Wall clock time and date at job start Tue Mar 31 2020 11:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.46968 * 2 1 4 4 C 1.46897 * 111.00061 * 196.04911 * 3 2 1 5 5 C 1.53004 * 109.47217 * 66.04137 * 4 3 2 6 6 C 1.52991 * 109.47095 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47270 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00022 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00576 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99585 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00238 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46834 * 179.97438 * 11 9 7 13 13 H 1.48493 * 109.47338 * 299.99911 * 11 9 7 14 14 H 1.48502 * 109.46987 * 60.00305 * 11 9 7 15 15 C 1.46900 * 111.00190 * 72.09386 * 3 2 1 16 16 H 1.09000 * 110.64306 * 313.28903 * 15 3 2 17 17 C 1.54592 * 110.72455 * 190.13573 * 15 3 2 18 18 C 1.53999 * 105.13700 * 219.68698 * 17 15 3 19 19 N 1.47901 * 107.05999 * 358.77325 * 18 17 15 20 20 C 1.46898 * 111.00254 * 145.84571 * 19 18 17 21 21 C 1.50701 * 109.47058 * 288.10548 * 20 19 18 22 22 C 1.38234 * 120.00084 * 265.02843 * 21 20 19 23 23 C 1.38233 * 119.99727 * 179.81328 * 22 21 20 24 24 C 1.38231 * 120.00357 * 0.41004 * 23 22 21 25 25 C 1.38237 * 119.99931 * 359.82141 * 24 23 22 26 26 C 1.38233 * 119.99766 * 359.97438 * 25 24 23 27 27 C 1.48536 * 105.81909 * 25.33150 * 19 18 17 28 28 H 1.08999 * 109.47015 * 181.38615 * 1 2 3 29 29 H 1.09005 * 109.46688 * 301.37871 * 1 2 3 30 30 H 1.08997 * 109.47408 * 61.37794 * 1 2 3 31 31 H 1.08997 * 109.46600 * 240.00163 * 2 1 3 32 32 H 1.08995 * 109.47235 * 120.00375 * 2 1 3 33 33 H 1.09007 * 109.47272 * 306.04630 * 4 3 2 34 34 H 1.08994 * 109.47394 * 186.04825 * 4 3 2 35 35 H 1.09009 * 109.46578 * 60.00625 * 5 4 3 36 36 H 1.08994 * 109.47500 * 300.00623 * 5 4 3 37 37 H 1.09007 * 109.47193 * 60.00616 * 6 5 4 38 38 H 1.09002 * 109.47827 * 300.00653 * 6 5 4 39 39 H 0.97000 * 119.99818 * 359.97438 * 10 9 7 40 40 H 1.08995 * 110.31082 * 338.60041 * 17 15 3 41 41 H 1.09001 * 110.30633 * 100.77327 * 17 15 3 42 42 H 1.08993 * 109.91847 * 118.13047 * 18 17 15 43 43 H 1.09002 * 109.91332 * 239.42153 * 18 17 15 44 44 H 1.09006 * 109.46481 * 48.10398 * 20 19 18 45 45 H 1.08997 * 109.47399 * 168.10012 * 20 19 18 46 46 H 1.07995 * 119.99552 * 359.97438 * 22 21 20 47 47 H 1.08002 * 119.99457 * 180.20885 * 23 22 21 48 48 H 1.07996 * 120.00228 * 179.79024 * 24 23 22 49 49 H 1.08004 * 119.99922 * 179.97438 * 25 24 23 50 50 H 1.08003 * 119.99924 * 179.97438 * 26 25 24 51 51 H 1.08997 * 110.66599 * 202.35918 * 27 19 18 52 52 H 1.08999 * 110.66161 * 79.22856 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4377 1.4421 -0.3791 5 6 3.5944 1.0005 -1.8357 6 6 5.0712 1.0605 -2.2307 7 6 5.2255 0.6262 -3.6655 8 1 4.3570 0.3368 -4.2385 9 6 6.4754 0.5984 -4.2469 10 7 7.5331 0.9514 -3.5493 11 14 6.6667 0.0594 -6.0251 12 1 8.1001 0.1178 -6.4086 13 1 6.1694 -1.3316 -6.1770 14 1 5.8825 0.9641 -6.9037 15 6 1.7976 2.0219 1.3050 16 1 0.7831 1.8341 1.6566 17 6 2.0774 3.5403 1.2273 18 6 2.7947 3.8850 2.5458 19 7 2.8831 2.6350 3.3313 20 6 4.1252 2.5920 4.1144 21 6 5.2943 2.3687 3.1902 22 6 5.7725 1.0892 2.9772 23 6 6.8425 0.8840 2.1264 24 6 7.4397 1.9590 1.4951 25 6 6.9645 3.2389 1.7117 26 6 5.8919 3.4437 2.5593 27 6 2.8405 1.5298 2.3397 28 1 -0.3633 -1.0274 0.0249 29 1 -0.3633 0.5351 0.8774 30 1 -0.3634 0.4923 -0.9020 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.0133 0.7779 0.2657 34 1 3.8029 2.4629 -0.2676 35 1 3.0189 1.6647 -2.4806 36 1 3.2293 -0.0204 -1.9472 37 1 5.6471 0.3966 -1.5859 38 1 5.4360 2.0816 -2.1193 39 1 7.4337 1.2316 -2.6260 40 1 2.7215 3.7633 0.3768 41 1 1.1416 4.0939 1.1498 42 1 3.7951 4.2635 2.3363 43 1 2.2207 4.6300 3.0969 44 1 4.2546 3.5369 4.6423 45 1 4.0717 1.7770 4.8362 46 1 5.3084 0.2499 3.4736 47 1 7.2139 -0.1160 1.9575 48 1 8.2777 1.7990 0.8330 49 1 7.4314 4.0789 1.2188 50 1 5.5209 4.4438 2.7288 51 1 2.5090 0.6039 2.8097 52 1 3.8152 1.3966 1.8702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183763083.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:56 Heat of formation + Delta-G solvation = 28.204112 kcal Electronic energy + Delta-G solvation = -28225.911513 eV Core-core repulsion = 24803.766572 eV Total energy + Delta-G solvation = -3422.144941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47538 -38.71532 -36.71154 -34.08829 -32.81370 -31.70487 -30.98980 -30.27557 -29.30403 -27.91721 -25.94650 -25.04267 -22.94191 -22.69123 -22.39324 -21.50177 -20.72069 -20.38140 -18.97932 -16.84940 -16.74799 -16.37533 -16.00081 -15.25381 -15.12178 -14.72753 -14.63475 -14.33967 -13.98804 -13.70850 -13.52885 -13.49651 -13.23579 -13.00812 -12.83159 -12.41228 -12.23215 -12.06541 -11.74649 -11.59069 -11.50313 -11.40058 -11.28563 -11.19631 -11.06263 -10.96610 -10.86318 -10.69197 -10.44904 -10.30509 -10.10282 -9.68295 -9.63929 -8.84674 -8.70211 -8.50144 -8.45799 -8.28892 -8.01396 -6.32802 -4.00739 1.37454 1.44170 3.45140 3.47150 3.65599 3.74140 3.90548 4.26740 4.57163 4.61811 4.66188 4.83735 4.87509 5.00836 5.05474 5.16157 5.21586 5.24679 5.36991 5.40307 5.44250 5.49321 5.50210 5.55984 5.60685 5.65079 5.66737 5.71881 5.82752 5.87634 5.95969 5.99140 6.04380 6.05667 6.07392 6.13366 6.20804 6.31830 6.33220 6.50647 6.52994 6.63477 6.64186 6.68239 6.78728 6.88917 7.02030 7.04670 7.36979 7.39436 7.48996 7.61065 8.27665 8.50902 8.92998 9.71084 11.07837 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.004652 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.683415 B = 6017.176367 C = 7760.321281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.526 5.526 4 C 0.056 3.944 5 C -0.098 4.098 6 C 0.014 3.986 7 C -0.598 4.598 8 H 0.047 0.953 9 C 0.014 3.986 10 N -0.915 5.915 11 Si 1.067 2.933 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.288 1.288 15 C 0.082 3.918 16 H 0.091 0.909 17 C -0.124 4.124 18 C 0.024 3.976 19 N -0.503 5.503 20 C 0.084 3.916 21 C -0.124 4.124 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.106 4.106 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.014 4.014 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.003 0.997 38 H 0.004 0.996 39 H 0.268 0.732 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.116 0.884 47 H 0.121 0.879 48 H 0.125 0.875 49 H 0.121 0.879 50 H 0.118 0.882 51 H 0.072 0.928 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 3.250 16.302 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 N -0.249 5.249 4 C -0.071 4.071 5 C -0.136 4.136 6 C -0.024 4.024 7 C -0.636 4.636 8 H 0.065 0.935 9 C -0.189 4.189 10 N -0.551 5.551 11 Si 0.895 3.105 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.215 1.215 15 C -0.027 4.027 16 H 0.109 0.891 17 C -0.163 4.163 18 C -0.104 4.104 19 N -0.225 5.225 20 C -0.044 4.044 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.134 0.866 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.139 0.861 50 H 0.136 0.864 51 H 0.091 0.909 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.781 3.236 15.131 17.319 hybrid contribution 0.083 -0.185 1.220 1.237 sum -7.698 3.051 16.351 18.328 Atomic orbital electron populations 1.21764 0.95283 1.00955 1.02161 1.22133 0.95684 0.89299 1.01177 1.62235 1.19303 1.16986 1.26421 1.22297 0.86336 1.00656 0.97815 1.21545 0.99750 0.99821 0.92504 1.19140 0.90682 0.95801 0.96734 1.22058 0.95491 1.48762 0.97318 0.93451 1.25813 0.92341 0.95010 1.05735 1.70784 1.31199 1.41984 1.11153 0.83578 0.75987 0.76260 0.74664 1.20816 1.21507 1.21464 1.22630 0.98600 0.93937 0.87561 0.89134 1.22452 1.01021 0.95658 0.97123 1.23050 1.00344 0.93091 0.93877 1.65094 1.32254 1.02778 1.22399 1.21339 0.85313 1.02848 0.94911 1.20452 0.98149 0.93708 1.00288 1.21005 0.96770 0.96206 0.98989 1.21180 0.96175 0.99196 0.96727 1.21266 1.00047 0.92667 0.98453 1.21177 0.96706 0.97417 0.97999 1.21036 0.96293 0.98120 0.97893 1.24198 1.01371 0.94938 0.93772 0.92747 0.93072 0.91963 0.90004 0.95227 0.95255 0.91459 0.92597 0.93321 0.97907 0.97779 0.92213 0.90435 0.90973 0.92688 0.90554 0.90155 0.89998 0.86575 0.86070 0.85681 0.86054 0.86374 0.90930 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 10.00 37.16 0.37 -1.32 16 2 C 0.04 0.63 5.49 -3.82 -0.02 0.61 16 3 N -0.53 -7.99 4.45 -224.43 -1.00 -8.99 16 4 C 0.06 1.00 3.77 -3.82 -0.01 0.98 16 5 C -0.10 -2.11 5.12 -26.73 -0.14 -2.24 16 6 C 0.01 0.36 4.28 -27.89 -0.12 0.24 16 7 C -0.60 -17.34 9.11 -34.44 -0.31 -17.65 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 9 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 10 N -0.91 -28.08 13.65 55.43 0.76 -27.33 16 11 Si 1.07 25.63 29.90 -169.99 -5.08 20.55 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 15 C 0.08 1.09 2.98 -65.85 -0.20 0.89 16 16 H 0.09 1.15 6.42 -51.93 -0.33 0.82 16 17 C -0.12 -1.56 6.38 -25.37 -0.16 -1.72 16 18 C 0.02 0.28 6.45 -2.75 -0.02 0.26 16 19 N -0.50 -5.93 5.54 -231.89 -1.28 -7.21 16 20 C 0.08 0.90 5.72 -4.98 -0.03 0.87 16 21 C -0.12 -1.53 3.76 -104.62 -0.39 -1.92 16 22 C -0.11 -1.43 7.93 -39.58 -0.31 -1.75 16 23 C -0.11 -1.61 10.05 -39.59 -0.40 -2.01 16 24 C -0.11 -1.56 10.05 -39.58 -0.40 -1.96 16 25 C -0.11 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.11 -1.45 8.36 -39.58 -0.33 -1.78 16 27 C -0.01 -0.18 4.75 -1.89 -0.01 -0.19 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.27 5.94 -51.93 -0.31 0.96 16 32 H 0.03 0.40 7.36 -51.93 -0.38 0.02 16 33 H 0.03 0.55 6.47 -51.92 -0.34 0.21 16 34 H 0.07 1.25 6.17 -51.93 -0.32 0.93 16 35 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 36 H 0.05 1.04 6.28 -51.93 -0.33 0.71 16 37 H 0.00 0.07 8.01 -51.92 -0.42 -0.34 16 38 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 39 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 40 H 0.08 1.12 6.23 -51.93 -0.32 0.79 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.64 4.59 -51.93 -0.24 0.40 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.77 8.03 -51.93 -0.42 0.35 16 45 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 46 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 48 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 49 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 50 H 0.12 1.29 6.72 -52.48 -0.35 0.94 16 51 H 0.07 0.94 7.94 -51.93 -0.41 0.52 16 52 H 0.08 1.13 2.56 -51.93 -0.13 1.00 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -30.70 387.79 -12.52 -43.22 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.78 Total: 4.25 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: -2.98 Total: -30.33 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -1.53 Total: -43.53 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.70 -12.52 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183763083.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.424 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds