Wall clock time and date at job start Tue Mar 31 2020 11:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47325 * 2 1 4 4 H 1.08997 * 110.07361 * 56.16229 * 3 2 1 5 5 C 1.53996 * 109.91967 * 177.37016 * 3 2 1 6 6 H 1.09004 * 110.30986 * 239.49215 * 5 3 2 7 7 C 1.53005 * 110.30611 * 1.65476 * 5 3 2 8 8 C 1.54596 * 105.14198 * 120.57420 * 5 3 2 9 9 C 1.54929 * 102.92151 * 21.95616 * 8 5 3 10 10 N 1.47909 * 109.91383 * 294.95450 * 3 2 1 11 11 C 1.46901 * 110.99618 * 94.80516 * 10 3 2 12 12 C 1.50702 * 109.46801 * 175.94040 * 11 10 3 13 13 C 1.38288 * 119.92190 * 89.99945 * 12 11 10 14 14 C 1.38107 * 120.07458 * 179.97438 * 13 12 11 15 15 C 1.38913 * 119.92312 * 0.02562 * 14 13 12 16 16 N 1.39674 * 120.07336 * 179.97438 * 15 14 13 17 17 C 1.46498 * 120.00338 * 0.02562 * 16 15 14 18 18 C 1.46498 * 119.99852 * 179.97438 * 16 15 14 19 19 C 1.50702 * 109.47344 * 270.00392 * 18 16 15 20 20 H 1.08001 * 119.99943 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99641 * 180.02562 * 19 18 16 22 22 N 1.31508 * 120.00504 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99568 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47208 * 89.99876 * 23 21 19 25 25 H 1.48502 * 109.46933 * 210.00176 * 23 21 19 26 26 H 1.48499 * 109.47075 * 329.99568 * 23 21 19 27 27 C 1.38908 * 119.85133 * 0.25616 * 15 14 13 28 28 C 1.38107 * 119.92435 * 359.48755 * 27 15 14 29 29 H 1.08999 * 109.47065 * 309.62379 * 1 2 3 30 30 H 1.08998 * 109.47291 * 69.62206 * 1 2 3 31 31 H 1.08997 * 109.47281 * 189.62073 * 1 2 3 32 32 H 1.09004 * 109.47265 * 239.99194 * 2 1 3 33 33 H 1.09009 * 109.47310 * 119.99452 * 2 1 3 34 34 H 1.09000 * 109.46768 * 60.00709 * 7 5 3 35 35 H 1.08998 * 109.47059 * 180.02562 * 7 5 3 36 36 H 1.08998 * 109.47337 * 300.00076 * 7 5 3 37 37 H 1.09002 * 110.72458 * 140.31714 * 8 5 3 38 38 H 1.09006 * 110.72018 * 263.60034 * 8 5 3 39 39 H 1.09008 * 110.66766 * 204.14862 * 9 8 5 40 40 H 1.08999 * 110.67009 * 81.02216 * 9 8 5 41 41 H 1.08999 * 109.47230 * 55.94462 * 11 10 3 42 42 H 1.08993 * 109.46853 * 295.93774 * 11 10 3 43 43 H 1.07998 * 119.96392 * 359.95582 * 13 12 11 44 44 H 1.07995 * 120.04089 * 180.02562 * 14 13 12 45 45 H 1.09002 * 109.46950 * 89.99048 * 17 16 15 46 46 H 1.09003 * 109.46694 * 330.00226 * 17 16 15 47 47 H 1.08995 * 109.47220 * 209.99707 * 17 16 15 48 48 H 1.09005 * 109.47514 * 30.00580 * 18 16 15 49 49 H 1.08999 * 109.47140 * 150.00506 * 18 16 15 50 50 H 0.97005 * 120.00084 * 180.02562 * 22 21 19 51 51 H 1.07999 * 120.03834 * 179.72362 * 27 15 14 52 52 H 1.08000 * 119.96369 * 180.25640 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6272 1.9852 0.8503 5 6 3.5785 1.4549 0.0664 6 1 3.9145 1.9904 0.9545 7 6 4.1214 0.0245 0.0704 8 6 4.0318 2.1975 -1.2115 9 6 2.7790 3.0246 -1.5944 10 7 1.6548 2.1130 -1.2608 11 6 0.4011 2.8610 -1.0974 12 6 0.0935 3.6095 -2.3687 13 6 -0.6636 3.0081 -3.3574 14 6 -0.9478 3.6913 -4.5235 15 6 -0.4718 4.9840 -4.7028 16 7 -0.7569 5.6777 -5.8811 17 6 -1.5592 5.0424 -6.9293 18 6 -0.2545 7.0410 -6.0682 19 6 -1.2661 8.0260 -5.5413 20 1 -2.1906 7.6718 -5.1097 21 6 -1.0113 9.3792 -5.6102 22 7 0.1142 9.8106 -6.1361 23 14 -2.2650 10.6001 -4.9563 24 1 -1.9890 10.8732 -3.5229 25 1 -2.1728 11.8655 -5.7280 26 1 -3.6297 10.0321 -5.0982 27 6 0.2933 5.5830 -3.7101 28 6 0.5694 4.8960 -2.5443 29 1 -0.3633 0.6554 0.7915 30 1 -0.3634 0.3578 -0.9633 31 1 -0.3634 -1.0132 0.1717 32 1 1.8933 -0.5140 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.8088 -0.4852 -0.8410 35 1 5.2101 0.0492 0.1180 36 1 3.7322 -0.5095 0.9372 37 1 4.8762 2.8529 -0.9977 38 1 4.2823 1.4888 -2.0010 39 1 2.7825 3.2575 -2.6593 40 1 2.7238 3.9368 -1.0004 41 1 0.5049 3.5689 -0.2751 42 1 -0.4103 2.1668 -0.8792 43 1 -1.0327 2.0028 -3.2176 44 1 -1.5394 3.2213 -5.2950 45 1 -2.6141 5.2596 -6.7614 46 1 -1.4019 3.9641 -6.9039 47 1 -1.2587 5.4306 -7.9024 48 1 0.6843 7.1599 -5.5272 49 1 -0.0878 7.2243 -7.1297 50 1 0.2936 10.7627 -6.1842 51 1 0.6687 6.5861 -3.8483 52 1 1.1607 5.3626 -1.7703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187580791.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:49 Heat of formation + Delta-G solvation = 14.622820 kcal Electronic energy + Delta-G solvation = -26939.980561 eV Core-core repulsion = 23517.246691 eV Total energy + Delta-G solvation = -3422.733870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.97014 -40.03567 -37.41516 -35.02599 -34.36693 -34.02475 -31.90139 -31.20717 -29.64503 -29.38314 -27.58696 -26.37645 -25.41112 -24.42240 -23.12999 -22.98937 -21.80049 -20.97894 -19.84617 -18.66045 -18.10746 -17.22863 -16.92554 -16.48767 -16.16684 -15.94798 -15.51909 -15.34726 -14.87112 -14.81833 -14.68408 -14.46261 -14.28280 -14.06640 -14.00828 -13.54220 -13.40846 -13.20489 -13.15768 -13.03923 -12.75304 -12.69811 -12.60379 -12.54523 -12.37453 -12.23988 -12.03556 -11.83278 -11.76312 -11.62197 -11.45026 -11.32380 -11.19265 -11.11831 -10.65631 -10.40160 -9.66782 -9.26178 -8.37171 -7.80594 -6.38723 0.69929 0.83766 1.35535 1.36219 1.47158 2.32974 2.62722 2.95482 3.04725 3.35612 3.69202 3.77326 3.98793 4.04638 4.14758 4.23841 4.26710 4.36737 4.40385 4.44424 4.49411 4.59184 4.62278 4.67145 4.70501 4.71787 4.79450 4.83585 4.86953 4.90518 4.93981 5.00104 5.02386 5.10803 5.13152 5.16782 5.19798 5.22811 5.24142 5.32819 5.36551 5.41635 5.52950 5.58422 5.60959 5.67812 5.69081 5.90125 6.06230 6.11470 6.17620 6.27234 6.49047 6.81658 6.92943 7.33114 8.81963 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.002804 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.224723 B = 9984.750867 C =10364.659302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 C 0.065 3.935 4 H 0.047 0.953 5 C -0.097 4.097 6 H 0.076 0.924 7 C -0.138 4.138 8 C -0.117 4.117 9 C 0.038 3.962 10 N -0.507 5.507 11 C 0.101 3.899 12 C -0.155 4.155 13 C -0.049 4.049 14 C -0.217 4.217 15 C 0.214 3.786 16 N -0.632 5.632 17 C 0.100 3.900 18 C 0.267 3.733 19 C -0.541 4.541 20 H 0.048 0.952 21 C 0.012 3.988 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.275 1.275 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.214 4.214 28 C -0.066 4.066 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.133 0.867 45 H 0.039 0.961 46 H 0.084 0.916 47 H 0.061 0.939 48 H 0.010 0.990 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.094 0.906 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.330 -20.907 12.807 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.139 4.139 3 C -0.043 4.043 4 H 0.065 0.935 5 C -0.116 4.116 6 H 0.095 0.905 7 C -0.195 4.195 8 C -0.155 4.155 9 C -0.090 4.090 10 N -0.231 5.231 11 C -0.026 4.026 12 C -0.157 4.157 13 C -0.068 4.068 14 C -0.239 4.239 15 C 0.109 3.891 16 N -0.340 5.340 17 C -0.043 4.043 18 C 0.145 3.855 19 C -0.580 4.580 20 H 0.066 0.934 21 C -0.187 4.187 22 N -0.566 5.566 23 Si 0.786 3.214 24 H -0.200 1.200 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.237 4.237 28 C -0.085 4.085 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.114 0.886 43 H 0.157 0.843 44 H 0.151 0.849 45 H 0.058 0.942 46 H 0.102 0.898 47 H 0.080 0.920 48 H 0.028 0.972 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.112 0.888 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.277 -21.020 12.143 24.649 hybrid contribution -0.383 2.248 0.446 2.324 sum 3.894 -18.772 12.588 22.935 Atomic orbital electron populations 1.21884 0.96291 1.01522 1.01468 1.21589 0.95551 0.94556 1.02254 1.22581 0.95001 0.96251 0.90494 0.93513 1.22023 0.93850 0.97864 0.97894 0.90510 1.21883 1.00536 0.94646 1.02401 1.22574 0.96569 0.98674 0.97661 1.23120 0.91153 0.94424 1.00334 1.64794 1.01659 1.26349 1.30317 1.21146 0.93536 0.95330 0.92601 1.19460 1.03772 0.94379 0.98126 1.20838 0.95458 0.98950 0.91537 1.20802 1.08442 0.93737 1.00952 1.18186 0.92801 0.91656 0.86439 1.46954 1.55988 1.15032 1.16041 1.21588 0.94407 0.98163 0.90148 1.18785 0.93602 0.77926 0.95171 1.21770 1.04318 0.91850 1.40056 0.93406 1.25781 0.97450 1.00127 0.95330 1.70033 1.25399 1.15490 1.45719 0.85510 0.79252 0.78197 0.78455 1.20035 1.20154 1.19400 1.20720 1.06184 1.00720 0.96097 1.20762 0.97853 0.94435 0.95470 0.93292 0.92824 0.92273 0.91543 0.90386 0.92397 0.92507 0.91354 0.90629 0.90970 0.92024 0.94563 0.95002 0.88584 0.84262 0.84948 0.94246 0.89788 0.92013 0.97205 0.97203 0.92365 0.88793 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.53 71.98 0.61 -1.72 16 2 C -0.10 -1.52 4.44 30.59 0.14 -1.38 16 3 C 0.06 1.15 2.61 45.06 0.12 1.27 16 4 H 0.05 0.86 7.67 -2.39 -0.02 0.84 16 5 C -0.10 -1.53 3.59 -9.91 -0.04 -1.56 16 6 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 7 C -0.14 -1.72 7.92 71.98 0.57 -1.15 16 8 C -0.12 -2.17 6.61 31.80 0.21 -1.96 16 9 C 0.04 0.89 5.07 86.65 0.44 1.33 16 10 N -0.51 -11.32 4.83 -862.62 -4.16 -15.48 16 11 C 0.10 2.42 4.64 85.56 0.40 2.81 16 12 C -0.15 -4.64 4.78 -19.84 -0.09 -4.74 16 13 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 14 C -0.22 -7.36 9.21 22.40 0.21 -7.15 16 15 C 0.21 8.92 6.55 38.21 0.25 9.17 16 16 N -0.63 -28.27 2.99 -726.56 -2.17 -30.45 16 17 C 0.10 3.55 10.23 127.77 1.31 4.86 16 18 C 0.27 14.27 4.96 85.63 0.42 14.69 16 19 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 20 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 21 C 0.01 0.70 5.46 84.66 0.46 1.16 16 22 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 23 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 24 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 C -0.21 -9.18 9.21 22.40 0.21 -8.98 16 28 C -0.07 -2.31 8.44 22.25 0.19 -2.13 16 29 H 0.05 0.73 8.05 -2.39 -0.02 0.71 16 30 H 0.05 0.94 6.53 -2.39 -0.02 0.92 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 1.09 6.88 -2.38 -0.02 1.07 16 33 H 0.08 0.92 6.63 -2.38 -0.02 0.91 16 34 H 0.06 0.79 6.83 -2.39 -0.02 0.78 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.70 6.65 -2.39 -0.02 0.69 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.37 7.84 -2.38 -0.02 1.35 16 39 H 0.06 1.75 7.71 -2.38 -0.02 1.73 16 40 H 0.04 0.89 7.47 -2.39 -0.02 0.87 16 41 H 0.03 0.77 7.92 -2.39 -0.02 0.75 16 42 H 0.10 2.05 5.31 -2.39 -0.01 2.03 16 43 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 44 H 0.13 3.90 6.14 -2.91 -0.02 3.89 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 46 H 0.08 2.43 6.20 -2.39 -0.01 2.41 16 47 H 0.06 2.13 7.89 -2.39 -0.02 2.12 16 48 H 0.01 0.58 6.19 -2.38 -0.01 0.56 16 49 H 0.01 0.56 7.89 -2.39 -0.02 0.54 16 50 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 51 H 0.09 4.64 6.14 -2.91 -0.02 4.62 16 52 H 0.11 3.70 7.55 -2.91 -0.02 3.68 16 Total: -1.00 -63.27 391.69 2.71 -60.56 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.88 Total: 20.80 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 5.86 Total: -27.39 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -6.05 Total: -100.61 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -63.27 2.71 -60.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187580791.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.183 kcal (2) G-P(sol) polarization free energy of solvation -63.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds