Wall clock time and date at job start Tue Mar 31 2020 11:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46734 * 2 1 4 4 H 1.08996 * 110.46255 * 307.93055 * 3 2 1 5 5 C 1.54379 * 110.41177 * 70.34307 * 3 2 1 6 6 H 1.09003 * 110.32407 * 23.72997 * 5 3 2 7 7 C 1.53007 * 110.40824 * 261.56999 * 5 3 2 8 8 C 1.54256 * 105.06321 * 142.62930 * 5 3 2 9 9 C 1.54376 * 105.06030 * 359.97438 * 8 5 3 10 10 N 1.48560 * 104.59643 * 336.14747 * 9 8 5 11 11 C 1.46893 * 111.00392 * 159.03980 * 10 9 8 12 12 C 1.50699 * 109.47172 * 75.41684 * 11 10 9 13 13 C 1.38291 * 119.92639 * 89.99955 * 12 11 10 14 14 C 1.38096 * 120.07446 * 180.02562 * 13 12 11 15 15 C 1.38920 * 119.92835 * 0.02562 * 14 13 12 16 16 N 1.39677 * 120.07623 * 179.97438 * 15 14 13 17 17 C 1.46495 * 119.99939 * 359.97438 * 16 15 14 18 18 C 1.46493 * 119.99829 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.46863 * 269.99894 * 18 16 15 20 20 H 1.07995 * 120.00187 * 359.97438 * 19 18 16 21 21 C 1.37879 * 120.00058 * 180.02562 * 19 18 16 22 22 N 1.31517 * 119.99948 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00185 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47158 * 60.00029 * 23 21 19 25 25 H 1.48499 * 109.47316 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47179 * 300.00087 * 23 21 19 27 27 C 1.38913 * 119.84732 * 0.25367 * 15 14 13 28 28 C 1.38104 * 119.92024 * 359.49073 * 27 15 14 29 29 H 1.08993 * 109.47652 * 293.95137 * 1 2 3 30 30 H 1.08994 * 109.46975 * 53.95726 * 1 2 3 31 31 H 1.09006 * 109.46632 * 173.95144 * 1 2 3 32 32 H 1.08992 * 109.47810 * 239.99867 * 2 1 3 33 33 H 1.09000 * 109.46991 * 119.99190 * 2 1 3 34 34 H 1.08994 * 109.46720 * 302.86217 * 7 5 3 35 35 H 1.09005 * 109.46664 * 62.85816 * 7 5 3 36 36 H 1.09003 * 109.47160 * 182.85437 * 7 5 3 37 37 H 1.09000 * 110.32885 * 241.10045 * 8 5 3 38 38 H 1.09005 * 110.32119 * 118.89074 * 8 5 3 39 39 H 1.08997 * 110.41294 * 217.36396 * 9 8 5 40 40 H 1.09003 * 110.41346 * 94.92653 * 9 8 5 41 41 H 1.08999 * 109.47162 * 315.41732 * 11 10 9 42 42 H 1.08997 * 109.47343 * 195.41421 * 11 10 9 43 43 H 1.07996 * 119.96211 * 0.04663 * 13 12 11 44 44 H 1.08000 * 120.03853 * 179.97438 * 14 13 12 45 45 H 1.08997 * 109.47430 * 90.00276 * 17 16 15 46 46 H 1.09007 * 109.47407 * 330.00205 * 17 16 15 47 47 H 1.09005 * 109.46994 * 210.00378 * 17 16 15 48 48 H 1.08999 * 109.47730 * 29.99477 * 18 16 15 49 49 H 1.08998 * 109.47549 * 149.99821 * 18 16 15 50 50 H 0.96996 * 120.00044 * 179.97438 * 22 21 19 51 51 H 1.07992 * 120.03674 * 179.72605 * 27 15 14 52 52 H 1.08003 * 119.95948 * 180.25685 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5751 2.0111 -0.8055 5 6 1.7605 2.1124 1.3625 6 1 1.6614 1.3573 2.1424 7 6 0.4933 2.9667 1.2872 8 6 2.9914 3.0024 1.6317 9 6 3.9113 2.7949 0.4095 10 7 3.5196 1.4685 -0.1331 11 6 3.9239 1.3345 -1.5389 12 6 5.4104 1.0986 -1.6139 13 6 5.9062 -0.1921 -1.5885 14 6 7.2679 -0.4119 -1.6565 15 6 8.1400 0.6655 -1.7499 16 7 9.5178 0.4468 -1.8183 17 6 10.0448 -0.9198 -1.7910 18 6 10.4359 1.5841 -1.9161 19 6 10.6712 1.9163 -3.3671 20 1 10.1858 1.3378 -4.1391 21 6 11.5071 2.9581 -3.7091 22 7 12.0987 3.6623 -2.7690 23 14 11.7993 3.3694 -5.5077 24 1 10.5077 3.7195 -6.1516 25 1 12.7309 4.5216 -5.6070 26 1 12.3921 2.1936 -6.1943 27 6 7.6389 1.9609 -1.7692 28 6 6.2757 2.1732 -1.7063 29 1 -0.3634 0.4172 0.9391 30 1 -0.3633 0.6046 -0.8309 31 1 -0.3633 -1.0220 -0.1083 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 0.6019 3.7086 0.4961 35 1 -0.3631 2.3279 1.0713 36 1 0.3385 3.4719 2.2406 37 1 3.4965 2.6842 2.5437 38 1 2.6930 4.0480 1.7083 39 1 4.9568 2.7859 0.7177 40 1 3.7396 3.5749 -0.3324 41 1 3.6734 2.2483 -2.0777 42 1 3.3992 0.4919 -1.9891 43 1 5.2277 -1.0292 -1.5158 44 1 7.6545 -1.4201 -1.6362 45 1 10.1179 -1.3015 -2.8093 46 1 9.3754 -1.5559 -1.2117 47 1 11.0333 -0.9189 -1.3314 48 1 10.0007 2.4470 -1.4119 49 1 11.3841 1.3274 -1.4438 50 1 12.6870 4.3950 -3.0096 51 1 8.3143 2.8008 -1.8373 52 1 5.8852 3.1800 -1.7254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187580760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:42 Heat of formation + Delta-G solvation = 7.818781 kcal Electronic energy + Delta-G solvation = -26660.761079 eV Core-core repulsion = 23237.732164 eV Total energy + Delta-G solvation = -3423.028916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.84066 -40.01541 -37.40354 -35.04743 -34.47484 -33.89294 -31.89466 -31.26182 -29.64710 -29.43397 -27.59323 -26.54995 -25.42817 -23.93888 -23.15452 -22.94057 -21.66395 -20.97341 -20.57038 -18.65401 -18.08041 -16.91237 -16.75619 -16.60186 -16.20306 -16.04844 -15.33362 -15.30201 -15.19382 -15.00833 -14.56566 -14.38448 -14.22008 -13.98619 -13.85342 -13.57914 -13.40240 -13.17473 -13.13064 -13.03154 -12.91393 -12.72417 -12.69197 -12.52873 -12.44302 -12.28628 -12.06261 -11.82394 -11.77341 -11.66241 -11.58500 -11.40512 -11.31449 -11.04435 -10.64834 -10.39507 -9.66393 -9.34678 -8.36595 -7.80041 -6.38256 0.70963 0.84987 1.35958 1.37896 1.46273 2.33441 2.63362 2.93591 3.05134 3.34110 3.68014 3.75888 4.01421 4.08135 4.15226 4.24299 4.26364 4.35308 4.39023 4.44451 4.48482 4.54405 4.58806 4.63211 4.69667 4.71823 4.73525 4.83235 4.87427 4.88236 4.92685 4.96454 5.00375 5.08105 5.11843 5.14250 5.17458 5.22935 5.24563 5.31652 5.33255 5.39425 5.48320 5.56538 5.58824 5.68191 5.69565 5.88839 6.06673 6.09097 6.16150 6.24674 6.49641 6.81985 6.93568 7.33450 8.82406 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.002669 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.554894 B =10486.902025 C =10991.603104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C 0.065 3.935 4 H 0.051 0.949 5 C -0.086 4.086 6 H 0.079 0.921 7 C -0.143 4.143 8 C -0.120 4.120 9 C 0.034 3.966 10 N -0.511 5.511 11 C 0.104 3.896 12 C -0.150 4.150 13 C -0.050 4.050 14 C -0.217 4.217 15 C 0.213 3.787 16 N -0.633 5.633 17 C 0.100 3.900 18 C 0.267 3.733 19 C -0.542 4.542 20 H 0.048 0.952 21 C 0.012 3.988 22 N -0.927 5.927 23 Si 0.962 3.038 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.215 4.215 28 C -0.067 4.067 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.089 0.911 43 H 0.140 0.860 44 H 0.133 0.867 45 H 0.039 0.961 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.010 0.990 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.094 0.906 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.027 -6.014 7.155 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.043 4.043 4 H 0.069 0.931 5 C -0.105 4.105 6 H 0.097 0.903 7 C -0.200 4.200 8 C -0.158 4.158 9 C -0.095 4.095 10 N -0.234 5.234 11 C -0.023 4.023 12 C -0.153 4.153 13 C -0.069 4.069 14 C -0.239 4.239 15 C 0.108 3.892 16 N -0.341 5.341 17 C -0.043 4.043 18 C 0.145 3.855 19 C -0.580 4.580 20 H 0.066 0.934 21 C -0.187 4.187 22 N -0.567 5.567 23 Si 0.786 3.214 24 H -0.198 1.198 25 H -0.203 1.203 26 H -0.194 1.194 27 C -0.238 4.238 28 C -0.086 4.086 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.107 0.893 43 H 0.157 0.843 44 H 0.151 0.849 45 H 0.058 0.942 46 H 0.102 0.898 47 H 0.080 0.920 48 H 0.028 0.972 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.112 0.888 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.406 -6.352 7.459 25.374 hybrid contribution 0.837 1.363 -1.415 2.136 sum -22.569 -4.989 6.044 23.891 Atomic orbital electron populations 1.21798 0.94503 1.02060 1.02186 1.21416 0.96116 0.94658 1.02141 1.22849 0.87323 0.97060 0.97037 0.93142 1.21900 0.94850 0.97369 0.96426 0.90270 1.21928 0.96628 0.99442 1.02001 1.22404 0.95633 1.00288 0.97465 1.23058 0.99726 0.89930 0.96737 1.65364 1.10971 1.29995 1.17102 1.20943 0.91331 1.00964 0.89082 1.19438 0.95008 0.92859 1.07997 1.20837 0.93807 0.96660 0.95585 1.20801 0.93464 0.97372 1.12306 1.18189 0.83918 0.94161 0.92917 1.46946 1.02886 1.06869 1.77370 1.21587 0.99365 0.82541 1.00800 1.18780 0.87357 0.84072 0.95275 1.21740 1.27517 1.15499 0.93291 0.93383 1.25792 0.95216 0.95660 1.02063 1.70030 1.31080 1.21081 1.34472 0.85556 0.78133 0.77985 0.79705 1.19846 1.20293 1.19351 1.20728 0.96150 0.95521 1.11394 1.20752 0.91685 0.98694 0.97467 0.91854 0.92677 0.92136 0.92382 0.91927 0.93106 0.91309 0.91853 0.91518 0.90415 0.92050 0.94184 0.94420 0.89309 0.84263 0.84947 0.94208 0.89821 0.92035 0.97241 0.97220 0.92361 0.88799 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.11 71.98 0.66 -1.04 16 2 C -0.11 -1.63 5.59 30.60 0.17 -1.46 16 3 C 0.07 1.14 1.84 45.06 0.08 1.23 16 4 H 0.05 0.90 7.71 -2.39 -0.02 0.88 16 5 C -0.09 -1.34 2.77 -9.90 -0.03 -1.37 16 6 H 0.08 1.24 7.73 -2.39 -0.02 1.22 16 7 C -0.14 -1.70 8.77 71.98 0.63 -1.07 16 8 C -0.12 -2.18 6.65 31.49 0.21 -1.97 16 9 C 0.03 0.77 5.74 86.45 0.50 1.27 16 10 N -0.51 -11.62 5.00 -861.19 -4.31 -15.93 16 11 C 0.10 2.50 4.93 85.56 0.42 2.93 16 12 C -0.15 -4.57 5.21 -19.84 -0.10 -4.67 16 13 C -0.05 -1.50 9.69 22.25 0.22 -1.28 16 14 C -0.22 -7.45 9.21 22.40 0.21 -7.24 16 15 C 0.21 8.97 6.55 38.22 0.25 9.22 16 16 N -0.63 -28.52 2.99 -726.57 -2.17 -30.69 16 17 C 0.10 3.58 10.23 127.77 1.31 4.89 16 18 C 0.27 14.35 4.96 85.63 0.42 14.78 16 19 C -0.54 -31.06 9.39 25.60 0.24 -30.82 16 20 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 21 C 0.01 0.68 5.46 84.65 0.46 1.14 16 22 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 23 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 C -0.22 -9.32 9.21 22.40 0.21 -9.11 16 28 C -0.07 -2.37 8.95 22.25 0.20 -2.17 16 29 H 0.06 0.65 6.35 -2.39 -0.02 0.64 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.06 0.95 7.18 -2.39 -0.02 0.93 16 33 H 0.06 1.06 7.95 -2.39 -0.02 1.04 16 34 H 0.05 0.64 8.13 -2.39 -0.02 0.62 16 35 H 0.07 0.70 6.05 -2.38 -0.01 0.68 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.23 7.71 -2.38 -0.02 1.21 16 39 H 0.06 1.68 7.90 -2.39 -0.02 1.66 16 40 H 0.04 0.91 7.74 -2.39 -0.02 0.89 16 41 H 0.04 0.90 7.69 -2.39 -0.02 0.88 16 42 H 0.09 1.87 7.02 -2.39 -0.02 1.86 16 43 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 44 H 0.13 3.95 6.14 -2.91 -0.02 3.93 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 2.44 6.20 -2.38 -0.01 2.42 16 47 H 0.06 2.14 7.89 -2.38 -0.02 2.12 16 48 H 0.01 0.56 6.19 -2.39 -0.01 0.54 16 49 H 0.01 0.55 7.89 -2.39 -0.02 0.53 16 50 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 51 H 0.09 4.67 6.14 -2.91 -0.02 4.66 16 52 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -64.00 398.95 2.75 -61.25 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.87 Total: 20.32 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 6.05 Total: -26.77 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -6.20 Total: -101.50 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -64.00 2.75 -61.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187580760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.070 kcal (2) G-P(sol) polarization free energy of solvation -63.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds