Wall clock time and date at job start Tue Mar 31 2020 11:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.03916 * 2 1 4 4 C 1.53818 * 109.05172 * 241.02495 * 2 1 3 5 5 C 1.54175 * 111.97052 * 198.56529 * 4 2 1 6 6 C 1.50753 * 112.60928 * 318.48563 * 5 4 2 7 7 C 1.54435 * 109.02227 * 93.01805 * 6 5 4 8 8 N 1.39782 * 111.76858 * 282.58749 * 7 6 5 9 9 C 1.46901 * 110.99373 * 189.13155 * 8 7 6 10 10 C 1.50696 * 109.47287 * 66.04932 * 9 8 7 11 11 C 1.38288 * 119.92554 * 89.99929 * 10 9 8 12 12 C 1.38100 * 120.07490 * 179.97438 * 11 10 9 13 13 C 1.38914 * 119.92399 * 359.97438 * 12 11 10 14 14 N 1.39675 * 120.07712 * 179.97438 * 13 12 11 15 15 C 1.46507 * 119.99622 * 0.02562 * 14 13 12 16 16 C 1.46498 * 120.00353 * 179.72315 * 14 13 12 17 17 C 1.50702 * 109.47034 * 90.00055 * 16 14 13 18 18 H 1.08002 * 119.99777 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00353 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99696 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47267 * 90.00230 * 21 19 17 23 23 H 1.48509 * 109.46921 * 210.00209 * 21 19 17 24 24 H 1.48501 * 109.47211 * 329.99927 * 21 19 17 25 25 C 1.38915 * 119.85317 * 0.25647 * 13 12 11 26 26 C 1.38104 * 119.92020 * 359.48918 * 25 13 12 27 27 C 1.47631 * 114.75452 * 62.27977 * 8 7 6 28 28 H 1.08992 * 109.47445 * 178.97556 * 1 2 3 29 29 H 1.09000 * 109.47268 * 298.97714 * 1 2 3 30 30 H 1.09006 * 109.46873 * 58.97237 * 1 2 3 31 31 H 1.08998 * 108.98257 * 77.92246 * 4 2 1 32 32 H 1.09006 * 108.98277 * 319.20614 * 4 2 1 33 33 H 1.09001 * 108.85302 * 197.67937 * 5 4 2 34 34 H 1.08994 * 108.77085 * 79.23880 * 5 4 2 35 35 H 1.08995 * 109.54352 * 333.15505 * 6 5 4 36 36 H 1.08991 * 109.54255 * 212.87917 * 6 5 4 37 37 H 1.09001 * 109.01336 * 162.00043 * 7 6 5 38 38 H 1.08997 * 109.02500 * 43.17921 * 7 6 5 39 39 H 1.08998 * 109.47195 * 306.04252 * 9 8 7 40 40 H 1.09006 * 109.46568 * 186.04994 * 9 8 7 41 41 H 1.08000 * 119.96699 * 359.95344 * 11 10 9 42 42 H 1.08000 * 120.04115 * 180.02562 * 12 11 10 43 43 H 1.09001 * 109.47091 * 90.00293 * 15 14 13 44 44 H 1.09004 * 109.46622 * 209.99851 * 15 14 13 45 45 H 1.08997 * 109.47201 * 329.99553 * 15 14 13 46 46 H 1.08998 * 109.47268 * 209.99630 * 16 14 13 47 47 H 1.08996 * 109.47244 * 330.00204 * 16 14 13 48 48 H 0.96996 * 120.00019 * 180.02562 * 20 19 17 49 49 H 1.07991 * 120.04046 * 179.72622 * 25 13 12 50 50 H 1.07995 * 119.96395 * 180.25137 * 26 25 13 51 51 H 1.08997 * 109.74896 * 36.84109 * 27 8 7 52 52 H 1.09009 * 109.74155 * 157.55797 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8856 1.0304 0.0000 4 6 2.0321 -0.7043 -1.2719 5 6 3.5015 -1.1524 -1.1413 6 6 4.3653 -0.1170 -0.4672 7 6 4.4177 -0.4140 1.0474 8 7 3.2492 -0.0051 1.6965 9 6 3.3988 -0.0939 3.1552 10 6 4.4320 0.9018 3.6158 11 6 4.0474 2.1835 3.9648 12 6 4.9915 3.0983 4.3878 13 6 6.3287 2.7297 4.4629 14 7 7.2863 3.6525 4.8897 15 6 6.8808 5.0109 5.2594 16 6 8.6953 3.2602 4.9741 17 6 9.3751 3.5431 3.6592 18 1 8.8138 3.9726 2.8426 19 6 10.7138 3.2546 3.4991 20 7 11.3974 2.7321 4.4938 21 14 11.5566 3.6060 1.8696 22 1 12.1104 4.9838 1.8856 23 1 12.6583 2.6320 1.6619 24 1 10.5712 3.4814 0.7656 25 6 6.7123 1.4428 4.1069 26 6 5.7622 0.5314 3.6898 27 6 2.0208 -0.6901 1.2479 28 1 -0.3634 -1.0274 -0.0184 29 1 -0.3634 0.4979 0.8990 30 1 -0.3633 0.5297 -0.8807 31 1 1.9440 -0.0190 -2.1150 32 1 1.4102 -1.5792 -1.4618 33 1 3.8995 -1.3492 -2.1368 34 1 3.5369 -2.0735 -0.5599 35 1 3.9413 0.8738 -0.6301 36 1 5.3726 -0.1568 -0.8816 37 1 5.2682 0.1105 1.4830 38 1 4.5495 -1.4859 1.1950 39 1 3.7174 -1.1002 3.4272 40 1 2.4438 0.1263 3.6324 41 1 3.0076 2.4695 3.9063 42 1 4.6905 4.0990 4.6606 43 1 6.6418 5.0422 6.3224 44 1 7.6963 5.7032 5.0498 45 1 6.0027 5.2981 4.6810 46 1 9.1840 3.8286 5.7654 47 1 8.7632 2.1953 5.1965 48 1 12.3393 2.5295 4.3813 49 1 7.7516 1.1544 4.1599 50 1 6.0591 -0.4704 3.4168 51 1 2.2408 -1.7349 1.0287 52 1 1.2599 -0.6289 2.0261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187518336.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:36 Heat of formation + Delta-G solvation = 24.831887 kcal Electronic energy + Delta-G solvation = -26981.595402 eV Core-core repulsion = 23559.304230 eV Total energy + Delta-G solvation = -3422.291172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.88894 -38.69230 -36.14316 -34.63107 -33.26924 -32.67530 -30.44250 -30.10726 -28.01749 -27.79099 -26.48466 -25.25997 -24.41512 -23.15678 -22.04005 -21.45636 -20.61200 -19.59084 -19.10490 -16.63603 -16.43457 -16.09063 -15.64328 -15.27803 -15.20015 -14.71113 -14.33511 -14.17561 -13.88748 -13.63248 -13.46913 -13.10966 -13.05305 -12.95195 -12.82280 -12.64451 -12.17281 -11.96172 -11.79685 -11.60250 -11.50569 -11.39036 -11.23712 -11.15947 -10.96399 -10.90449 -10.67944 -10.62400 -10.44038 -10.31546 -10.26185 -10.21634 -9.86723 -9.72811 -8.80449 -8.50473 -8.23383 -8.02493 -6.44284 -6.00685 -4.17014 2.13643 2.25794 3.26270 3.33129 3.38039 4.01499 4.17916 4.41921 4.60971 4.66769 4.73438 4.86049 4.95692 5.10307 5.21838 5.23138 5.27745 5.38683 5.40601 5.50473 5.53577 5.58658 5.63432 5.67439 5.68780 5.74467 5.81200 5.83647 5.88143 5.96330 5.99923 6.04311 6.09867 6.10748 6.14771 6.25043 6.30433 6.35116 6.42735 6.45738 6.46070 6.67834 6.96800 7.06265 7.22269 7.26970 7.29545 7.36350 7.60363 7.63582 7.81631 8.16294 8.28721 8.51172 8.92394 9.49851 10.95913 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.003239 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.915655 B = 8642.776627 C = 9839.302074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.084 0.916 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.118 4.118 7 C 0.069 3.931 8 N -0.548 5.548 9 C 0.116 3.884 10 C -0.167 4.167 11 C -0.052 4.052 12 C -0.222 4.222 13 C 0.241 3.759 14 N -0.616 5.616 15 C 0.099 3.901 16 C 0.249 3.751 17 C -0.530 4.530 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.187 4.187 26 C -0.068 4.068 27 C 0.070 3.930 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.012 0.988 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.035 0.965 48 H 0.264 0.736 49 H 0.130 0.870 50 H 0.107 0.893 51 H 0.037 0.963 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.257 -6.305 -5.946 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.103 0.897 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.060 4.060 8 N -0.271 5.271 9 C -0.010 4.010 10 C -0.170 4.170 11 C -0.071 4.071 12 C -0.246 4.246 13 C 0.134 3.866 14 N -0.322 5.322 15 C -0.046 4.046 16 C 0.129 3.871 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.210 4.210 26 C -0.088 4.088 27 C -0.057 4.057 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.030 0.970 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.073 0.927 49 H 0.148 0.852 50 H 0.125 0.875 51 H 0.055 0.945 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.935 -5.772 -5.943 20.668 hybrid contribution 0.837 -0.569 -0.789 1.283 sum -18.098 -6.341 -6.732 20.324 Atomic orbital electron populations 1.21898 0.95500 1.01289 1.01638 1.21015 0.94705 1.01401 0.93913 0.89724 1.21970 0.95651 0.99765 0.97474 1.21431 0.94998 0.98957 1.00349 1.21468 0.99522 0.99928 0.94688 1.21051 0.93465 0.97143 0.94358 1.58804 1.03123 1.60091 1.05115 1.20810 0.97764 0.95995 0.86408 1.19161 0.93689 0.95562 1.08626 1.20457 0.97902 0.92324 0.96407 1.20561 0.91912 1.00135 1.11955 1.17945 0.88490 0.89496 0.90651 1.47088 1.07521 1.09318 1.68272 1.21468 1.00259 0.84673 0.98151 1.19272 0.74405 0.96491 0.96891 1.21587 0.94525 1.42020 0.98782 0.92244 1.24960 0.97246 0.94991 0.96880 1.69930 1.08997 1.43239 1.31301 0.86532 0.79176 0.78064 0.83937 1.20626 1.21094 1.19752 1.20840 1.00384 0.92780 1.06968 1.20657 0.92230 0.98188 0.97676 1.21878 0.91615 0.95450 0.96725 0.93124 0.92602 0.92903 0.92436 0.92658 0.92597 0.92682 0.90762 0.91640 0.89669 0.96992 0.95045 0.90978 0.87400 0.86977 0.94671 0.91512 0.92659 0.95256 0.94675 0.92665 0.85174 0.87529 0.94463 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.84 37.16 0.33 -0.81 16 2 C -0.09 -0.86 2.28 -91.29 -0.21 -1.07 16 3 H 0.08 0.96 7.26 -51.93 -0.38 0.58 16 4 C -0.11 -1.00 5.30 -25.69 -0.14 -1.13 16 5 C -0.12 -1.19 5.32 -27.24 -0.14 -1.33 16 6 C -0.12 -1.38 5.65 -27.10 -0.15 -1.54 16 7 C 0.07 0.90 4.74 -6.74 -0.03 0.87 16 8 N -0.55 -6.78 3.94 -241.44 -0.95 -7.74 16 9 C 0.12 1.49 5.11 -4.98 -0.03 1.46 16 10 C -0.17 -2.60 4.86 -104.59 -0.51 -3.11 16 11 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 12 C -0.22 -3.91 9.21 -39.38 -0.36 -4.27 16 13 C 0.24 4.91 6.55 -83.78 -0.55 4.36 16 14 N -0.62 -13.29 2.99 -180.99 -0.54 -13.83 16 15 C 0.10 1.75 10.19 59.85 0.61 2.36 16 16 C 0.25 6.28 4.90 -5.19 -0.03 6.25 16 17 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 21 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.19 -3.80 9.20 -39.38 -0.36 -4.16 16 26 C -0.07 -1.17 7.86 -39.61 -0.31 -1.48 16 27 C 0.07 0.72 4.89 -4.52 -0.02 0.69 16 28 H 0.05 0.36 8.12 -51.93 -0.42 -0.06 16 29 H 0.05 0.43 8.04 -51.93 -0.42 0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.45 7.96 -51.93 -0.41 0.04 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.56 6.57 -51.93 -0.34 0.22 16 35 H 0.07 0.93 7.11 -51.93 -0.37 0.56 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.30 5.31 -51.93 -0.28 1.02 16 38 H 0.01 0.16 7.54 -51.93 -0.39 -0.24 16 39 H 0.03 0.39 8.05 -51.93 -0.42 -0.02 16 40 H 0.07 0.83 7.61 -51.93 -0.39 0.43 16 41 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.11 1.79 6.14 -52.49 -0.32 1.47 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 45 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 46 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 47 H 0.04 0.93 6.22 -51.93 -0.32 0.61 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.13 2.92 6.16 -52.49 -0.32 2.60 16 50 H 0.11 1.66 7.90 -52.49 -0.41 1.25 16 51 H 0.04 0.38 6.66 -51.93 -0.35 0.04 16 52 H 0.07 0.66 7.04 -51.92 -0.37 0.29 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -28.29 391.42 -11.74 -40.03 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -9.16 Total: 1.63 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.71 Total: -17.36 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.76 Total: -46.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.29 -11.74 -40.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187518336.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.866 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds