Wall clock time and date at job start Tue Mar 31 2020 11:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 108.76073 * 2 1 4 4 C 1.50531 * 108.78938 * 118.35421 * 2 1 3 5 5 C 1.54519 * 108.86204 * 212.52480 * 4 2 1 6 6 C 1.45874 * 111.67448 * 282.75787 * 5 4 2 7 7 C 1.53990 * 112.66226 * 61.50270 * 6 5 4 8 8 N 1.44297 * 108.31135 * 278.59857 * 7 6 5 9 9 C 1.46897 * 110.99974 * 221.34969 * 8 7 6 10 10 C 1.50701 * 109.47267 * 66.04983 * 9 8 7 11 11 C 1.38286 * 119.92591 * 89.99996 * 10 9 8 12 12 C 1.38101 * 120.07469 * 180.02562 * 11 10 9 13 13 C 1.38915 * 119.92613 * 0.02562 * 12 11 10 14 14 N 1.39677 * 120.07776 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99474 * 359.97438 * 14 13 12 16 16 C 1.46500 * 120.00191 * 179.97438 * 14 13 12 17 17 C 1.50696 * 109.46944 * 89.99697 * 16 14 13 18 18 H 1.07999 * 120.00202 * 359.97438 * 17 16 14 19 19 C 1.37884 * 119.99746 * 180.02562 * 17 16 14 20 20 N 1.31514 * 119.99573 * 0.27650 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47364 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.46883 * 120.00040 * 21 19 17 24 24 H 1.48497 * 109.46870 * 239.99850 * 21 19 17 25 25 C 1.38914 * 119.84733 * 0.24794 * 13 12 11 26 26 C 1.38099 * 119.92792 * 359.49883 * 25 13 12 27 27 C 1.47950 * 113.64886 * 95.39673 * 8 7 6 28 28 H 1.09004 * 109.46651 * 301.65193 * 1 2 3 29 29 H 1.09000 * 109.46843 * 61.64486 * 1 2 3 30 30 H 1.08991 * 109.47122 * 181.64921 * 1 2 3 31 31 H 1.08999 * 109.57094 * 92.71620 * 4 2 1 32 32 H 1.09000 * 109.57125 * 332.34190 * 4 2 1 33 33 H 1.09003 * 109.04205 * 162.19302 * 5 4 2 34 34 H 1.09007 * 109.04010 * 43.32665 * 5 4 2 35 35 H 1.08990 * 108.84713 * 300.67840 * 6 5 4 36 36 H 1.09002 * 108.75988 * 182.26109 * 6 5 4 37 37 H 1.08996 * 109.69582 * 158.89540 * 7 6 5 38 38 H 1.08994 * 109.69148 * 38.30571 * 7 6 5 39 39 H 1.09006 * 109.47069 * 306.04763 * 9 8 7 40 40 H 1.09004 * 109.47226 * 186.05203 * 9 8 7 41 41 H 1.08001 * 119.96174 * 0.04133 * 11 10 9 42 42 H 1.07996 * 120.03593 * 180.02562 * 12 11 10 43 43 H 1.08994 * 109.47387 * 269.99832 * 15 14 13 44 44 H 1.09003 * 109.47206 * 30.00948 * 15 14 13 45 45 H 1.09008 * 109.46526 * 150.00328 * 15 14 13 46 46 H 1.09000 * 109.46609 * 329.99879 * 16 14 13 47 47 H 1.08999 * 109.46486 * 209.99958 * 16 14 13 48 48 H 0.97001 * 120.00651 * 359.71956 * 20 19 17 49 49 H 1.08002 * 120.03702 * 179.73085 * 25 13 12 50 50 H 1.08001 * 119.96490 * 180.25147 * 26 25 13 51 51 H 1.08991 * 108.71282 * 79.13378 * 27 8 7 52 52 H 1.09006 * 108.71073 * 197.14439 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8806 1.0321 0.0000 4 6 2.0149 -0.6768 1.2541 5 6 3.3429 -0.0210 1.6942 6 6 4.4650 -0.4789 0.8823 7 6 4.3043 -0.1222 -0.6070 8 7 3.4423 -1.1049 -1.2182 9 6 3.9405 -1.4894 -2.5455 10 6 5.2567 -2.2085 -2.3993 11 6 5.2789 -3.5828 -2.2474 12 6 6.4833 -4.2449 -2.1126 13 6 7.6735 -3.5287 -2.1291 14 7 8.8934 -4.1950 -1.9924 15 6 8.9187 -5.6509 -1.8309 16 6 10.1476 -3.4381 -2.0106 17 6 10.5043 -3.0234 -0.6064 18 1 9.8610 -3.2959 0.2171 19 6 11.6516 -2.2950 -0.3732 20 7 12.4316 -1.9576 -1.3769 21 14 12.0935 -1.7802 1.3673 22 1 11.0563 -2.2746 2.3081 23 1 13.4115 -2.3576 1.7347 24 1 12.1637 -0.2988 1.4425 25 6 7.6473 -2.1476 -2.2761 26 6 6.4397 -1.4923 -2.4157 27 6 2.0234 -0.6910 -1.2838 28 1 -0.3633 0.5393 0.8749 29 1 -0.3633 0.4881 -0.9044 30 1 -0.3633 -1.0272 0.0296 31 1 2.1785 -1.7363 1.0573 32 1 1.2713 -0.5606 2.0426 33 1 3.5341 -0.2705 2.7380 34 1 3.2537 1.0613 1.5994 35 1 4.5501 -1.5613 0.9779 36 1 5.3796 -0.0198 1.2576 37 1 5.2789 -0.1343 -1.0949 38 1 3.8578 0.8676 -0.7015 39 1 4.0803 -0.5958 -3.1540 40 1 3.2182 -2.1480 -3.0280 41 1 4.3532 -4.1390 -2.2345 42 1 6.4999 -5.3182 -1.9945 43 1 8.8720 -5.8997 -0.7708 44 1 8.0628 -6.0884 -2.3450 45 1 9.8402 -6.0477 -2.2570 46 1 10.0274 -2.5508 -2.6321 47 1 10.9427 -4.0624 -2.4182 48 1 12.2021 -2.2246 -2.2807 49 1 8.5705 -1.5873 -2.2849 50 1 6.4188 -0.4190 -2.5340 51 1 1.8978 -0.0045 -2.1209 52 1 1.4097 -1.5737 -1.4638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187518358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:37 Heat of formation + Delta-G solvation = 7.558311 kcal Electronic energy + Delta-G solvation = -27153.514869 eV Core-core repulsion = 23730.474659 eV Total energy + Delta-G solvation = -3423.040210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87707 -39.94351 -37.66210 -35.80368 -34.86289 -34.46589 -31.95131 -31.42031 -29.36117 -28.75789 -27.60985 -26.23392 -25.88526 -24.70422 -23.17386 -23.10659 -21.33885 -21.13165 -20.22509 -19.13359 -18.15081 -17.06162 -16.85451 -16.66817 -16.13479 -15.77513 -15.69435 -15.62303 -15.14294 -14.89107 -14.74084 -14.45889 -14.41860 -14.17619 -13.99928 -13.67588 -13.52566 -13.31304 -13.22412 -13.12088 -12.93318 -12.84024 -12.62609 -12.51086 -12.37198 -12.08193 -12.00883 -11.62402 -11.54750 -11.47602 -11.37127 -11.30473 -11.21753 -11.12279 -10.62950 -10.34154 -9.69698 -9.02099 -8.78941 -7.92648 -6.46257 0.64999 0.79002 1.47437 1.55803 1.73387 2.43360 2.54106 2.86343 3.07462 3.32738 3.75480 3.94575 3.98342 4.03896 4.05918 4.16976 4.22673 4.27019 4.32762 4.37572 4.45300 4.54362 4.60529 4.63538 4.65522 4.73894 4.78090 4.78965 4.81676 4.83229 4.85598 4.92499 4.95168 4.98956 5.02420 5.03606 5.20401 5.24681 5.26900 5.32859 5.42499 5.46396 5.53684 5.55266 5.60787 5.62322 5.82414 5.88203 5.98911 6.16102 6.28672 6.42270 6.43333 6.61826 6.83266 7.32697 8.64497 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.003370 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.075613 B = 8306.337278 C = 9492.236704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.060 0.940 4 C -0.102 4.102 5 C -0.112 4.112 6 C -0.109 4.109 7 C 0.061 3.939 8 N -0.548 5.548 9 C 0.117 3.883 10 C -0.148 4.148 11 C -0.047 4.047 12 C -0.216 4.216 13 C 0.211 3.789 14 N -0.630 5.630 15 C 0.101 3.899 16 C 0.254 3.746 17 C -0.614 4.614 18 H 0.038 0.962 19 C -0.027 4.027 20 N -0.932 5.932 21 Si 1.118 2.882 22 H -0.279 1.279 23 H -0.273 1.273 24 H -0.277 1.277 25 C -0.215 4.215 26 C -0.066 4.066 27 C 0.068 3.932 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.093 0.907 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.037 0.963 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.005 0.995 47 H 0.005 0.995 48 H 0.257 0.743 49 H 0.089 0.911 50 H 0.120 0.880 51 H 0.033 0.967 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.597 1.509 0.698 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.078 0.922 4 C -0.139 4.139 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.067 4.067 8 N -0.273 5.273 9 C -0.009 4.009 10 C -0.150 4.150 11 C -0.066 4.066 12 C -0.238 4.238 13 C 0.106 3.894 14 N -0.338 5.338 15 C -0.042 4.042 16 C 0.132 3.868 17 C -0.652 4.652 18 H 0.056 0.944 19 C -0.226 4.226 20 N -0.569 5.569 21 Si 0.940 3.060 22 H -0.204 1.204 23 H -0.199 1.199 24 H -0.203 1.203 25 C -0.238 4.238 26 C -0.085 4.085 27 C -0.058 4.058 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.111 0.889 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.055 0.945 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.066 0.934 49 H 0.108 0.892 50 H 0.137 0.863 51 H 0.052 0.948 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.278 1.812 1.879 23.424 hybrid contribution -0.127 -0.084 -1.499 1.507 sum -23.406 1.728 0.380 23.473 Atomic orbital electron populations 1.21848 0.93518 1.02310 1.02178 1.20942 0.96596 0.99086 0.94145 0.92186 1.21336 0.95948 1.00053 0.96575 1.20538 0.95231 1.00109 0.99042 1.20396 0.98109 1.01124 0.95150 1.21816 0.96770 0.93130 0.95025 1.60721 1.02144 1.43007 1.21428 1.20798 0.92926 0.97996 0.89225 1.19502 0.93936 0.93936 1.07652 1.20867 0.96857 0.93691 0.95186 1.20806 0.90837 1.00068 1.12133 1.18193 0.86260 0.91839 0.93063 1.46748 1.03605 1.06476 1.77010 1.21584 1.02588 0.79534 1.00488 1.18902 0.81575 0.90530 0.95816 1.22633 1.10261 1.38254 0.94078 0.94351 1.27219 0.92961 0.93736 1.08654 1.70876 1.39780 1.45758 1.00468 0.82907 0.76267 0.76873 0.69966 1.20449 1.19850 1.20251 1.20682 0.98283 0.93433 1.11430 1.20788 0.91369 0.98897 0.97484 1.22492 0.87453 0.99223 0.96655 0.91933 0.92320 0.92177 0.92168 0.91185 0.92408 0.92275 0.93187 0.93716 0.92112 0.93797 0.94409 0.88883 0.83961 0.85022 0.94473 0.89474 0.92073 0.97719 0.97737 0.93355 0.89234 0.86260 0.94833 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.79 71.98 0.63 -1.00 16 2 C -0.09 -1.38 2.19 -11.28 -0.02 -1.40 16 3 H 0.06 0.99 6.66 -2.39 -0.02 0.98 16 4 C -0.10 -1.77 5.13 30.31 0.16 -1.62 16 5 C -0.11 -2.25 5.34 28.93 0.15 -2.09 16 6 C -0.11 -2.77 5.37 28.74 0.15 -2.61 16 7 C 0.06 1.49 5.11 87.12 0.45 1.94 16 8 N -0.55 -12.15 3.99 -900.80 -3.60 -15.75 16 9 C 0.12 2.63 5.02 85.56 0.43 3.05 16 10 C -0.15 -4.28 5.03 -19.84 -0.10 -4.38 16 11 C -0.05 -1.36 9.69 22.25 0.22 -1.14 16 12 C -0.22 -7.28 9.21 22.40 0.21 -7.08 16 13 C 0.21 8.80 6.55 38.22 0.25 9.05 16 14 N -0.63 -28.34 2.99 -726.55 -2.17 -30.51 16 15 C 0.10 3.62 10.23 127.77 1.31 4.93 16 16 C 0.25 13.52 4.26 85.63 0.36 13.89 16 17 C -0.61 -35.58 9.39 25.60 0.24 -35.34 16 18 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 19 C -0.03 -1.57 5.46 84.66 0.46 -1.11 16 20 N -0.93 -56.97 13.65 21.45 0.29 -56.67 16 21 Si 1.12 51.51 29.90 68.60 2.05 53.56 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 C -0.22 -9.21 9.20 22.40 0.21 -9.00 16 26 C -0.07 -2.28 8.13 22.25 0.18 -2.10 16 27 C 0.07 1.17 4.74 86.41 0.41 1.58 16 28 H 0.06 0.66 8.07 -2.38 -0.02 0.64 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 1.23 7.78 -2.39 -0.02 1.22 16 32 H 0.07 1.04 7.69 -2.39 -0.02 1.02 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.11 7.59 -2.38 -0.02 1.09 16 35 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.71 4.49 -2.39 -0.01 1.70 16 38 H 0.04 0.98 6.79 -2.39 -0.02 0.96 16 39 H 0.04 0.82 8.06 -2.38 -0.02 0.80 16 40 H 0.09 1.74 7.98 -2.38 -0.02 1.72 16 41 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.13 3.87 6.14 -2.91 -0.02 3.85 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.09 2.51 6.20 -2.39 -0.01 2.49 16 45 H 0.06 2.12 7.89 -2.38 -0.02 2.10 16 46 H 0.00 0.28 6.07 -2.39 -0.01 0.27 16 47 H 0.00 0.26 7.76 -2.39 -0.02 0.24 16 48 H 0.26 15.81 7.22 -92.71 -0.67 15.15 16 49 H 0.09 4.43 6.15 -2.91 -0.02 4.41 16 50 H 0.12 3.73 7.11 -2.91 -0.02 3.71 16 51 H 0.03 0.55 8.02 -2.39 -0.02 0.53 16 52 H 0.08 1.22 7.97 -2.38 -0.02 1.21 16 Total: -1.00 -65.65 391.01 3.24 -62.42 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.97 Total: 21.40 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 5.69 Total: -34.45 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -5.48 Total: -102.93 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.56 kcal Total: -65.65 3.24 -62.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187518358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.976 kcal (2) G-P(sol) polarization free energy of solvation -65.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds