Wall clock time and date at job start Tue Mar 31 2020 11:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47325 * 2 1 4 4 H 1.08997 * 110.07361 * 56.16229 * 3 2 1 5 5 C 1.53996 * 109.91967 * 177.37016 * 3 2 1 6 6 H 1.09004 * 110.30986 * 239.49215 * 5 3 2 7 7 C 1.53005 * 110.30611 * 1.65476 * 5 3 2 8 8 C 1.54596 * 105.14198 * 120.57420 * 5 3 2 9 9 C 1.54929 * 102.92151 * 21.95616 * 8 5 3 10 10 N 1.47909 * 109.91383 * 294.95450 * 3 2 1 11 11 C 1.46901 * 110.99618 * 94.80516 * 10 3 2 12 12 C 1.50702 * 109.46801 * 175.94040 * 11 10 3 13 13 C 1.38288 * 119.92190 * 89.99945 * 12 11 10 14 14 C 1.38107 * 120.07458 * 179.97438 * 13 12 11 15 15 C 1.38913 * 119.92312 * 0.02562 * 14 13 12 16 16 N 1.39674 * 120.07336 * 179.97438 * 15 14 13 17 17 C 1.46498 * 120.00338 * 0.02562 * 16 15 14 18 18 C 1.46498 * 119.99852 * 179.97438 * 16 15 14 19 19 C 1.50702 * 109.47344 * 270.00392 * 18 16 15 20 20 H 1.08001 * 119.99943 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99641 * 180.02562 * 19 18 16 22 22 N 1.31508 * 120.00504 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99568 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47208 * 89.99876 * 23 21 19 25 25 H 1.48502 * 109.46933 * 210.00176 * 23 21 19 26 26 H 1.48499 * 109.47075 * 329.99568 * 23 21 19 27 27 C 1.38908 * 119.85133 * 0.25616 * 15 14 13 28 28 C 1.38107 * 119.92435 * 359.48755 * 27 15 14 29 29 H 1.08999 * 109.47065 * 309.62379 * 1 2 3 30 30 H 1.08998 * 109.47291 * 69.62206 * 1 2 3 31 31 H 1.08997 * 109.47281 * 189.62073 * 1 2 3 32 32 H 1.09004 * 109.47265 * 239.99194 * 2 1 3 33 33 H 1.09009 * 109.47310 * 119.99452 * 2 1 3 34 34 H 1.09000 * 109.46768 * 60.00709 * 7 5 3 35 35 H 1.08998 * 109.47059 * 180.02562 * 7 5 3 36 36 H 1.08998 * 109.47337 * 300.00076 * 7 5 3 37 37 H 1.09002 * 110.72458 * 140.31714 * 8 5 3 38 38 H 1.09006 * 110.72018 * 263.60034 * 8 5 3 39 39 H 1.09008 * 110.66766 * 204.14862 * 9 8 5 40 40 H 1.08999 * 110.67009 * 81.02216 * 9 8 5 41 41 H 1.08999 * 109.47230 * 55.94462 * 11 10 3 42 42 H 1.08993 * 109.46853 * 295.93774 * 11 10 3 43 43 H 1.07998 * 119.96392 * 359.95582 * 13 12 11 44 44 H 1.07995 * 120.04089 * 180.02562 * 14 13 12 45 45 H 1.09002 * 109.46950 * 89.99048 * 17 16 15 46 46 H 1.09003 * 109.46694 * 330.00226 * 17 16 15 47 47 H 1.08995 * 109.47220 * 209.99707 * 17 16 15 48 48 H 1.09005 * 109.47514 * 30.00580 * 18 16 15 49 49 H 1.08999 * 109.47140 * 150.00506 * 18 16 15 50 50 H 0.97005 * 120.00084 * 180.02562 * 22 21 19 51 51 H 1.07999 * 120.03834 * 179.72362 * 27 15 14 52 52 H 1.08000 * 119.96369 * 180.25640 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6272 1.9852 0.8503 5 6 3.5785 1.4549 0.0664 6 1 3.9145 1.9904 0.9545 7 6 4.1214 0.0245 0.0704 8 6 4.0318 2.1975 -1.2115 9 6 2.7790 3.0246 -1.5944 10 7 1.6548 2.1130 -1.2608 11 6 0.4011 2.8610 -1.0974 12 6 0.0935 3.6095 -2.3687 13 6 -0.6636 3.0081 -3.3574 14 6 -0.9478 3.6913 -4.5235 15 6 -0.4718 4.9840 -4.7028 16 7 -0.7569 5.6777 -5.8811 17 6 -1.5592 5.0424 -6.9293 18 6 -0.2545 7.0410 -6.0682 19 6 -1.2661 8.0260 -5.5413 20 1 -2.1906 7.6718 -5.1097 21 6 -1.0113 9.3792 -5.6102 22 7 0.1142 9.8106 -6.1361 23 14 -2.2650 10.6001 -4.9563 24 1 -1.9890 10.8732 -3.5229 25 1 -2.1728 11.8655 -5.7280 26 1 -3.6297 10.0321 -5.0982 27 6 0.2933 5.5830 -3.7101 28 6 0.5694 4.8960 -2.5443 29 1 -0.3633 0.6554 0.7915 30 1 -0.3634 0.3578 -0.9633 31 1 -0.3634 -1.0132 0.1717 32 1 1.8933 -0.5140 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.8088 -0.4852 -0.8410 35 1 5.2101 0.0492 0.1180 36 1 3.7322 -0.5095 0.9372 37 1 4.8762 2.8529 -0.9977 38 1 4.2823 1.4888 -2.0010 39 1 2.7825 3.2575 -2.6593 40 1 2.7238 3.9368 -1.0004 41 1 0.5049 3.5689 -0.2751 42 1 -0.4103 2.1668 -0.8792 43 1 -1.0327 2.0028 -3.2176 44 1 -1.5394 3.2213 -5.2950 45 1 -2.6141 5.2596 -6.7614 46 1 -1.4019 3.9641 -6.9039 47 1 -1.2587 5.4306 -7.9024 48 1 0.6843 7.1599 -5.5272 49 1 -0.0878 7.2243 -7.1297 50 1 0.2936 10.7627 -6.1842 51 1 0.6687 6.5861 -3.8483 52 1 1.1607 5.3626 -1.7703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187580791.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:50 Heat of formation + Delta-G solvation = 28.259662 kcal Electronic energy + Delta-G solvation = -26939.389223 eV Core-core repulsion = 23517.246691 eV Total energy + Delta-G solvation = -3422.142533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.95159 -38.72418 -35.92149 -33.68107 -33.26981 -32.61725 -30.43701 -29.97150 -28.49695 -27.79368 -26.46733 -25.08605 -24.15559 -23.12479 -22.03451 -21.47748 -20.81524 -19.56389 -19.05307 -16.72449 -16.50118 -16.20868 -15.51874 -15.28788 -14.96311 -14.54042 -14.20037 -13.94812 -13.89112 -13.61665 -13.52641 -13.33032 -13.01754 -12.88009 -12.67965 -12.40888 -12.12252 -11.98540 -11.85351 -11.74177 -11.48354 -11.45926 -11.26760 -11.24368 -11.01520 -10.82645 -10.82072 -10.67121 -10.51803 -10.45792 -10.31180 -10.23839 -9.87751 -9.72777 -8.82598 -8.50723 -8.29928 -8.22609 -6.44913 -6.01305 -4.17437 2.13441 2.25273 3.26133 3.32540 3.36426 4.04344 4.16533 4.41045 4.44978 4.57160 4.62763 4.78287 5.05005 5.11747 5.19695 5.21166 5.26126 5.34617 5.35665 5.39043 5.50063 5.56777 5.59308 5.61958 5.67642 5.76760 5.78781 5.82097 5.83876 5.90756 5.98423 6.02009 6.05241 6.09265 6.13923 6.16295 6.24807 6.30808 6.31320 6.41404 6.45582 6.67041 6.93502 6.98701 7.09211 7.17562 7.23439 7.29073 7.37850 7.62463 7.80975 8.15902 8.27724 8.50067 8.91668 9.49309 10.95374 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.002804 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.224723 B = 9984.750867 C =10364.659302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C 0.067 3.933 4 H 0.047 0.953 5 C -0.100 4.100 6 H 0.070 0.930 7 C -0.142 4.142 8 C -0.121 4.121 9 C 0.040 3.960 10 N -0.503 5.503 11 C 0.097 3.903 12 C -0.168 4.168 13 C -0.052 4.052 14 C -0.223 4.223 15 C 0.242 3.758 16 N -0.616 5.616 17 C 0.101 3.899 18 C 0.249 3.751 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.188 4.188 28 C -0.066 4.066 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.031 0.969 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.040 0.960 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.035 0.965 49 H 0.030 0.970 50 H 0.264 0.736 51 H 0.130 0.870 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 -18.546 10.935 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.042 4.042 4 H 0.065 0.935 5 C -0.119 4.119 6 H 0.088 0.912 7 C -0.199 4.199 8 C -0.159 4.159 9 C -0.088 4.088 10 N -0.227 5.227 11 C -0.030 4.030 12 C -0.171 4.171 13 C -0.071 4.071 14 C -0.246 4.246 15 C 0.135 3.865 16 N -0.322 5.322 17 C -0.044 4.044 18 C 0.130 3.870 19 C -0.569 4.569 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.723 3.277 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.210 4.210 28 C -0.086 4.086 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.073 0.927 51 H 0.148 0.852 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.993 -18.619 10.254 21.834 hybrid contribution -0.666 1.617 0.948 1.989 sum 4.327 -17.002 11.203 20.816 Atomic orbital electron populations 1.21899 0.96308 1.00847 1.02173 1.21606 0.95583 0.95492 1.01706 1.22485 0.94194 0.95796 0.91722 0.93450 1.22010 0.94599 0.96922 0.98367 0.91187 1.21921 1.00102 0.95756 1.02130 1.22597 0.97375 0.98812 0.97091 1.23175 0.89648 0.94043 1.01906 1.64807 1.02216 1.26823 1.28840 1.21158 0.92397 0.95148 0.94337 1.19130 1.05582 0.95232 0.97159 1.20464 0.96351 0.97850 0.92479 1.20562 1.09090 0.95070 0.99847 1.17930 0.91546 0.90355 0.86684 1.47081 1.54622 1.16080 1.14431 1.21453 0.95117 0.96654 0.91130 1.19289 0.94849 0.75693 0.97211 1.21580 1.04409 0.90897 1.40011 0.92301 1.24960 0.95590 0.98336 0.95204 1.69928 1.23782 1.14944 1.44812 0.86528 0.81682 0.80444 0.78998 1.20510 1.21134 1.19899 1.20834 1.04388 1.01605 0.94181 1.20657 0.97902 0.93679 0.96354 0.93393 0.91622 0.93347 0.91005 0.92067 0.91902 0.93166 0.92530 0.91458 0.90779 0.89627 0.93978 0.95067 0.90107 0.87402 0.86959 0.94142 0.92800 0.92092 0.94688 0.95229 0.92659 0.85212 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 8.53 37.16 0.32 -1.09 16 2 C -0.11 -0.95 4.44 -26.74 -0.12 -1.07 16 3 C 0.07 0.67 2.61 -66.64 -0.17 0.50 16 4 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 5 C -0.10 -0.90 3.59 -89.26 -0.32 -1.22 16 6 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 7 C -0.14 -1.08 7.92 37.16 0.29 -0.79 16 8 C -0.12 -1.21 6.61 -24.87 -0.16 -1.37 16 9 C 0.04 0.49 5.07 -1.90 -0.01 0.48 16 10 N -0.50 -6.06 4.83 -224.01 -1.08 -7.14 16 11 C 0.10 1.25 4.64 -4.97 -0.02 1.23 16 12 C -0.17 -2.63 4.78 -104.59 -0.50 -3.13 16 13 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 14 C -0.22 -3.93 9.21 -39.38 -0.36 -4.29 16 15 C 0.24 4.93 6.55 -83.79 -0.55 4.38 16 16 N -0.62 -13.31 2.99 -181.00 -0.54 -13.85 16 17 C 0.10 1.79 10.23 59.85 0.61 2.40 16 18 C 0.25 6.29 4.96 -5.19 -0.03 6.26 16 19 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 20 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 23 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 C -0.19 -3.81 9.21 -39.38 -0.36 -4.17 16 28 C -0.07 -1.15 8.44 -39.61 -0.33 -1.48 16 29 H 0.05 0.43 8.05 -51.93 -0.42 0.01 16 30 H 0.06 0.67 6.53 -51.93 -0.34 0.33 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.69 6.88 -51.93 -0.36 0.33 16 33 H 0.06 0.47 6.63 -51.92 -0.34 0.13 16 34 H 0.06 0.51 6.83 -51.93 -0.35 0.16 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.39 6.65 -51.93 -0.35 0.04 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 39 H 0.09 1.20 7.71 -51.92 -0.40 0.79 16 40 H 0.04 0.52 7.47 -51.93 -0.39 0.13 16 41 H 0.03 0.41 7.92 -51.93 -0.41 0.00 16 42 H 0.08 0.98 5.31 -51.93 -0.28 0.71 16 43 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.11 1.80 6.14 -52.49 -0.32 1.48 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.82 6.20 -51.93 -0.32 0.49 16 47 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 48 H 0.04 0.93 6.19 -51.93 -0.32 0.61 16 49 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 50 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.13 2.92 6.14 -52.49 -0.32 2.59 16 52 H 0.11 1.65 7.55 -52.49 -0.40 1.26 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -28.45 391.69 -11.55 -40.00 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -9.02 Total: 1.57 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -2.53 Total: -17.87 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.89 Total: -46.01 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.45 -11.55 -40.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187580791.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.264 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds