Wall clock time and date at job start Tue Mar 31 2020 11:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47337 * 2 1 4 4 H 1.08996 * 109.48725 * 302.55166 * 3 2 1 5 5 C 1.53053 * 109.48646 * 62.59269 * 3 2 1 6 6 N 1.46962 * 109.36321 * 178.37132 * 5 3 2 7 7 C 1.46897 * 111.00001 * 176.81464 * 6 5 3 8 8 C 1.52995 * 109.47220 * 169.99812 * 7 6 5 9 9 C 1.53002 * 109.47124 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46941 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00179 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99569 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99431 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00383 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46666 * 90.00386 * 14 12 10 16 16 H 1.48498 * 109.47006 * 210.00187 * 14 12 10 17 17 H 1.48500 * 109.46806 * 330.00398 * 14 12 10 18 18 C 1.46959 * 110.87608 * 300.67676 * 6 5 3 19 19 C 1.53052 * 109.36231 * 59.32693 * 18 6 5 20 20 N 1.46952 * 109.48930 * 182.48414 * 3 2 1 21 21 C 1.46897 * 110.99857 * 56.84692 * 20 3 2 22 22 C 1.50703 * 109.47068 * 186.96471 * 21 20 3 23 23 C 1.38239 * 119.99867 * 269.72867 * 22 21 20 24 24 C 1.38233 * 119.99721 * 179.76730 * 23 22 21 25 25 C 1.38238 * 120.00283 * 0.47929 * 24 23 22 26 26 C 1.38237 * 119.99746 * 359.79320 * 25 24 23 27 27 C 1.38232 * 119.99932 * 359.95865 * 26 25 24 28 28 H 1.09006 * 109.47617 * 173.99105 * 1 2 3 29 29 H 1.09000 * 109.47480 * 293.98999 * 1 2 3 30 30 H 1.08998 * 109.47176 * 53.99161 * 1 2 3 31 31 H 1.08998 * 109.47149 * 239.99953 * 2 1 3 32 32 H 1.08997 * 109.47135 * 120.00277 * 2 1 3 33 33 H 1.09000 * 109.48936 * 58.40072 * 5 3 2 34 34 H 1.09001 * 109.50833 * 298.34719 * 5 3 2 35 35 H 1.09003 * 109.47198 * 49.99248 * 7 6 5 36 36 H 1.09001 * 109.46631 * 290.00034 * 7 6 5 37 37 H 1.09001 * 109.46991 * 59.99551 * 8 7 6 38 38 H 1.08998 * 109.46998 * 299.99760 * 8 7 6 39 39 H 1.08994 * 109.46914 * 60.00240 * 9 8 7 40 40 H 1.08998 * 109.47253 * 299.99930 * 9 8 7 41 41 H 0.97010 * 119.99684 * 179.97438 * 13 12 10 42 42 H 1.08997 * 109.48763 * 179.28534 * 18 6 5 43 43 H 1.08989 * 109.49268 * 299.35777 * 18 6 5 44 44 H 1.09005 * 109.48803 * 181.62679 * 19 18 6 45 45 H 1.09000 * 109.49281 * 61.56337 * 19 18 6 46 46 H 1.08994 * 109.47471 * 306.96111 * 21 20 3 47 47 H 1.09003 * 109.47379 * 66.96722 * 21 20 3 48 48 H 1.07995 * 119.99878 * 359.97438 * 23 22 21 49 49 H 1.08006 * 119.99894 * 180.25225 * 24 23 22 50 50 H 1.07997 * 120.00474 * 179.77218 * 25 24 23 51 51 H 1.07994 * 119.99765 * 179.97438 * 26 25 24 52 52 H 1.07995 * 120.00141 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6400 1.9696 -0.8661 5 6 1.5840 2.1452 1.2809 6 7 2.1081 3.5182 1.2964 7 6 1.6290 4.2512 2.4758 8 6 2.3830 5.5773 2.5931 9 6 1.8836 6.3411 3.8212 10 6 2.6266 7.6470 3.9369 11 1 3.3795 7.9065 3.2074 12 6 2.3454 8.5105 4.9744 13 7 2.9935 9.6505 5.0751 14 14 1.0427 8.0621 6.2359 15 1 1.6735 7.3178 7.3555 16 1 0.4122 9.3009 6.7582 17 1 0.0071 7.2109 5.5969 18 6 3.5764 3.5190 1.2364 19 6 4.0323 2.8162 -0.0445 20 7 3.5083 1.4433 -0.0600 21 6 3.9873 0.7103 -1.2395 22 6 5.4879 0.5850 -1.1778 23 6 6.2867 1.5568 -1.7510 24 6 7.6631 1.4444 -1.6902 25 6 8.2407 0.3551 -1.0650 26 6 7.4418 -0.6195 -0.4968 27 6 6.0655 -0.5044 -0.5531 28 1 -0.3634 -1.0220 -0.1076 29 1 -0.3634 0.4178 0.9389 30 1 -0.3633 0.6042 -0.8313 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9611 1.6022 2.1476 34 1 0.4948 2.1714 1.3138 35 1 1.8035 3.6536 3.3706 36 1 0.5619 4.4478 2.3727 37 1 2.2084 6.1748 1.6982 38 1 3.4501 5.3807 2.6962 39 1 2.0578 5.7438 4.7161 40 1 0.8165 6.5377 3.7176 41 1 2.7954 10.2582 5.8048 42 1 3.9398 4.5466 1.2364 43 1 3.9761 2.9916 2.1024 44 1 5.1216 2.7901 -0.0770 45 1 3.6553 3.3593 -0.9112 46 1 3.5402 -0.2836 -1.2559 47 1 3.7047 1.2509 -2.1428 48 1 5.8354 2.4056 -2.2432 49 1 8.2872 2.2057 -2.1344 50 1 9.3160 0.2654 -1.0207 51 1 7.8931 -1.4707 -0.0088 52 1 5.4414 -1.2656 -0.1088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183746586.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:09 Heat of formation + Delta-G solvation = 24.832275 kcal Electronic energy + Delta-G solvation = -26673.836837 eV Core-core repulsion = 23251.545681 eV Total energy + Delta-G solvation = -3422.291155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.17734 -38.98271 -36.42093 -34.26117 -33.59062 -31.97075 -31.13524 -31.02984 -29.50129 -28.07674 -26.06643 -24.79570 -23.92312 -22.81539 -22.30221 -21.31206 -20.97414 -19.73639 -19.53094 -17.00700 -16.72071 -16.32896 -15.79951 -15.49512 -15.33507 -14.87636 -14.67144 -14.40539 -14.30688 -13.87626 -13.82856 -13.62527 -13.43914 -13.30316 -12.89325 -12.58882 -12.55551 -12.44467 -12.00711 -11.82120 -11.71816 -11.54245 -11.38811 -11.22794 -11.16826 -10.94595 -10.92461 -10.78794 -10.44488 -10.40247 -9.93887 -9.64005 -9.53984 -9.13184 -9.08429 -8.96545 -8.51213 -8.42411 -8.06379 -6.01785 -3.99383 1.13777 1.22656 3.32387 3.39586 3.43698 3.46250 3.92826 4.08451 4.47569 4.52312 4.61411 4.68786 4.79621 4.83390 4.90513 4.98332 5.09238 5.21018 5.22862 5.25730 5.31444 5.32303 5.33567 5.43920 5.48473 5.52349 5.58956 5.69572 5.72666 5.76485 5.79227 5.82905 5.84741 5.88375 6.01345 6.05714 6.10642 6.16591 6.18709 6.26999 6.32929 6.42908 6.55620 6.61177 6.79826 6.89930 6.91871 6.97487 7.30306 7.32349 7.37598 7.48101 7.82907 8.57301 9.03525 9.61019 11.11809 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.002841 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.252115 B = 9854.944909 C =11473.422065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.089 3.911 4 H 0.049 0.951 5 C 0.062 3.938 6 N -0.541 5.541 7 C 0.055 3.945 8 C -0.104 4.104 9 C -0.013 4.013 10 C -0.518 4.518 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.880 3.120 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.265 1.265 18 C 0.052 3.948 19 C 0.056 3.944 20 N -0.530 5.530 21 C 0.089 3.911 22 C -0.075 4.075 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.099 4.099 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.009 0.991 40 H 0.016 0.984 41 H 0.262 0.738 42 H 0.092 0.908 43 H 0.039 0.961 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.087 0.913 47 H 0.041 0.959 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 -24.362 -15.031 28.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.019 4.019 4 H 0.067 0.933 5 C -0.066 4.066 6 N -0.265 5.265 7 C -0.072 4.072 8 C -0.142 4.142 9 C -0.050 4.050 10 C -0.556 4.556 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.076 4.076 19 C -0.072 4.072 20 N -0.254 5.254 21 C -0.038 4.038 22 C -0.076 4.076 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.118 4.118 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.057 0.943 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.105 0.895 47 H 0.059 0.941 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.065 -24.182 -14.917 28.578 hybrid contribution -0.554 -0.024 0.833 1.000 sum 2.512 -24.206 -14.085 28.118 Atomic orbital electron populations 1.21794 0.95367 1.01585 1.02253 1.21638 0.95843 0.95746 1.02510 1.21710 0.86764 0.95506 0.97960 0.93276 1.22194 0.99625 0.88647 0.96150 1.62258 1.08822 1.13672 1.41762 1.22293 1.00090 0.95484 0.89379 1.21606 0.98823 0.93393 1.00343 1.19544 0.96667 0.95817 0.93019 1.21145 1.21576 1.01131 1.11756 0.91068 1.25041 0.96035 0.94815 0.97692 1.69925 1.42080 1.10057 1.32358 0.86768 0.82658 0.77914 0.81889 1.20372 1.21422 1.18999 1.22265 0.88036 1.00995 0.96322 1.22281 0.99950 0.87222 0.97735 1.62196 1.08584 1.15435 1.39219 1.21124 0.91141 0.99719 0.91865 1.19750 0.94992 0.94884 0.97966 1.21103 0.93766 0.98470 0.99881 1.21135 0.94867 0.98132 0.99716 1.21151 0.99766 0.94637 0.98509 1.21146 0.93829 0.99166 0.99908 1.20995 0.94717 0.97817 0.98276 0.92680 0.92292 0.92637 0.91741 0.91159 0.94318 0.90391 0.95331 0.91143 0.92001 0.92589 0.97295 0.96617 0.92793 0.88991 0.94259 0.90022 0.94170 0.89509 0.94103 0.86283 0.86114 0.86284 0.86227 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.45 37.16 0.35 -0.83 16 2 C -0.12 -1.02 5.20 -26.73 -0.14 -1.16 16 3 C 0.09 0.96 2.06 -67.66 -0.14 0.83 16 4 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 5 C 0.06 0.79 4.53 -3.76 -0.02 0.77 16 6 N -0.54 -8.12 4.86 -234.47 -1.14 -9.26 16 7 C 0.05 0.92 5.28 -3.83 -0.02 0.90 16 8 C -0.10 -2.10 4.42 -26.73 -0.12 -2.22 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 10 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 11 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 12 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 13 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 14 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 18 C 0.05 0.76 4.93 -3.76 -0.02 0.74 16 19 C 0.06 0.69 5.19 -3.76 -0.02 0.68 16 20 N -0.53 -5.94 4.54 -227.93 -1.03 -6.97 16 21 C 0.09 0.83 4.85 -4.98 -0.02 0.81 16 22 C -0.08 -0.74 4.79 -104.62 -0.50 -1.24 16 23 C -0.11 -1.09 7.86 -39.58 -0.31 -1.40 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 26 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 27 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.48 6.85 -51.93 -0.36 0.12 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.49 6.07 -51.93 -0.32 0.18 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.92 6.72 -51.93 -0.35 0.58 16 35 H 0.03 0.48 8.08 -51.93 -0.42 0.07 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.13 6.26 -51.93 -0.33 0.80 16 39 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.09 1.44 5.99 -51.93 -0.31 1.13 16 43 H 0.04 0.61 8.14 -51.94 -0.42 0.19 16 44 H 0.08 0.99 5.91 -51.93 -0.31 0.69 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.72 5.76 -51.93 -0.30 0.42 16 47 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 48 H 0.12 1.05 8.04 -52.49 -0.42 0.63 16 49 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 50 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 51 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 52 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -31.25 393.49 -12.59 -43.84 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -9.37 Total: -1.57 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -3.08 Total: -21.81 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -1.40 Total: -43.80 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.25 -12.59 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183746586.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.673 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds