Wall clock time and date at job start Tue Mar 31 2020 11:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47337 * 2 1 4 4 H 1.08996 * 109.48725 * 302.55166 * 3 2 1 5 5 C 1.53053 * 109.48646 * 62.59269 * 3 2 1 6 6 N 1.46962 * 109.36321 * 178.37132 * 5 3 2 7 7 C 1.46897 * 111.00001 * 176.81464 * 6 5 3 8 8 C 1.52995 * 109.47220 * 169.99812 * 7 6 5 9 9 C 1.53002 * 109.47124 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46941 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00179 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99569 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99431 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00383 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46666 * 90.00386 * 14 12 10 16 16 H 1.48498 * 109.47006 * 210.00187 * 14 12 10 17 17 H 1.48500 * 109.46806 * 330.00398 * 14 12 10 18 18 C 1.46959 * 110.87608 * 300.67676 * 6 5 3 19 19 C 1.53052 * 109.36231 * 59.32693 * 18 6 5 20 20 N 1.46952 * 109.48930 * 182.48414 * 3 2 1 21 21 C 1.46897 * 110.99857 * 56.84692 * 20 3 2 22 22 C 1.50703 * 109.47068 * 186.96471 * 21 20 3 23 23 C 1.38239 * 119.99867 * 269.72867 * 22 21 20 24 24 C 1.38233 * 119.99721 * 179.76730 * 23 22 21 25 25 C 1.38238 * 120.00283 * 0.47929 * 24 23 22 26 26 C 1.38237 * 119.99746 * 359.79320 * 25 24 23 27 27 C 1.38232 * 119.99932 * 359.95865 * 26 25 24 28 28 H 1.09006 * 109.47617 * 173.99105 * 1 2 3 29 29 H 1.09000 * 109.47480 * 293.98999 * 1 2 3 30 30 H 1.08998 * 109.47176 * 53.99161 * 1 2 3 31 31 H 1.08998 * 109.47149 * 239.99953 * 2 1 3 32 32 H 1.08997 * 109.47135 * 120.00277 * 2 1 3 33 33 H 1.09000 * 109.48936 * 58.40072 * 5 3 2 34 34 H 1.09001 * 109.50833 * 298.34719 * 5 3 2 35 35 H 1.09003 * 109.47198 * 49.99248 * 7 6 5 36 36 H 1.09001 * 109.46631 * 290.00034 * 7 6 5 37 37 H 1.09001 * 109.46991 * 59.99551 * 8 7 6 38 38 H 1.08998 * 109.46998 * 299.99760 * 8 7 6 39 39 H 1.08994 * 109.46914 * 60.00240 * 9 8 7 40 40 H 1.08998 * 109.47253 * 299.99930 * 9 8 7 41 41 H 0.97010 * 119.99684 * 179.97438 * 13 12 10 42 42 H 1.08997 * 109.48763 * 179.28534 * 18 6 5 43 43 H 1.08989 * 109.49268 * 299.35777 * 18 6 5 44 44 H 1.09005 * 109.48803 * 181.62679 * 19 18 6 45 45 H 1.09000 * 109.49281 * 61.56337 * 19 18 6 46 46 H 1.08994 * 109.47471 * 306.96111 * 21 20 3 47 47 H 1.09003 * 109.47379 * 66.96722 * 21 20 3 48 48 H 1.07995 * 119.99878 * 359.97438 * 23 22 21 49 49 H 1.08006 * 119.99894 * 180.25225 * 24 23 22 50 50 H 1.07997 * 120.00474 * 179.77218 * 25 24 23 51 51 H 1.07994 * 119.99765 * 179.97438 * 26 25 24 52 52 H 1.07995 * 120.00141 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6400 1.9696 -0.8661 5 6 1.5840 2.1452 1.2809 6 7 2.1081 3.5182 1.2964 7 6 1.6290 4.2512 2.4758 8 6 2.3830 5.5773 2.5931 9 6 1.8836 6.3411 3.8212 10 6 2.6266 7.6470 3.9369 11 1 3.3795 7.9065 3.2074 12 6 2.3454 8.5105 4.9744 13 7 2.9935 9.6505 5.0751 14 14 1.0427 8.0621 6.2359 15 1 1.6735 7.3178 7.3555 16 1 0.4122 9.3009 6.7582 17 1 0.0071 7.2109 5.5969 18 6 3.5764 3.5190 1.2364 19 6 4.0323 2.8162 -0.0445 20 7 3.5083 1.4433 -0.0600 21 6 3.9873 0.7103 -1.2395 22 6 5.4879 0.5850 -1.1778 23 6 6.2867 1.5568 -1.7510 24 6 7.6631 1.4444 -1.6902 25 6 8.2407 0.3551 -1.0650 26 6 7.4418 -0.6195 -0.4968 27 6 6.0655 -0.5044 -0.5531 28 1 -0.3634 -1.0220 -0.1076 29 1 -0.3634 0.4178 0.9389 30 1 -0.3633 0.6042 -0.8313 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9611 1.6022 2.1476 34 1 0.4948 2.1714 1.3138 35 1 1.8035 3.6536 3.3706 36 1 0.5619 4.4478 2.3727 37 1 2.2084 6.1748 1.6982 38 1 3.4501 5.3807 2.6962 39 1 2.0578 5.7438 4.7161 40 1 0.8165 6.5377 3.7176 41 1 2.7954 10.2582 5.8048 42 1 3.9398 4.5466 1.2364 43 1 3.9761 2.9916 2.1024 44 1 5.1216 2.7901 -0.0770 45 1 3.6553 3.3593 -0.9112 46 1 3.5402 -0.2836 -1.2559 47 1 3.7047 1.2509 -2.1428 48 1 5.8354 2.4056 -2.2432 49 1 8.2872 2.2057 -2.1344 50 1 9.3160 0.2654 -1.0207 51 1 7.8931 -1.4707 -0.0088 52 1 5.4414 -1.2656 -0.1088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183746586.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:08 Heat of formation + Delta-G solvation = 6.690977 kcal Electronic energy + Delta-G solvation = -26674.623502 eV Core-core repulsion = 23251.545681 eV Total energy + Delta-G solvation = -3423.077821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06281 -39.80366 -37.60727 -35.48640 -35.00872 -33.61446 -32.24847 -31.74168 -30.41614 -29.49252 -27.36028 -25.70066 -25.12188 -23.74203 -23.32095 -22.54409 -21.91077 -21.07039 -20.61373 -18.89201 -17.68567 -17.38924 -16.63895 -16.41794 -16.38707 -16.19795 -16.00003 -15.53894 -15.28102 -15.16177 -14.92493 -14.76877 -14.43082 -14.22195 -14.11499 -13.81975 -13.53675 -13.39829 -13.26390 -13.18187 -12.82082 -12.59733 -12.51938 -12.46442 -12.21213 -12.02679 -11.88065 -11.83006 -11.77553 -11.57840 -11.53645 -11.45002 -11.25084 -11.01437 -10.76932 -9.77165 -9.67955 -9.37174 -9.21014 -8.30142 -6.34497 0.44662 0.54371 1.35255 1.37373 1.49771 2.35923 2.70309 2.91096 3.05120 3.14143 3.77715 3.79260 3.91578 3.97256 4.08277 4.17745 4.20056 4.20836 4.29940 4.30986 4.37629 4.39792 4.44102 4.50843 4.60749 4.62482 4.64944 4.69233 4.73975 4.80433 4.83751 4.87169 4.92375 4.95178 5.00170 5.05267 5.12681 5.14879 5.19544 5.20569 5.33900 5.43647 5.47838 5.57438 5.59691 5.64824 5.66238 5.72176 5.95424 6.00445 6.13353 6.19485 6.20838 6.29236 6.73446 7.30094 8.86910 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.002841 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.252115 B = 9854.944909 C =11473.422065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C 0.092 3.908 4 H 0.042 0.958 5 C 0.063 3.937 6 N -0.546 5.546 7 C 0.066 3.934 8 C -0.093 4.093 9 C -0.009 4.009 10 C -0.533 4.533 11 H 0.029 0.971 12 C 0.002 3.998 13 N -0.953 5.953 14 Si 0.953 3.047 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.244 1.244 18 C 0.054 3.946 19 C 0.066 3.934 20 N -0.534 5.534 21 C 0.093 3.907 22 C -0.088 4.088 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.130 4.130 27 C -0.109 4.109 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.017 0.983 40 H 0.022 0.978 41 H 0.266 0.734 42 H 0.074 0.926 43 H 0.028 0.972 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.102 0.898 47 H 0.042 0.958 48 H 0.120 0.880 49 H 0.133 0.867 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 -27.030 -14.916 30.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.016 4.016 4 H 0.060 0.940 5 C -0.065 4.065 6 N -0.270 5.270 7 C -0.062 4.062 8 C -0.131 4.131 9 C -0.046 4.046 10 C -0.571 4.571 11 H 0.047 0.953 12 C -0.195 4.195 13 N -0.594 5.594 14 Si 0.776 3.224 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.168 1.168 18 C -0.074 4.074 19 C -0.062 4.062 20 N -0.259 5.259 21 C -0.033 4.033 22 C -0.088 4.088 23 C -0.145 4.145 24 C -0.150 4.150 25 C -0.148 4.148 26 C -0.148 4.148 27 C -0.128 4.128 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.101 0.899 45 H 0.054 0.946 46 H 0.120 0.880 47 H 0.060 0.940 48 H 0.138 0.862 49 H 0.151 0.849 50 H 0.155 0.845 51 H 0.156 0.844 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.756 -26.876 -14.826 30.745 hybrid contribution -0.026 0.840 0.725 1.110 sum 1.730 -26.036 -14.101 29.660 Atomic orbital electron populations 1.21780 0.94581 1.02438 1.01997 1.21586 0.96417 0.93924 1.03004 1.21714 0.86507 0.96814 0.96560 0.93964 1.22284 1.00199 0.87085 0.96941 1.62261 1.08914 1.15263 1.40590 1.22078 0.99904 0.93767 0.90421 1.21412 0.98837 0.94789 0.98055 1.19479 0.96269 0.93877 0.95023 1.21497 1.21203 1.03495 1.10928 0.95273 1.26068 0.98678 0.94511 1.00215 1.70083 1.44176 1.11518 1.33593 0.85609 0.79745 0.78162 0.78844 1.19181 1.20879 1.16778 1.22197 0.87959 1.00128 0.97125 1.22106 0.99960 0.87960 0.96167 1.62198 1.08865 1.14448 1.40398 1.21141 0.91114 1.00086 0.91006 1.19857 0.95174 0.95284 0.98507 1.21242 0.94259 0.98714 1.00299 1.21389 0.94938 0.98760 0.99875 1.21453 1.00894 0.94393 0.98059 1.21442 0.93791 0.99781 0.99738 1.21207 0.95298 0.97979 0.98304 0.91338 0.92728 0.92675 0.90454 0.91387 0.94894 0.89298 0.95060 0.90278 0.93206 0.93312 0.96514 0.95974 0.92481 0.90765 0.95357 0.89943 0.94601 0.88004 0.94029 0.86164 0.84883 0.84482 0.84385 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.45 71.98 0.68 -1.26 16 2 C -0.11 -1.64 5.20 30.59 0.16 -1.48 16 3 C 0.09 1.85 2.06 44.92 0.09 1.94 16 4 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 5 C 0.06 1.49 4.53 86.31 0.39 1.88 16 6 N -0.55 -16.00 4.86 -895.72 -4.35 -20.35 16 7 C 0.07 2.16 5.28 86.30 0.46 2.61 16 8 C -0.09 -3.79 4.42 30.59 0.14 -3.66 16 9 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 10 C -0.53 -31.75 9.66 25.60 0.25 -31.50 16 11 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 12 C 0.00 0.10 5.47 84.65 0.46 0.57 16 13 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 14 Si 0.95 45.04 27.47 68.60 1.88 46.92 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.24 -10.65 6.54 99.48 0.65 -10.00 16 18 C 0.05 1.60 4.93 86.31 0.43 2.02 16 19 C 0.07 1.63 5.19 86.31 0.45 2.08 16 20 N -0.53 -11.34 4.54 -875.02 -3.97 -15.31 16 21 C 0.09 1.62 4.85 85.56 0.41 2.03 16 22 C -0.09 -1.63 4.79 -19.86 -0.10 -1.72 16 23 C -0.13 -2.36 7.86 22.27 0.18 -2.19 16 24 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 25 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 26 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 27 C -0.11 -1.89 9.70 22.27 0.22 -1.68 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.05 0.76 6.85 -2.39 -0.02 0.74 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.96 6.07 -2.39 -0.01 0.94 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 1.92 6.72 -2.39 -0.02 1.90 16 35 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 36 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 2.03 6.26 -2.39 -0.01 2.01 16 39 H 0.02 0.77 7.57 -2.39 -0.02 0.76 16 40 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 41 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 42 H 0.07 2.42 5.99 -2.39 -0.01 2.40 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 2.01 5.91 -2.38 -0.01 2.00 16 45 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.10 1.45 5.76 -2.39 -0.01 1.43 16 47 H 0.04 0.72 8.08 -2.39 -0.02 0.70 16 48 H 0.12 2.11 8.04 -2.91 -0.02 2.09 16 49 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 50 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 51 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 52 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -68.05 393.49 -0.34 -68.39 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.80 Total: 17.57 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 5.00 Total: -36.40 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -8.03 Total: -96.49 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -68.05 -0.34 -68.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183746586.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.085 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds