Wall clock time and date at job start Tue Mar 31 2020 11:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.03916 * 2 1 4 4 C 1.53818 * 109.05172 * 241.02495 * 2 1 3 5 5 C 1.54175 * 111.97052 * 198.56529 * 4 2 1 6 6 C 1.50753 * 112.60928 * 318.48563 * 5 4 2 7 7 C 1.54435 * 109.02227 * 93.01805 * 6 5 4 8 8 N 1.39782 * 111.76858 * 282.58749 * 7 6 5 9 9 C 1.46901 * 110.99373 * 189.13155 * 8 7 6 10 10 C 1.50696 * 109.47287 * 66.04932 * 9 8 7 11 11 C 1.38288 * 119.92554 * 89.99929 * 10 9 8 12 12 C 1.38100 * 120.07490 * 179.97438 * 11 10 9 13 13 C 1.38914 * 119.92399 * 359.97438 * 12 11 10 14 14 N 1.39675 * 120.07712 * 179.97438 * 13 12 11 15 15 C 1.46507 * 119.99622 * 0.02562 * 14 13 12 16 16 C 1.46498 * 120.00353 * 179.72315 * 14 13 12 17 17 C 1.50702 * 109.47034 * 90.00055 * 16 14 13 18 18 H 1.08002 * 119.99777 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00353 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99696 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47267 * 90.00230 * 21 19 17 23 23 H 1.48509 * 109.46921 * 210.00209 * 21 19 17 24 24 H 1.48501 * 109.47211 * 329.99927 * 21 19 17 25 25 C 1.38915 * 119.85317 * 0.25647 * 13 12 11 26 26 C 1.38104 * 119.92020 * 359.48918 * 25 13 12 27 27 C 1.47631 * 114.75452 * 62.27977 * 8 7 6 28 28 H 1.08992 * 109.47445 * 178.97556 * 1 2 3 29 29 H 1.09000 * 109.47268 * 298.97714 * 1 2 3 30 30 H 1.09006 * 109.46873 * 58.97237 * 1 2 3 31 31 H 1.08998 * 108.98257 * 77.92246 * 4 2 1 32 32 H 1.09006 * 108.98277 * 319.20614 * 4 2 1 33 33 H 1.09001 * 108.85302 * 197.67937 * 5 4 2 34 34 H 1.08994 * 108.77085 * 79.23880 * 5 4 2 35 35 H 1.08995 * 109.54352 * 333.15505 * 6 5 4 36 36 H 1.08991 * 109.54255 * 212.87917 * 6 5 4 37 37 H 1.09001 * 109.01336 * 162.00043 * 7 6 5 38 38 H 1.08997 * 109.02500 * 43.17921 * 7 6 5 39 39 H 1.08998 * 109.47195 * 306.04252 * 9 8 7 40 40 H 1.09006 * 109.46568 * 186.04994 * 9 8 7 41 41 H 1.08000 * 119.96699 * 359.95344 * 11 10 9 42 42 H 1.08000 * 120.04115 * 180.02562 * 12 11 10 43 43 H 1.09001 * 109.47091 * 90.00293 * 15 14 13 44 44 H 1.09004 * 109.46622 * 209.99851 * 15 14 13 45 45 H 1.08997 * 109.47201 * 329.99553 * 15 14 13 46 46 H 1.08998 * 109.47268 * 209.99630 * 16 14 13 47 47 H 1.08996 * 109.47244 * 330.00204 * 16 14 13 48 48 H 0.96996 * 120.00019 * 180.02562 * 20 19 17 49 49 H 1.07991 * 120.04046 * 179.72622 * 25 13 12 50 50 H 1.07995 * 119.96395 * 180.25137 * 26 25 13 51 51 H 1.08997 * 109.74896 * 36.84109 * 27 8 7 52 52 H 1.09009 * 109.74155 * 157.55797 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8856 1.0304 0.0000 4 6 2.0321 -0.7043 -1.2719 5 6 3.5015 -1.1524 -1.1413 6 6 4.3653 -0.1170 -0.4672 7 6 4.4177 -0.4140 1.0474 8 7 3.2492 -0.0051 1.6965 9 6 3.3988 -0.0939 3.1552 10 6 4.4320 0.9018 3.6158 11 6 4.0474 2.1835 3.9648 12 6 4.9915 3.0983 4.3878 13 6 6.3287 2.7297 4.4629 14 7 7.2863 3.6525 4.8897 15 6 6.8808 5.0109 5.2594 16 6 8.6953 3.2602 4.9741 17 6 9.3751 3.5431 3.6592 18 1 8.8138 3.9726 2.8426 19 6 10.7138 3.2546 3.4991 20 7 11.3974 2.7321 4.4938 21 14 11.5566 3.6060 1.8696 22 1 12.1104 4.9838 1.8856 23 1 12.6583 2.6320 1.6619 24 1 10.5712 3.4814 0.7656 25 6 6.7123 1.4428 4.1069 26 6 5.7622 0.5314 3.6898 27 6 2.0208 -0.6901 1.2479 28 1 -0.3634 -1.0274 -0.0184 29 1 -0.3634 0.4979 0.8990 30 1 -0.3633 0.5297 -0.8807 31 1 1.9440 -0.0190 -2.1150 32 1 1.4102 -1.5792 -1.4618 33 1 3.8995 -1.3492 -2.1368 34 1 3.5369 -2.0735 -0.5599 35 1 3.9413 0.8738 -0.6301 36 1 5.3726 -0.1568 -0.8816 37 1 5.2682 0.1105 1.4830 38 1 4.5495 -1.4859 1.1950 39 1 3.7174 -1.1002 3.4272 40 1 2.4438 0.1263 3.6324 41 1 3.0076 2.4695 3.9063 42 1 4.6905 4.0990 4.6606 43 1 6.6418 5.0422 6.3224 44 1 7.6963 5.7032 5.0498 45 1 6.0027 5.2981 4.6810 46 1 9.1840 3.8286 5.7654 47 1 8.7632 2.1953 5.1965 48 1 12.3393 2.5295 4.3813 49 1 7.7516 1.1544 4.1599 50 1 6.0591 -0.4704 3.4168 51 1 2.2408 -1.7349 1.0287 52 1 1.2599 -0.6289 2.0261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187518336.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:35 Heat of formation + Delta-G solvation = 11.891390 kcal Electronic energy + Delta-G solvation = -26982.156544 eV Core-core repulsion = 23559.304230 eV Total energy + Delta-G solvation = -3422.852314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95867 -39.97747 -37.51226 -35.77156 -34.69927 -34.10209 -31.89206 -31.44435 -29.62648 -28.86788 -27.62898 -26.42146 -25.76908 -24.49013 -23.22945 -22.94940 -21.62188 -20.98734 -19.91851 -18.64206 -18.07572 -17.03406 -16.92660 -16.60292 -16.32854 -16.01366 -15.60555 -15.47824 -15.31312 -14.76209 -14.70769 -14.46145 -14.29783 -14.05221 -13.89604 -13.71069 -13.54009 -13.21523 -13.14239 -13.04669 -12.85892 -12.68081 -12.55976 -12.50567 -12.32713 -12.20475 -12.09108 -11.81290 -11.74679 -11.46901 -11.43208 -11.37496 -11.13804 -11.03201 -10.65019 -10.37824 -9.63353 -9.01621 -8.36480 -7.78827 -6.38186 0.71818 0.86098 1.35564 1.36704 1.47952 2.33571 2.64206 2.92997 3.05296 3.38452 3.84637 3.93143 4.02473 4.08175 4.11677 4.22801 4.26532 4.27584 4.41387 4.43767 4.48587 4.64443 4.65679 4.69257 4.72460 4.73494 4.80034 4.86814 4.87886 4.89738 4.94741 4.99442 5.01260 5.05955 5.14045 5.18730 5.20392 5.26038 5.29423 5.31260 5.34239 5.47674 5.51120 5.59767 5.65834 5.69621 5.70724 5.94747 6.06837 6.21155 6.33920 6.50540 6.61406 6.82717 6.94899 7.33751 8.82511 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.003239 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.915655 B = 8642.776627 C = 9839.302074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.115 4.115 7 C 0.073 3.927 8 N -0.554 5.554 9 C 0.119 3.881 10 C -0.154 4.154 11 C -0.048 4.048 12 C -0.218 4.218 13 C 0.213 3.787 14 N -0.633 5.633 15 C 0.098 3.902 16 C 0.267 3.733 17 C -0.541 4.541 18 H 0.048 0.952 19 C 0.013 3.987 20 N -0.927 5.927 21 Si 0.960 3.040 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.273 1.273 25 C -0.216 4.216 26 C -0.067 4.067 27 C 0.072 3.928 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.013 0.987 39 H 0.036 0.964 40 H 0.096 0.904 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.009 0.991 47 H 0.010 0.990 48 H 0.267 0.733 49 H 0.093 0.907 50 H 0.116 0.884 51 H 0.039 0.961 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.329 -6.549 -7.335 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.084 0.916 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.057 4.057 8 N -0.278 5.278 9 C -0.008 4.008 10 C -0.157 4.157 11 C -0.066 4.066 12 C -0.240 4.240 13 C 0.108 3.892 14 N -0.341 5.341 15 C -0.045 4.045 16 C 0.146 3.854 17 C -0.579 4.579 18 H 0.066 0.934 19 C -0.186 4.186 20 N -0.567 5.567 21 Si 0.785 3.215 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.197 1.197 25 C -0.239 4.239 26 C -0.087 4.087 27 C -0.054 4.054 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.031 0.969 39 H 0.054 0.946 40 H 0.114 0.886 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.076 0.924 49 H 0.111 0.889 50 H 0.134 0.866 51 H 0.058 0.942 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.049 -6.017 -7.335 24.003 hybrid contribution 1.687 -0.569 -0.366 1.818 sum -20.362 -6.586 -7.701 22.744 Atomic orbital electron populations 1.21852 0.93963 1.02031 1.02008 1.20963 0.95928 1.00133 0.93741 0.91628 1.21962 0.94954 1.00310 0.97409 1.21386 0.95456 0.98112 1.00444 1.21428 0.99702 1.00110 0.94081 1.20956 0.92966 0.96734 0.95009 1.58781 1.03575 1.60777 1.04687 1.20835 0.97765 0.95234 0.86920 1.19517 0.93422 0.96293 1.06440 1.20854 0.99161 0.91797 0.94837 1.20811 0.90657 1.01465 1.11095 1.18205 0.89552 0.89315 0.92132 1.46957 1.06180 1.11031 1.69916 1.21598 1.00649 0.82599 0.99607 1.18754 0.76858 0.94547 0.95290 1.21774 0.94980 1.41910 0.99270 0.93372 1.25774 0.97886 0.94677 1.00308 1.70036 1.09382 1.44035 1.33217 0.85518 0.78034 0.78382 0.79545 1.19493 1.20343 1.19741 1.20725 0.99335 0.94213 1.09612 1.20775 0.92744 0.98078 0.97073 1.21957 0.90656 0.95352 0.97459 0.92163 0.92333 0.92517 0.92212 0.91358 0.91855 0.92759 0.91694 0.92187 0.92491 0.96899 0.94629 0.88619 0.84028 0.84987 0.92915 0.92576 0.90351 0.97290 0.97229 0.92380 0.88889 0.86648 0.94247 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.84 71.98 0.64 -1.10 16 2 C -0.09 -1.44 2.28 -11.23 -0.03 -1.46 16 3 H 0.07 1.34 7.26 -2.39 -0.02 1.32 16 4 C -0.11 -1.68 5.30 31.27 0.17 -1.51 16 5 C -0.12 -2.09 5.32 30.26 0.16 -1.93 16 6 C -0.12 -2.61 5.65 30.35 0.17 -2.44 16 7 C 0.07 1.83 4.74 88.07 0.42 2.25 16 8 N -0.55 -12.49 3.94 -917.79 -3.62 -16.11 16 9 C 0.12 2.70 5.11 85.56 0.44 3.14 16 10 C -0.15 -4.53 4.86 -19.84 -0.10 -4.62 16 11 C -0.05 -1.38 9.69 22.25 0.22 -1.16 16 12 C -0.22 -7.33 9.21 22.40 0.21 -7.12 16 13 C 0.21 8.86 6.55 38.22 0.25 9.11 16 14 N -0.63 -28.30 2.99 -726.54 -2.17 -30.47 16 15 C 0.10 3.49 10.19 127.77 1.30 4.79 16 16 C 0.27 14.31 4.90 85.63 0.42 14.73 16 17 C -0.54 -30.91 9.39 25.60 0.24 -30.67 16 18 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 19 C 0.01 0.72 5.46 84.65 0.46 1.19 16 20 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 21 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 25 C -0.22 -9.27 9.20 22.40 0.21 -9.06 16 26 C -0.07 -2.36 7.86 22.25 0.17 -2.18 16 27 C 0.07 1.25 4.89 85.45 0.42 1.67 16 28 H 0.06 0.64 8.12 -2.39 -0.02 0.62 16 29 H 0.06 0.70 8.04 -2.39 -0.02 0.68 16 30 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.90 7.96 -2.38 -0.02 0.88 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 0.99 6.57 -2.39 -0.02 0.98 16 35 H 0.06 1.58 7.11 -2.39 -0.02 1.57 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.75 5.31 -2.39 -0.01 1.73 16 38 H 0.01 0.32 7.54 -2.39 -0.02 0.30 16 39 H 0.04 0.80 8.05 -2.39 -0.02 0.78 16 40 H 0.10 1.78 7.61 -2.38 -0.02 1.76 16 41 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.13 3.86 6.14 -2.91 -0.02 3.84 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 45 H 0.08 2.36 6.20 -2.39 -0.01 2.35 16 46 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 47 H 0.01 0.56 6.22 -2.39 -0.01 0.55 16 48 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 49 H 0.09 4.61 6.16 -2.92 -0.02 4.59 16 50 H 0.12 3.70 7.90 -2.91 -0.02 3.68 16 51 H 0.04 0.69 6.66 -2.39 -0.02 0.67 16 52 H 0.08 1.25 7.04 -2.38 -0.02 1.23 16 Total: -1.00 -63.48 391.42 3.15 -60.33 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.87 Total: 20.71 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 5.76 Total: -26.41 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -5.51 Total: -101.36 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -63.48 3.15 -60.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187518336.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.223 kcal (2) G-P(sol) polarization free energy of solvation -63.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds