Wall clock time and date at job start Tue Mar 31 2020 11:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46734 * 2 1 4 4 H 1.08996 * 110.46255 * 307.93055 * 3 2 1 5 5 C 1.54379 * 110.41177 * 70.34307 * 3 2 1 6 6 H 1.09003 * 110.32407 * 23.72997 * 5 3 2 7 7 C 1.53007 * 110.40824 * 261.56999 * 5 3 2 8 8 C 1.54256 * 105.06321 * 142.62930 * 5 3 2 9 9 C 1.54376 * 105.06030 * 359.97438 * 8 5 3 10 10 N 1.48560 * 104.59643 * 336.14747 * 9 8 5 11 11 C 1.46893 * 111.00392 * 159.03980 * 10 9 8 12 12 C 1.50699 * 109.47172 * 75.41684 * 11 10 9 13 13 C 1.38291 * 119.92639 * 89.99955 * 12 11 10 14 14 C 1.38096 * 120.07446 * 180.02562 * 13 12 11 15 15 C 1.38920 * 119.92835 * 0.02562 * 14 13 12 16 16 N 1.39677 * 120.07623 * 179.97438 * 15 14 13 17 17 C 1.46495 * 119.99939 * 359.97438 * 16 15 14 18 18 C 1.46493 * 119.99829 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.46863 * 269.99894 * 18 16 15 20 20 H 1.07995 * 120.00187 * 359.97438 * 19 18 16 21 21 C 1.37879 * 120.00058 * 180.02562 * 19 18 16 22 22 N 1.31517 * 119.99948 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00185 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47158 * 60.00029 * 23 21 19 25 25 H 1.48499 * 109.47316 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47179 * 300.00087 * 23 21 19 27 27 C 1.38913 * 119.84732 * 0.25367 * 15 14 13 28 28 C 1.38104 * 119.92024 * 359.49073 * 27 15 14 29 29 H 1.08993 * 109.47652 * 293.95137 * 1 2 3 30 30 H 1.08994 * 109.46975 * 53.95726 * 1 2 3 31 31 H 1.09006 * 109.46632 * 173.95144 * 1 2 3 32 32 H 1.08992 * 109.47810 * 239.99867 * 2 1 3 33 33 H 1.09000 * 109.46991 * 119.99190 * 2 1 3 34 34 H 1.08994 * 109.46720 * 302.86217 * 7 5 3 35 35 H 1.09005 * 109.46664 * 62.85816 * 7 5 3 36 36 H 1.09003 * 109.47160 * 182.85437 * 7 5 3 37 37 H 1.09000 * 110.32885 * 241.10045 * 8 5 3 38 38 H 1.09005 * 110.32119 * 118.89074 * 8 5 3 39 39 H 1.08997 * 110.41294 * 217.36396 * 9 8 5 40 40 H 1.09003 * 110.41346 * 94.92653 * 9 8 5 41 41 H 1.08999 * 109.47162 * 315.41732 * 11 10 9 42 42 H 1.08997 * 109.47343 * 195.41421 * 11 10 9 43 43 H 1.07996 * 119.96211 * 0.04663 * 13 12 11 44 44 H 1.08000 * 120.03853 * 179.97438 * 14 13 12 45 45 H 1.08997 * 109.47430 * 90.00276 * 17 16 15 46 46 H 1.09007 * 109.47407 * 330.00205 * 17 16 15 47 47 H 1.09005 * 109.46994 * 210.00378 * 17 16 15 48 48 H 1.08999 * 109.47730 * 29.99477 * 18 16 15 49 49 H 1.08998 * 109.47549 * 149.99821 * 18 16 15 50 50 H 0.96996 * 120.00044 * 179.97438 * 22 21 19 51 51 H 1.07992 * 120.03674 * 179.72605 * 27 15 14 52 52 H 1.08003 * 119.95948 * 180.25685 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5751 2.0111 -0.8055 5 6 1.7605 2.1124 1.3625 6 1 1.6614 1.3573 2.1424 7 6 0.4933 2.9667 1.2872 8 6 2.9914 3.0024 1.6317 9 6 3.9113 2.7949 0.4095 10 7 3.5196 1.4685 -0.1331 11 6 3.9239 1.3345 -1.5389 12 6 5.4104 1.0986 -1.6139 13 6 5.9062 -0.1921 -1.5885 14 6 7.2679 -0.4119 -1.6565 15 6 8.1400 0.6655 -1.7499 16 7 9.5178 0.4468 -1.8183 17 6 10.0448 -0.9198 -1.7910 18 6 10.4359 1.5841 -1.9161 19 6 10.6712 1.9163 -3.3671 20 1 10.1858 1.3378 -4.1391 21 6 11.5071 2.9581 -3.7091 22 7 12.0987 3.6623 -2.7690 23 14 11.7993 3.3694 -5.5077 24 1 10.5077 3.7195 -6.1516 25 1 12.7309 4.5216 -5.6070 26 1 12.3921 2.1936 -6.1943 27 6 7.6389 1.9609 -1.7692 28 6 6.2757 2.1732 -1.7063 29 1 -0.3634 0.4172 0.9391 30 1 -0.3633 0.6046 -0.8309 31 1 -0.3633 -1.0220 -0.1083 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 0.6019 3.7086 0.4961 35 1 -0.3631 2.3279 1.0713 36 1 0.3385 3.4719 2.2406 37 1 3.4965 2.6842 2.5437 38 1 2.6930 4.0480 1.7083 39 1 4.9568 2.7859 0.7177 40 1 3.7396 3.5749 -0.3324 41 1 3.6734 2.2483 -2.0777 42 1 3.3992 0.4919 -1.9891 43 1 5.2277 -1.0292 -1.5158 44 1 7.6545 -1.4201 -1.6362 45 1 10.1179 -1.3015 -2.8093 46 1 9.3754 -1.5559 -1.2117 47 1 11.0333 -0.9189 -1.3314 48 1 10.0007 2.4470 -1.4119 49 1 11.3841 1.3274 -1.4438 50 1 12.6870 4.3950 -3.0096 51 1 8.3143 2.8008 -1.8373 52 1 5.8852 3.1800 -1.7254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187580760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:43 Heat of formation + Delta-G solvation = 21.677592 kcal Electronic energy + Delta-G solvation = -26660.160116 eV Core-core repulsion = 23237.732164 eV Total energy + Delta-G solvation = -3422.427953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.81183 -38.71084 -35.89814 -33.83703 -33.17645 -32.60411 -30.41843 -30.03681 -28.56492 -27.78438 -26.56336 -25.26519 -23.95170 -22.60531 -22.28384 -21.43104 -20.64586 -19.94359 -19.42261 -16.62018 -16.43704 -15.94298 -15.67209 -15.19978 -14.95159 -14.53576 -14.47388 -14.03660 -13.78883 -13.63749 -13.45192 -13.16728 -12.91706 -12.86794 -12.82326 -12.45317 -12.21688 -12.08788 -12.03658 -11.85708 -11.48069 -11.44614 -11.27156 -11.22625 -11.10144 -10.89582 -10.81699 -10.65665 -10.62607 -10.52739 -10.34800 -10.22972 -9.87995 -9.72290 -8.80786 -8.49372 -8.38664 -8.20825 -6.43186 -5.99893 -4.16239 2.15944 2.27601 3.28344 3.32531 3.36025 3.98197 4.17978 4.41138 4.42761 4.54158 4.66449 4.85220 4.99029 5.02271 5.16452 5.18873 5.22174 5.23361 5.30930 5.40717 5.43179 5.51178 5.56715 5.61334 5.63593 5.67469 5.75528 5.79243 5.81169 5.83536 5.89676 6.00933 6.03028 6.03819 6.13538 6.15214 6.17818 6.21808 6.32249 6.41869 6.46761 6.68869 6.90946 6.98131 7.07565 7.15208 7.24788 7.30483 7.39784 7.64752 7.82051 8.17229 8.29581 8.51961 8.92613 9.50322 10.96592 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.002669 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.554894 B =10486.902025 C =10991.603104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C 0.064 3.936 4 H 0.049 0.951 5 C -0.091 4.091 6 H 0.078 0.922 7 C -0.147 4.147 8 C -0.122 4.122 9 C 0.036 3.964 10 N -0.500 5.500 11 C 0.100 3.900 12 C -0.163 4.163 13 C -0.053 4.053 14 C -0.222 4.222 15 C 0.241 3.759 16 N -0.617 5.617 17 C 0.101 3.899 18 C 0.250 3.750 19 C -0.530 4.530 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.277 1.277 27 C -0.187 4.187 28 C -0.066 4.066 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.040 0.960 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.035 0.965 49 H 0.030 0.970 50 H 0.264 0.736 51 H 0.130 0.870 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.180 -4.784 7.550 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.044 4.044 4 H 0.067 0.933 5 C -0.110 4.110 6 H 0.096 0.904 7 C -0.204 4.204 8 C -0.160 4.160 9 C -0.092 4.092 10 N -0.223 5.223 11 C -0.027 4.027 12 C -0.166 4.166 13 C -0.072 4.072 14 C -0.245 4.245 15 C 0.134 3.866 16 N -0.323 5.323 17 C -0.043 4.043 18 C 0.130 3.870 19 C -0.569 4.569 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.724 3.276 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.210 4.210 28 C -0.085 4.085 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.091 0.909 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.053 0.947 49 H 0.047 0.953 50 H 0.074 0.926 51 H 0.148 0.852 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.522 -5.099 7.844 22.554 hybrid contribution 0.072 0.987 -1.608 1.888 sum -20.451 -4.112 6.237 21.772 Atomic orbital electron populations 1.21836 0.96016 1.01446 1.01695 1.21434 0.94837 0.95632 1.02694 1.22776 0.89066 0.96170 0.96428 0.93296 1.21910 0.94592 0.97394 0.97062 0.90401 1.21962 0.97275 0.99596 1.01593 1.22408 0.95637 0.99294 0.98703 1.23086 1.00485 0.89868 0.95752 1.65412 1.09100 1.29872 1.17943 1.20978 0.93467 1.00104 0.88169 1.19081 0.93465 0.93390 1.10633 1.20451 0.94045 0.95617 0.97107 1.20554 0.93121 0.97363 1.13498 1.17928 0.84075 0.93348 0.91219 1.47070 1.02710 1.06670 1.75822 1.21450 0.98591 0.84024 1.00270 1.19280 0.87684 0.83294 0.96754 1.21543 1.27526 1.15333 0.92526 0.92357 1.24962 0.95555 0.95897 0.97681 1.69920 1.30538 1.20622 1.32411 0.86583 0.78158 0.77860 0.85010 1.20111 1.21192 1.20248 1.20833 0.95217 0.96160 1.08785 1.20627 0.92721 0.97330 0.97869 0.92497 0.92987 0.92799 0.91953 0.91275 0.92866 0.92303 0.92644 0.91179 0.91528 0.89746 0.94160 0.94681 0.90940 0.87480 0.86980 0.94163 0.92815 0.92111 0.94685 0.95251 0.92609 0.85217 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.11 37.16 0.34 -0.77 16 2 C -0.11 -0.98 5.59 -26.73 -0.15 -1.13 16 3 C 0.06 0.64 1.84 -66.05 -0.12 0.52 16 4 H 0.05 0.50 7.71 -51.93 -0.40 0.10 16 5 C -0.09 -0.81 2.77 -89.24 -0.25 -1.06 16 6 H 0.08 0.70 7.73 -51.93 -0.40 0.30 16 7 C -0.15 -1.08 8.77 37.16 0.33 -0.75 16 8 C -0.12 -1.20 6.65 -25.35 -0.17 -1.37 16 9 C 0.04 0.43 5.74 -2.18 -0.01 0.42 16 10 N -0.50 -6.14 5.00 -223.55 -1.12 -7.26 16 11 C 0.10 1.31 4.93 -4.98 -0.02 1.29 16 12 C -0.16 -2.59 5.21 -104.59 -0.54 -3.14 16 13 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 14 C -0.22 -3.97 9.21 -39.38 -0.36 -4.34 16 15 C 0.24 4.98 6.55 -83.78 -0.55 4.43 16 16 N -0.62 -13.44 2.99 -181.00 -0.54 -13.98 16 17 C 0.10 1.81 10.23 59.84 0.61 2.42 16 18 C 0.25 6.34 4.96 -5.20 -0.03 6.31 16 19 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 23 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C -0.19 -3.86 9.21 -39.38 -0.36 -4.22 16 28 C -0.07 -1.16 8.95 -39.61 -0.35 -1.51 16 29 H 0.06 0.38 6.35 -51.93 -0.33 0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.60 7.18 -51.93 -0.37 0.23 16 33 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 34 H 0.05 0.41 8.13 -51.93 -0.42 -0.02 16 35 H 0.06 0.39 6.05 -51.93 -0.31 0.08 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.58 7.71 -51.93 -0.40 0.18 16 39 H 0.08 1.14 7.90 -51.93 -0.41 0.73 16 40 H 0.04 0.47 7.74 -51.93 -0.40 0.07 16 41 H 0.03 0.45 7.69 -51.93 -0.40 0.05 16 42 H 0.07 0.89 7.02 -51.93 -0.36 0.52 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.11 1.82 6.14 -52.49 -0.32 1.49 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.82 6.20 -51.93 -0.32 0.50 16 47 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 48 H 0.04 0.94 6.19 -51.93 -0.32 0.62 16 49 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 50 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.13 2.94 6.14 -52.49 -0.32 2.62 16 52 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -28.80 398.95 -11.62 -40.42 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -9.24 Total: 0.95 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.45 Total: -17.49 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.92 Total: -46.35 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.80 -11.62 -40.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187580760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.100 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds