Wall clock time and date at job start Tue Mar 31 2020 11:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.46968 * 2 1 4 4 C 1.46897 * 111.00061 * 196.04911 * 3 2 1 5 5 C 1.53004 * 109.47217 * 66.04137 * 4 3 2 6 6 C 1.52991 * 109.47095 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47270 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00022 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00576 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99585 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00238 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46834 * 179.97438 * 11 9 7 13 13 H 1.48493 * 109.47338 * 299.99911 * 11 9 7 14 14 H 1.48502 * 109.46987 * 60.00305 * 11 9 7 15 15 C 1.46900 * 111.00190 * 72.09386 * 3 2 1 16 16 H 1.09000 * 110.64306 * 313.28903 * 15 3 2 17 17 C 1.54592 * 110.72455 * 190.13573 * 15 3 2 18 18 C 1.53999 * 105.13700 * 219.68698 * 17 15 3 19 19 N 1.47901 * 107.05999 * 358.77325 * 18 17 15 20 20 C 1.46898 * 111.00254 * 145.84571 * 19 18 17 21 21 C 1.50701 * 109.47058 * 288.10548 * 20 19 18 22 22 C 1.38234 * 120.00084 * 265.02843 * 21 20 19 23 23 C 1.38233 * 119.99727 * 179.81328 * 22 21 20 24 24 C 1.38231 * 120.00357 * 0.41004 * 23 22 21 25 25 C 1.38237 * 119.99931 * 359.82141 * 24 23 22 26 26 C 1.38233 * 119.99766 * 359.97438 * 25 24 23 27 27 C 1.48536 * 105.81909 * 25.33150 * 19 18 17 28 28 H 1.08999 * 109.47015 * 181.38615 * 1 2 3 29 29 H 1.09005 * 109.46688 * 301.37871 * 1 2 3 30 30 H 1.08997 * 109.47408 * 61.37794 * 1 2 3 31 31 H 1.08997 * 109.46600 * 240.00163 * 2 1 3 32 32 H 1.08995 * 109.47235 * 120.00375 * 2 1 3 33 33 H 1.09007 * 109.47272 * 306.04630 * 4 3 2 34 34 H 1.08994 * 109.47394 * 186.04825 * 4 3 2 35 35 H 1.09009 * 109.46578 * 60.00625 * 5 4 3 36 36 H 1.08994 * 109.47500 * 300.00623 * 5 4 3 37 37 H 1.09007 * 109.47193 * 60.00616 * 6 5 4 38 38 H 1.09002 * 109.47827 * 300.00653 * 6 5 4 39 39 H 0.97000 * 119.99818 * 359.97438 * 10 9 7 40 40 H 1.08995 * 110.31082 * 338.60041 * 17 15 3 41 41 H 1.09001 * 110.30633 * 100.77327 * 17 15 3 42 42 H 1.08993 * 109.91847 * 118.13047 * 18 17 15 43 43 H 1.09002 * 109.91332 * 239.42153 * 18 17 15 44 44 H 1.09006 * 109.46481 * 48.10398 * 20 19 18 45 45 H 1.08997 * 109.47399 * 168.10012 * 20 19 18 46 46 H 1.07995 * 119.99552 * 359.97438 * 22 21 20 47 47 H 1.08002 * 119.99457 * 180.20885 * 23 22 21 48 48 H 1.07996 * 120.00228 * 179.79024 * 24 23 22 49 49 H 1.08004 * 119.99922 * 179.97438 * 25 24 23 50 50 H 1.08003 * 119.99924 * 179.97438 * 26 25 24 51 51 H 1.08997 * 110.66599 * 202.35918 * 27 19 18 52 52 H 1.08999 * 110.66161 * 79.22856 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4377 1.4421 -0.3791 5 6 3.5944 1.0005 -1.8357 6 6 5.0712 1.0605 -2.2307 7 6 5.2255 0.6262 -3.6655 8 1 4.3570 0.3368 -4.2385 9 6 6.4754 0.5984 -4.2469 10 7 7.5331 0.9514 -3.5493 11 14 6.6667 0.0594 -6.0251 12 1 8.1001 0.1178 -6.4086 13 1 6.1694 -1.3316 -6.1770 14 1 5.8825 0.9641 -6.9037 15 6 1.7976 2.0219 1.3050 16 1 0.7831 1.8341 1.6566 17 6 2.0774 3.5403 1.2273 18 6 2.7947 3.8850 2.5458 19 7 2.8831 2.6350 3.3313 20 6 4.1252 2.5920 4.1144 21 6 5.2943 2.3687 3.1902 22 6 5.7725 1.0892 2.9772 23 6 6.8425 0.8840 2.1264 24 6 7.4397 1.9590 1.4951 25 6 6.9645 3.2389 1.7117 26 6 5.8919 3.4437 2.5593 27 6 2.8405 1.5298 2.3397 28 1 -0.3633 -1.0274 0.0249 29 1 -0.3633 0.5351 0.8774 30 1 -0.3634 0.4923 -0.9020 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.0133 0.7779 0.2657 34 1 3.8029 2.4629 -0.2676 35 1 3.0189 1.6647 -2.4806 36 1 3.2293 -0.0204 -1.9472 37 1 5.6471 0.3966 -1.5859 38 1 5.4360 2.0816 -2.1193 39 1 7.4337 1.2316 -2.6260 40 1 2.7215 3.7633 0.3768 41 1 1.1416 4.0939 1.1498 42 1 3.7951 4.2635 2.3363 43 1 2.2207 4.6300 3.0969 44 1 4.2546 3.5369 4.6423 45 1 4.0717 1.7770 4.8362 46 1 5.3084 0.2499 3.4736 47 1 7.2139 -0.1160 1.9575 48 1 8.2777 1.7990 0.8330 49 1 7.4314 4.0789 1.2188 50 1 5.5209 4.4438 2.7288 51 1 2.5090 0.6039 2.8097 52 1 3.8152 1.3966 1.8702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183763083.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:55 Heat of formation + Delta-G solvation = 10.679835 kcal Electronic energy + Delta-G solvation = -28226.671423 eV Core-core repulsion = 24803.766572 eV Total energy + Delta-G solvation = -3422.904851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50801 -39.83370 -37.89134 -36.08709 -33.92783 -33.43291 -32.03778 -31.44146 -30.39786 -29.22043 -27.44823 -26.26149 -24.78450 -23.75655 -23.48119 -22.80170 -22.15961 -21.43709 -20.20531 -18.89887 -17.87043 -17.50283 -17.12571 -16.36188 -16.30497 -16.10264 -15.72599 -15.68176 -15.45530 -15.06310 -14.92847 -14.79347 -14.51236 -14.27318 -14.07733 -13.75474 -13.64268 -13.27968 -13.03530 -12.86920 -12.70094 -12.57138 -12.43081 -12.39831 -12.31132 -12.24429 -12.18575 -12.02689 -11.87737 -11.85756 -11.72229 -11.36976 -11.28858 -10.66805 -10.54755 -9.90619 -9.76109 -9.42499 -9.25144 -8.69610 -6.39702 0.30846 0.38007 1.50419 1.59030 1.78464 2.54710 2.68046 2.78999 3.14892 3.22591 3.64289 3.67693 3.84914 3.86038 3.94208 4.00398 4.04543 4.12551 4.15981 4.25932 4.28501 4.37240 4.41940 4.49757 4.50886 4.53013 4.61462 4.64214 4.71280 4.74485 4.80182 4.85059 4.89229 4.92765 4.99642 5.01841 5.02559 5.03965 5.09996 5.18224 5.22624 5.36109 5.40115 5.44251 5.47971 5.51208 5.55579 5.80357 5.96786 5.97714 5.99887 6.09663 6.16854 6.23904 6.57486 7.42065 8.70976 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.004652 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.683415 B = 6017.176367 C = 7760.321281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.042 3.958 3 N -0.529 5.529 4 C 0.079 3.921 5 C -0.085 4.085 6 C 0.021 3.979 7 C -0.619 4.619 8 H 0.048 0.952 9 C -0.037 4.037 10 N -0.935 5.935 11 Si 1.116 2.884 12 H -0.282 1.282 13 H -0.269 1.269 14 H -0.269 1.269 15 C 0.083 3.917 16 H 0.105 0.895 17 C -0.124 4.124 18 C 0.026 3.974 19 N -0.498 5.498 20 C 0.086 3.914 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.129 4.129 26 C -0.116 4.116 27 C -0.010 4.010 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.021 0.979 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.049 0.951 37 H -0.017 1.017 38 H -0.018 1.018 39 H 0.255 0.745 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.132 0.868 47 H 0.123 0.877 48 H 0.113 0.887 49 H 0.128 0.872 50 H 0.139 0.861 51 H 0.077 0.923 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 3.385 17.229 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 N -0.253 5.253 4 C -0.048 4.048 5 C -0.123 4.123 6 C -0.016 4.016 7 C -0.657 4.657 8 H 0.066 0.934 9 C -0.234 4.234 10 N -0.572 5.572 11 Si 0.936 3.064 12 H -0.207 1.207 13 H -0.194 1.194 14 H -0.195 1.195 15 C -0.026 4.026 16 H 0.123 0.877 17 C -0.162 4.162 18 C -0.102 4.102 19 N -0.220 5.220 20 C -0.042 4.042 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.134 4.134 27 C -0.139 4.139 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.001 0.999 38 H 0.001 0.999 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.149 0.851 47 H 0.141 0.859 48 H 0.131 0.869 49 H 0.146 0.854 50 H 0.156 0.844 51 H 0.095 0.905 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.072 3.376 16.087 19.278 hybrid contribution 0.766 -0.216 0.968 1.253 sum -9.306 3.160 17.055 19.684 Atomic orbital electron populations 1.21700 0.93044 1.02208 1.02325 1.22192 0.97449 0.88397 1.00495 1.62200 1.16876 1.18005 1.28184 1.21864 0.88336 0.99551 0.95099 1.21326 0.96199 0.99862 0.94898 1.19010 0.93439 0.93719 0.95440 1.22469 0.95759 1.48778 0.98645 0.93399 1.27417 0.92105 0.94220 1.09706 1.70913 1.32018 1.43479 1.10807 0.82965 0.76326 0.77235 0.69831 1.20720 1.19388 1.19454 1.22713 0.99356 0.94145 0.86400 0.87706 1.22452 1.01407 0.95388 0.97001 1.23094 1.00350 0.93317 0.93422 1.65144 1.32599 1.02389 1.21852 1.21451 0.83886 1.04397 0.94473 1.20693 0.98311 0.93191 0.99958 1.21207 0.96209 0.97224 0.98518 1.21321 0.97036 0.99122 0.97438 1.21337 1.00602 0.93758 0.99344 1.21358 0.97496 0.97168 0.98659 1.21289 0.95633 0.99331 0.97192 1.24093 1.00192 0.95689 0.93959 0.91062 0.91894 0.92667 0.91981 0.94619 0.96129 0.92418 0.93347 0.93191 0.99871 0.99947 0.93597 0.92770 0.89488 0.93049 0.88483 0.88299 0.88808 0.85051 0.85946 0.86932 0.85449 0.84368 0.90475 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 10.00 71.98 0.72 -2.13 16 2 C 0.04 1.13 5.49 86.30 0.47 1.61 16 3 N -0.53 -15.59 4.45 -863.96 -3.84 -19.44 16 4 C 0.08 2.88 3.77 86.31 0.33 3.20 16 5 C -0.08 -3.74 5.12 30.59 0.16 -3.58 16 6 C 0.02 1.17 4.28 29.85 0.13 1.29 16 7 C -0.62 -36.61 9.11 25.60 0.23 -36.38 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C -0.04 -2.20 5.46 84.65 0.46 -1.73 16 10 N -0.93 -58.97 13.65 21.45 0.29 -58.68 16 11 Si 1.12 51.29 29.90 68.60 2.05 53.34 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 15 C 0.08 2.02 2.98 46.12 0.14 2.16 16 16 H 0.11 2.33 6.42 -2.39 -0.02 2.31 16 17 C -0.12 -2.89 6.38 31.47 0.20 -2.69 16 18 C 0.03 0.52 6.45 86.45 0.56 1.08 16 19 N -0.50 -10.29 5.54 -887.56 -4.91 -15.20 16 20 C 0.09 1.60 5.72 85.56 0.49 2.09 16 21 C -0.12 -2.81 3.76 -19.87 -0.07 -2.88 16 22 C -0.11 -2.89 7.93 22.27 0.18 -2.71 16 23 C -0.13 -3.88 10.05 22.27 0.22 -3.65 16 24 C -0.13 -4.19 10.05 22.27 0.22 -3.96 16 25 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 26 C -0.12 -2.86 8.36 22.27 0.19 -2.68 16 27 C -0.01 -0.24 4.75 86.65 0.41 0.17 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.18 6.56 -2.38 -0.02 1.17 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.91 5.94 -2.39 -0.01 1.89 16 32 H 0.04 0.92 7.36 -2.39 -0.02 0.90 16 33 H 0.02 0.79 6.47 -2.38 -0.02 0.77 16 34 H 0.06 2.21 6.17 -2.39 -0.01 2.19 16 35 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.05 2.17 6.28 -2.39 -0.02 2.16 16 37 H -0.02 -0.98 8.01 -2.38 -0.02 -1.00 16 38 H -0.02 -1.03 8.01 -2.39 -0.02 -1.05 16 39 H 0.25 16.30 7.22 -92.71 -0.67 15.63 16 40 H 0.05 1.53 6.23 -2.39 -0.01 1.51 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 1.08 4.59 -2.39 -0.01 1.07 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.10 1.53 8.03 -2.38 -0.02 1.51 16 45 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 46 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 47 H 0.12 3.43 8.06 -2.91 -0.02 3.40 16 48 H 0.11 3.69 8.06 -2.91 -0.02 3.67 16 49 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 50 H 0.14 2.79 6.72 -2.91 -0.02 2.77 16 51 H 0.08 1.80 7.94 -2.39 -0.02 1.78 16 52 H 0.06 1.64 2.56 -2.39 -0.01 1.64 16 Total: -1.00 -67.00 387.79 -0.17 -67.18 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.98 Total: 27.05 kcal Atomic # 6 Polarization: -59.50 SS G_CDS: 5.26 Total: -54.25 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -8.46 Total: -93.32 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.34 kcal Total: -67.00 -0.17 -67.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183763083.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.859 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds