * 120.00171 * 2 1 3 33 33 H 1.09003 * 109.49007 * 61.65946 * 5 3 2 34 34 H 1.09002 * 109.49116 * 301.60126 * 5 3 2 35 35 H 1.08996 * 109.47489 * 182.24814 * 7 6 5 36 36 H 1.09005 * 109.47104 * 62.23990 * 7 6 5 37 37 H 1.09010 * 109.46923 * 59.99952 * 8 7 6 38 38 H 1.09001 * 109.47255 * 300.00189 * 8 7 6 39 39 H 1.09001 * 109.46828 * 60.00003 * 9 8 7 40 40 H 1.08991 * 109.47222 * 299.99923 * 9 8 7 41 41 H 0.96998 * 120.00133 * 179.97438 * 13 12 10 42 42 H 1.09002 * 109.49396 * 60.65113 * 18 6 5 43 43 H 1.09000 * 109.48725 * 180.69161 * 18 6 5 44 44 H 1.08989 * 109.49254 * 178.37192 * 19 18 6 45 45 H 1.09005 * 109.48655 * 298.41613 * 19 18 6 46 46 H 1.08990 * 109.47226 * 60.94521 * 21 20 3 47 47 H 1.09007 * 109.46799 * 180.94913 * 21 20 3 48 48 H 1.08001 * 119.99794 * 0.02562 * 23 22 21 49 49 H 1.08004 * 120.00241 * 180.25698 * 24 23 22 50 50 H 1.07992 * 120.00454 * 179.79027 * 25 24 23 51 51 H 1.07998 * 120.00023 * 179.97438 * 26 25 24 52 52 H 1.07997 * 120.00409 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6125 1.9794 0.8467 5 6 1.6262 2.1304 -1.3030 6 7 2.1507 3.5031 -1.3173 7 6 1.7104 4.2225 -2.5201 8 6 2.1679 3.4611 -3.7658 9 6 1.7087 4.2100 -5.0186 10 6 2.1588 3.4598 -6.2456 11 1 2.7170 2.5410 -6.1422 12 6 1.8590 3.9470 -7.5001 13 7 2.2523 3.2925 -8.5710 14 14 0.9017 5.5409 -7.6788 15 1 -0.5523 5.2425 -7.7257 16 1 1.1887 6.4235 -6.5195 17 1 1.3074 6.2241 -8.9333 18 6 3.6163 3.5049 -1.2096 19 6 4.0302 2.8170 0.0934 20 7 3.5056 1.4443 0.1078 21 6 3.9460 0.7249 1.3105 22 6 3.3519 1.3778 2.5319 23 6 3.9829 2.4623 3.1119 24 6 3.4357 3.0638 4.2297 25 6 2.2625 2.5749 4.7733 26 6 1.6340 1.4873 4.1961 27 6 2.1790 0.8884 3.0757 28 1 -0.3633 0.6010 0.8336 29 1 -0.3633 0.4214 -0.9373 30 1 -0.3633 -1.0224 0.1037 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.5386 2.1559 -1.3713 34 1 2.0311 1.5775 -2.1507 35 1 2.1450 5.2220 -2.5252 36 1 0.6230 4.2990 -2.5200 37 1 1.7332 2.4615 -3.7608 38 1 3.2552 3.3845 -3.7659 39 1 2.1430 5.2098 -5.0238 40 1 0.6215 4.2862 -5.0183 41 1 2.0411 3.6350 -9.4535 42 1 4.0439 2.9677 -2.0562 43 1 3.9796 4.5325 -1.2100 44 1 5.1177 2.7915 0.1616 45 1 3.6256 3.3701 0.9411 46 1 3.6147 -0.3120 1.2553 47 1 5.0337 0.7560 1.3746 48 1 4.9015 2.8421 2.6895 49 1 3.9265 3.9138 4.6805 50 1 1.8368 3.0427 5.6486 51 1 0.7177 1.1050 4.6209 52 1 1.6882 0.0385 2.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183746563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:05 Heat of formation + Delta-G solvation = 6.131838 kcal Electronic energy + Delta-G solvation = -27390.137815 eV Core-core repulsion = 23967.035748 eV Total energy + Delta-G solvation = -3423.102067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.38469 -39.69737 -37.58131 -35.44495 -34.97696 -33.58722 -32.07699 -31.70967 -30.35717 -29.36637 -27.41630 -25.64302 -25.34537 -23.66249 -23.25724 -22.48123 -22.43537 -21.38722 -20.09353 -18.92308 -17.64642 -17.10743 -16.94023 -16.41488 -16.24420 -16.12589 -15.82931 -15.68374 -15.45448 -15.24428 -14.75361 -14.69162 -14.53781 -14.12019 -13.96585 -13.83742 -13.53365 -13.36198 -13.22563 -12.97231 -12.87489 -12.67635 -12.51584 -12.37694 -12.23107 -12.14242 -11.92627 -11.86026 -11.80872 -11.59725 -11.56207 -11.42202 -11.27203 -11.10196 -10.78137 -9.76235 -9.65069 -9.32329 -9.14475 -8.31468 -6.36330 0.45187 0.53179 1.34694 1.36971 1.49435 2.34948 2.80534 2.98626 3.03646 3.06599 3.77428 3.89390 3.93670 3.95576 4.12104 4.16805 4.18536 4.23094 4.29919 4.32576 4.34999 4.40879 4.49233 4.51848 4.58971 4.62151 4.65990 4.72307 4.80741 4.81841 4.87845 4.89609 4.97484 4.99420 4.99717 5.08870 5.11989 5.15477 5.17193 5.20433 5.35959 5.42359 5.47490 5.52981 5.59374 5.64043 5.65603 5.68438 5.97689 6.04781 6.14845 6.19293 6.21146 6.27988 6.71432 7.28405 8.85716 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.002774 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.260827 B =10090.671060 C =10410.551737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.098 3.902 4 H 0.048 0.952 5 C 0.058 3.942 6 N -0.535 5.535 7 C 0.061 3.939 8 C -0.122 4.122 9 C -0.006 4.006 10 C -0.535 4.535 11 H 0.023 0.977 12 C 0.001 3.999 13 N -0.954 5.954 14 Si 0.956 3.044 15 H -0.265 1.265 16 H -0.244 1.244 17 H -0.283 1.283 18 C 0.050 3.950 19 C 0.062 3.938 20 N -0.535 5.535 21 C 0.091 3.909 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.130 4.130 27 C -0.118 4.118 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.025 0.975 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.021 0.979 40 H 0.020 0.980 41 H 0.267 0.733 42 H 0.026 0.974 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.126 0.874 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.136 0.864 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -2.853 30.338 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.010 4.010 4 H 0.066 0.934 5 C -0.071 4.071 6 N -0.258 5.258 7 C -0.067 4.067 8 C -0.161 4.161 9 C -0.044 4.044 10 C -0.573 4.573 11 H 0.042 0.958 12 C -0.195 4.195 13 N -0.594 5.594 14 Si 0.778 3.222 15 H -0.190 1.190 16 H -0.167 1.167 17 H -0.209 1.209 18 C -0.078 4.078 19 C -0.066 4.066 20 N -0.258 5.258 21 C -0.036 4.036 22 C -0.127 4.127 23 C -0.138 4.138 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.148 4.148 27 C -0.137 4.137 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.144 0.856 49 H 0.152 0.848 50 H 0.154 0.846 51 H 0.154 0.846 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.281 -2.846 30.143 30.279 hybrid contribution -0.125 0.353 -1.029 1.095 sum -0.406 -2.492 29.114 29.224 Atomic orbital electron populations 1.21769 0.94727 1.02435 1.01793 1.21660 0.96431 0.94730 1.02668 1.21598 0.87191 0.96259 0.95956 0.93384 1.22263 0.99718 0.88266 0.96811 1.62535 1.10226 1.15421 1.37592 1.22201 1.00869 0.97334 0.86259 1.21884 0.99583 0.99130 0.95550 1.19440 0.96194 0.95880 0.92890 1.21510 1.35210 1.08794 0.91766 0.95830 1.26102 0.96742 1.01439 0.95260 1.70086 1.48684 1.41949 0.98708 0.85576 0.79016 0.79214 0.78347 1.19004 1.16714 1.20916 1.22229 0.87820 1.00635 0.97163 1.22192 1.00029 0.88154 0.96242 1.62540 1.10300 1.15947 1.37017 1.21331 1.00452 0.98022 0.83843 1.20696 0.96592 0.97564 0.97856 1.21251 1.00345 0.96022 0.96175 1.21406 0.96615 1.00386 0.96464 1.21443 0.95841 0.96879 1.00595 1.21422 1.00528 0.96578 0.96273 1.21339 0.95627 1.00431 0.96297 0.92245 0.93424 0.91302 0.92391 0.90031 0.90378 0.95664 0.90303 0.90440 0.93926 0.94091 0.96056 0.96185 0.92466 0.95603 0.89769 0.89211 0.93412 0.88930 0.89197 0.85626 0.84780 0.84588 0.84643 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.51 71.98 0.68 -1.93 16 2 C -0.12 -2.26 4.83 30.60 0.15 -2.11 16 3 C 0.10 2.26 1.44 44.92 0.06 2.32 16 4 H 0.05 1.18 6.51 -2.39 -0.02 1.16 16 5 C 0.06 1.64 4.05 86.31 0.35 1.99 16 6 N -0.54 -15.61 4.92 -895.74 -4.40 -20.02 16 7 C 0.06 1.98 5.38 86.30 0.46 2.45 16 8 C -0.12 -5.00 4.44 30.60 0.14 -4.86 16 9 C -0.01 -0.29 4.04 29.85 0.12 -0.17 16 10 C -0.53 -32.11 9.66 25.60 0.25 -31.86 16 11 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 12 C 0.00 0.06 5.47 84.65 0.46 0.52 16 13 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16 14 Si 0.96 45.08 27.47 68.60 1.88 46.97 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.24 -10.59 6.53 99.48 0.65 -9.94 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 18 C 0.05 1.36 5.27 86.31 0.45 1.82 16 19 C 0.06 1.38 4.77 86.31 0.41 1.79 16 20 N -0.54 -11.94 4.73 -875.05 -4.14 -16.08 16 21 C 0.09 1.58 5.17 85.56 0.44 2.03 16 22 C -0.13 -2.18 3.99 -19.87 -0.08 -2.26 16 23 C -0.12 -2.01 7.81 22.27 0.17 -1.84 16 24 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 25 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 26 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 27 C -0.12 -1.95 8.11 22.27 0.18 -1.77 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.95 6.89 -2.39 -0.02 0.94 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.30 4.14 -2.39 -0.01 1.29 16 33 H 0.08 2.16 6.77 -2.39 -0.02 2.15 16 34 H 0.03 0.85 6.45 -2.39 -0.02 0.83 16 35 H 0.08 2.42 8.10 -2.39 -0.02 2.40 16 36 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.04 1.82 6.44 -2.38 -0.02 1.81 16 38 H 0.04 1.76 6.62 -2.39 -0.02 1.74 16 39 H 0.02 0.99 7.18 -2.39 -0.02 0.98 16 40 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 41 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 42 H 0.03 0.83 6.63 -2.39 -0.02 0.82 16 43 H 0.08 2.13 8.11 -2.39 -0.02 2.11 16 44 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 45 H 0.05 1.08 6.08 -2.38 -0.01 1.06 16 46 H 0.09 1.49 6.12 -2.39 -0.01 1.47 16 47 H 0.09 1.42 8.09 -2.38 -0.02 1.40 16 48 H 0.13 1.86 7.67 -2.91 -0.02 1.84 16 49 H 0.13 1.59 8.06 -2.91 -0.02 1.56 16 50 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 51 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 52 H 0.13 1.85 5.99 -2.91 -0.02 1.83 16 Total: -1.00 -69.14 382.45 -0.61 -69.75 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.82 Total: 19.70 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 4.93 Total: -39.16 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -8.25 Total: -97.25 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -69.14 -0.61 -69.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183746563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.884 kcal (2) G-P(sol) polarization free energy of solvation -69.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds