Wall clock time and date at job start Tue Mar 31 2020 11:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 108.76073 * 2 1 4 4 C 1.50531 * 108.78938 * 118.35421 * 2 1 3 5 5 C 1.54519 * 108.86204 * 212.52480 * 4 2 1 6 6 C 1.45874 * 111.67448 * 282.75787 * 5 4 2 7 7 C 1.53990 * 112.66226 * 61.50270 * 6 5 4 8 8 N 1.44297 * 108.31135 * 278.59857 * 7 6 5 9 9 C 1.46897 * 110.99974 * 221.34969 * 8 7 6 10 10 C 1.50701 * 109.47267 * 66.04983 * 9 8 7 11 11 C 1.38286 * 119.92591 * 89.99996 * 10 9 8 12 12 C 1.38101 * 120.07469 * 180.02562 * 11 10 9 13 13 C 1.38915 * 119.92613 * 0.02562 * 12 11 10 14 14 N 1.39677 * 120.07776 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99474 * 359.97438 * 14 13 12 16 16 C 1.46500 * 120.00191 * 179.97438 * 14 13 12 17 17 C 1.50696 * 109.46944 * 89.99697 * 16 14 13 18 18 H 1.07999 * 120.00202 * 359.97438 * 17 16 14 19 19 C 1.37884 * 119.99746 * 180.02562 * 17 16 14 20 20 N 1.31514 * 119.99573 * 0.27650 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47364 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.46883 * 120.00040 * 21 19 17 24 24 H 1.48497 * 109.46870 * 239.99850 * 21 19 17 25 25 C 1.38914 * 119.84733 * 0.24794 * 13 12 11 26 26 C 1.38099 * 119.92792 * 359.49883 * 25 13 12 27 27 C 1.47950 * 113.64886 * 95.39673 * 8 7 6 28 28 H 1.09004 * 109.46651 * 301.65193 * 1 2 3 29 29 H 1.09000 * 109.46843 * 61.64486 * 1 2 3 30 30 H 1.08991 * 109.47122 * 181.64921 * 1 2 3 31 31 H 1.08999 * 109.57094 * 92.71620 * 4 2 1 32 32 H 1.09000 * 109.57125 * 332.34190 * 4 2 1 33 33 H 1.09003 * 109.04205 * 162.19302 * 5 4 2 34 34 H 1.09007 * 109.04010 * 43.32665 * 5 4 2 35 35 H 1.08990 * 108.84713 * 300.67840 * 6 5 4 36 36 H 1.09002 * 108.75988 * 182.26109 * 6 5 4 37 37 H 1.08996 * 109.69582 * 158.89540 * 7 6 5 38 38 H 1.08994 * 109.69148 * 38.30571 * 7 6 5 39 39 H 1.09006 * 109.47069 * 306.04763 * 9 8 7 40 40 H 1.09004 * 109.47226 * 186.05203 * 9 8 7 41 41 H 1.08001 * 119.96174 * 0.04133 * 11 10 9 42 42 H 1.07996 * 120.03593 * 180.02562 * 12 11 10 43 43 H 1.08994 * 109.47387 * 269.99832 * 15 14 13 44 44 H 1.09003 * 109.47206 * 30.00948 * 15 14 13 45 45 H 1.09008 * 109.46526 * 150.00328 * 15 14 13 46 46 H 1.09000 * 109.46609 * 329.99879 * 16 14 13 47 47 H 1.08999 * 109.46486 * 209.99958 * 16 14 13 48 48 H 0.97001 * 120.00651 * 359.71956 * 20 19 17 49 49 H 1.08002 * 120.03702 * 179.73085 * 25 13 12 50 50 H 1.08001 * 119.96490 * 180.25147 * 26 25 13 51 51 H 1.08991 * 108.71282 * 79.13378 * 27 8 7 52 52 H 1.09006 * 108.71073 * 197.14439 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8806 1.0321 0.0000 4 6 2.0149 -0.6768 1.2541 5 6 3.3429 -0.0210 1.6942 6 6 4.4650 -0.4789 0.8823 7 6 4.3043 -0.1222 -0.6070 8 7 3.4423 -1.1049 -1.2182 9 6 3.9405 -1.4894 -2.5455 10 6 5.2567 -2.2085 -2.3993 11 6 5.2789 -3.5828 -2.2474 12 6 6.4833 -4.2449 -2.1126 13 6 7.6735 -3.5287 -2.1291 14 7 8.8934 -4.1950 -1.9924 15 6 8.9187 -5.6509 -1.8309 16 6 10.1476 -3.4381 -2.0106 17 6 10.5043 -3.0234 -0.6064 18 1 9.8610 -3.2959 0.2171 19 6 11.6516 -2.2950 -0.3732 20 7 12.4316 -1.9576 -1.3769 21 14 12.0935 -1.7802 1.3673 22 1 11.0563 -2.2746 2.3081 23 1 13.4115 -2.3576 1.7347 24 1 12.1637 -0.2988 1.4425 25 6 7.6473 -2.1476 -2.2761 26 6 6.4397 -1.4923 -2.4157 27 6 2.0234 -0.6910 -1.2838 28 1 -0.3633 0.5393 0.8749 29 1 -0.3633 0.4881 -0.9044 30 1 -0.3633 -1.0272 0.0296 31 1 2.1785 -1.7363 1.0573 32 1 1.2713 -0.5606 2.0426 33 1 3.5341 -0.2705 2.7380 34 1 3.2537 1.0613 1.5994 35 1 4.5501 -1.5613 0.9779 36 1 5.3796 -0.0198 1.2576 37 1 5.2789 -0.1343 -1.0949 38 1 3.8578 0.8676 -0.7015 39 1 4.0803 -0.5958 -3.1540 40 1 3.2182 -2.1480 -3.0280 41 1 4.3532 -4.1390 -2.2345 42 1 6.4999 -5.3182 -1.9945 43 1 8.8720 -5.8997 -0.7708 44 1 8.0628 -6.0884 -2.3450 45 1 9.8402 -6.0477 -2.2570 46 1 10.0274 -2.5508 -2.6321 47 1 10.9427 -4.0624 -2.4182 48 1 12.2021 -2.2246 -2.2807 49 1 8.5705 -1.5873 -2.2849 50 1 6.4188 -0.4190 -2.5340 51 1 1.8978 -0.0045 -2.1209 52 1 1.4097 -1.5737 -1.4638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187518358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:38 Heat of formation + Delta-G solvation = 21.356828 kcal Electronic energy + Delta-G solvation = -27152.916521 eV Core-core repulsion = 23730.474659 eV Total energy + Delta-G solvation = -3422.441862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.73251 -38.72059 -36.23972 -34.58929 -33.60851 -32.89910 -30.51335 -30.07833 -27.90760 -27.51373 -26.46073 -25.20211 -24.38911 -23.19552 -21.91160 -21.63752 -20.40772 -19.69641 -19.38901 -17.10623 -16.59513 -16.02010 -15.81079 -15.33042 -14.99763 -14.48687 -14.24827 -13.92778 -13.80471 -13.73642 -13.44529 -13.37085 -13.06639 -12.96173 -12.87939 -12.63657 -12.27933 -12.12179 -11.88007 -11.80438 -11.48973 -11.39147 -11.29515 -11.19296 -10.94906 -10.68219 -10.64651 -10.55219 -10.48221 -10.32969 -10.29021 -10.17271 -9.97734 -9.50113 -8.58689 -8.45087 -8.28342 -8.06165 -6.60220 -6.25053 -4.18248 2.06765 2.18929 3.40556 3.43306 3.58183 3.94463 4.08868 4.47986 4.53523 4.60532 4.70973 4.87910 5.06954 5.10137 5.22976 5.27194 5.28061 5.31165 5.38579 5.44337 5.53680 5.57084 5.59955 5.61009 5.71279 5.74774 5.75878 5.82027 5.86347 5.94761 5.95913 5.99131 6.06208 6.21380 6.23762 6.24546 6.32120 6.35890 6.36228 6.38363 6.57969 6.58132 6.81098 6.87001 7.05149 7.09603 7.23077 7.24686 7.42277 7.54716 7.97571 8.04757 8.37085 8.51946 8.75076 9.52160 10.91720 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.003370 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.075613 B = 8306.337278 C = 9492.236704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.063 0.937 4 C -0.107 4.107 5 C -0.112 4.112 6 C -0.114 4.114 7 C 0.058 3.942 8 N -0.541 5.541 9 C 0.114 3.886 10 C -0.162 4.162 11 C -0.051 4.051 12 C -0.220 4.220 13 C 0.241 3.759 14 N -0.613 5.613 15 C 0.102 3.898 16 C 0.240 3.760 17 C -0.608 4.608 18 H 0.054 0.946 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 1.074 2.926 22 H -0.289 1.289 23 H -0.287 1.287 24 H -0.286 1.286 25 C -0.187 4.187 26 C -0.067 4.067 27 C 0.069 3.931 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.025 0.975 47 H 0.019 0.981 48 H 0.267 0.733 49 H 0.127 0.873 50 H 0.108 0.892 51 H 0.026 0.974 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.215 1.625 0.098 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.082 0.918 4 C -0.144 4.144 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.070 4.070 8 N -0.266 5.266 9 C -0.012 4.012 10 C -0.165 4.165 11 C -0.070 4.070 12 C -0.243 4.243 13 C 0.134 3.866 14 N -0.319 5.319 15 C -0.042 4.042 16 C 0.119 3.881 17 C -0.647 4.647 18 H 0.072 0.928 19 C -0.184 4.184 20 N -0.547 5.547 21 Si 0.902 3.098 22 H -0.215 1.215 23 H -0.213 1.213 24 H -0.212 1.212 25 C -0.209 4.209 26 C -0.087 4.087 27 C -0.058 4.058 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.042 0.958 47 H 0.036 0.964 48 H 0.078 0.922 49 H 0.145 0.855 50 H 0.126 0.874 51 H 0.044 0.956 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.849 1.940 1.297 19.986 hybrid contribution -1.038 -0.147 -1.273 1.649 sum -20.887 1.792 0.024 20.964 Atomic orbital electron populations 1.21893 0.95123 1.01860 1.01459 1.20959 0.95313 0.99645 0.95033 0.91841 1.21382 0.96310 1.01059 0.95683 1.20561 0.95432 0.99616 0.99386 1.20437 0.97578 1.02767 0.94470 1.21898 0.97405 0.92326 0.95368 1.60773 1.01066 1.42904 1.21813 1.20792 0.94164 0.97556 0.88715 1.19144 0.93248 0.93692 1.10397 1.20465 0.96301 0.93443 0.96830 1.20556 0.91471 0.99108 1.13210 1.17909 0.85755 0.91624 0.91298 1.46841 1.04412 1.05292 1.75360 1.21448 1.01005 0.81455 1.00324 1.19350 0.80003 0.91067 0.97639 1.22439 1.10559 1.38426 0.93311 0.92759 1.25821 0.92919 0.94028 1.05674 1.70766 1.39007 1.44470 1.00495 0.83471 0.75702 0.76629 0.73998 1.21476 1.21291 1.21191 1.20786 0.98455 0.92991 1.08691 1.20644 0.91774 0.98178 0.98057 1.22413 0.89056 0.98525 0.95855 0.92591 0.93017 0.92512 0.90796 0.92563 0.92564 0.93043 0.90952 0.92464 0.90232 0.94801 0.95030 0.91079 0.87300 0.86943 0.94018 0.92670 0.92226 0.95756 0.96357 0.92217 0.85498 0.87397 0.95554 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.79 37.16 0.33 -0.76 16 2 C -0.09 -0.84 2.19 -91.37 -0.20 -1.04 16 3 H 0.06 0.62 6.66 -51.93 -0.35 0.27 16 4 C -0.11 -1.06 5.13 -27.17 -0.14 -1.20 16 5 C -0.11 -1.21 5.34 -29.31 -0.16 -1.37 16 6 C -0.11 -1.47 5.37 -29.59 -0.16 -1.63 16 7 C 0.06 0.75 5.11 -4.70 -0.02 0.72 16 8 N -0.54 -6.67 3.99 -236.07 -0.94 -7.61 16 9 C 0.11 1.45 5.02 -4.98 -0.02 1.43 16 10 C -0.16 -2.50 5.03 -104.58 -0.53 -3.02 16 11 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 12 C -0.22 -3.88 9.21 -39.38 -0.36 -4.24 16 13 C 0.24 4.92 6.55 -83.78 -0.55 4.37 16 14 N -0.61 -13.32 2.99 -181.00 -0.54 -13.86 16 15 C 0.10 1.82 10.23 59.85 0.61 2.44 16 16 C 0.24 6.02 4.26 -5.20 -0.02 6.00 16 17 C -0.61 -16.92 9.39 -34.44 -0.32 -17.24 16 18 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 19 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 20 N -0.91 -26.95 13.65 55.43 0.76 -26.19 16 21 Si 1.07 25.26 29.90 -169.99 -5.08 20.18 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.19 -3.79 9.20 -39.38 -0.36 -4.16 16 26 C -0.07 -1.15 8.13 -39.61 -0.32 -1.47 16 27 C 0.07 0.70 4.74 -2.77 -0.01 0.69 16 28 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.84 7.78 -51.93 -0.40 0.43 16 32 H 0.06 0.50 7.69 -51.93 -0.40 0.10 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.53 7.59 -51.92 -0.39 0.13 16 35 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.13 4.49 -51.93 -0.23 0.90 16 38 H 0.03 0.41 6.79 -51.93 -0.35 0.05 16 39 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 40 H 0.07 0.82 7.98 -51.93 -0.41 0.41 16 41 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.80 6.14 -52.49 -0.32 1.48 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.84 6.20 -51.93 -0.32 0.51 16 45 H 0.06 1.02 7.89 -51.92 -0.41 0.61 16 46 H 0.02 0.64 6.07 -51.93 -0.32 0.32 16 47 H 0.02 0.48 7.76 -51.93 -0.40 0.08 16 48 H 0.27 7.82 7.22 -40.82 -0.29 7.53 16 49 H 0.13 2.86 6.15 -52.49 -0.32 2.54 16 50 H 0.11 1.66 7.11 -52.49 -0.37 1.28 16 51 H 0.03 0.26 8.02 -51.93 -0.42 -0.15 16 52 H 0.07 0.68 7.97 -51.93 -0.41 0.26 16 LS Contribution 391.01 15.07 5.89 5.89 Total: -1.00 -29.26 391.01 -11.78 -41.04 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -9.14 Total: 1.76 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -2.73 Total: -21.21 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.73 Total: -47.67 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.26 -11.78 -41.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187518358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.397 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds