Wall clock time and date at job start Tue Mar 31 2020 11:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47370 * 2 1 4 4 N 1.46897 * 109.47164 * 120.00011 * 2 1 3 5 5 C 1.46901 * 111.00103 * 275.00115 * 4 2 1 6 6 C 1.53000 * 109.47143 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47398 * 54.99743 * 6 5 4 8 8 C 1.47201 * 109.46973 * 294.99668 * 6 5 4 9 9 N 4.90934 * 82.27683 * 119.13486 * 2 1 3 10 10 C 1.53002 * 109.47233 * 174.99916 * 6 5 4 11 11 C 1.50696 * 109.47344 * 184.99683 * 10 6 5 12 12 H 1.08002 * 119.99611 * 0.02562 * 11 10 6 13 13 C 1.37875 * 119.99982 * 179.97438 * 11 10 6 14 14 N 1.31514 * 119.99909 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99930 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47363 * 60.00349 * 15 13 11 17 17 H 1.48503 * 109.47300 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47448 * 300.00298 * 15 13 11 19 19 C 1.53004 * 109.47160 * 239.99866 * 2 1 3 20 20 C 1.52994 * 109.47160 * 180.02562 * 19 2 1 21 21 C 1.53004 * 109.47160 * 179.97438 * 20 19 2 22 22 C 1.53005 * 109.46783 * 300.00257 * 21 20 19 23 23 C 1.52992 * 109.47206 * 60.00197 * 22 21 20 24 24 C 1.52998 * 109.47514 * 59.99679 * 23 22 21 25 25 C 1.52999 * 109.47037 * 299.99870 * 24 23 22 26 26 C 1.52998 * 109.46994 * 60.00000 * 21 20 19 27 27 C 1.52998 * 109.47276 * 300.00149 * 25 24 23 28 28 C 1.52998 * 109.46983 * 300.00401 * 19 2 1 29 29 H 1.08999 * 109.47364 * 300.00054 * 1 2 3 30 30 H 1.08998 * 109.47175 * 59.99829 * 1 2 3 31 31 H 1.09002 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.00904 * 110.99620 * 38.95150 * 4 2 1 33 33 H 1.08990 * 109.47350 * 59.99906 * 5 4 2 34 34 H 1.09001 * 109.46871 * 299.99769 * 5 4 2 35 35 H 1.09008 * 109.46873 * 304.99791 * 10 6 5 36 36 H 1.08997 * 109.47047 * 64.99480 * 10 6 5 37 37 H 0.97003 * 119.99535 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.47370 * 300.00134 * 20 19 2 39 39 H 1.09007 * 109.46910 * 60.00481 * 20 19 2 40 40 H 1.08994 * 109.47380 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47305 * 299.99543 * 22 21 20 42 42 H 1.09006 * 109.46840 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47094 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.46951 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.47413 * 60.00274 * 24 23 22 46 46 H 1.08995 * 109.47184 * 179.97438 * 25 24 23 47 47 H 1.09006 * 109.47110 * 180.02562 * 26 21 20 48 48 H 1.09002 * 109.46952 * 60.00223 * 26 21 20 49 49 H 1.08994 * 109.47124 * 299.99515 * 27 25 24 50 50 H 1.09002 * 109.47129 * 179.97438 * 27 25 24 51 51 H 1.08998 * 109.47087 * 299.99532 * 28 19 2 52 52 H 1.09001 * 109.47667 * 59.99887 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 1 3.5520 -1.0011 3.3388 8 6 1.6228 -1.5692 3.9554 9 7 0.8702 -2.3685 4.2493 10 6 2.7801 0.4460 4.7356 11 6 3.4010 -0.2732 5.9053 12 1 3.6409 -1.3234 5.8278 13 6 3.6637 0.4096 7.0738 14 7 3.3720 1.6886 7.1679 15 14 4.4341 -0.4817 8.5234 16 1 5.7552 -1.0288 8.1229 17 1 4.6124 0.4683 9.6508 18 1 3.5465 -1.5935 8.9494 19 6 2.0400 -0.7213 -1.2493 20 6 3.5699 -0.7219 -1.2489 21 6 4.0799 -1.4437 -2.4979 22 6 3.5693 -2.8860 -2.4975 23 6 2.0394 -2.8854 -2.4979 24 6 1.5299 -2.1644 -3.7474 25 6 2.0404 -0.7221 -3.7477 26 6 3.5705 -0.7227 -3.7474 27 6 1.5305 -0.0003 -2.4988 28 6 1.5299 -2.1637 -1.2492 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.4494 -1.4979 1.4100 33 1 1.0871 0.6163 2.5525 34 1 2.7588 1.0462 2.1182 35 1 3.4318 1.2620 4.4232 36 1 1.8103 0.8476 5.0292 37 1 3.5566 2.1689 7.9902 38 1 3.9337 0.3057 -1.2487 39 1 3.9328 -1.2360 -0.3589 40 1 5.1699 -1.4445 -2.4974 41 1 3.9323 -3.3998 -1.6073 42 1 3.9323 -3.4002 -3.3875 43 1 1.6756 -3.9129 -2.4980 44 1 0.4399 -2.1636 -3.7474 45 1 1.8931 -2.6786 -4.6372 46 1 1.6779 -0.2085 -4.6381 47 1 3.9334 -1.2372 -4.6372 48 1 3.9342 0.3049 -3.7476 49 1 0.4405 0.0002 -2.4990 50 1 1.8946 1.0272 -2.4988 51 1 1.8932 -2.6776 -0.3593 52 1 0.4399 -2.1638 -1.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194080050.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:43 Heat of formation + Delta-G solvation = -22.477902 kcal Electronic energy + Delta-G solvation = -27763.644719 eV Core-core repulsion = 24339.302041 eV Total energy + Delta-G solvation = -3424.342678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68030 -37.78915 -36.04775 -33.97409 -32.87605 -32.69194 -32.61048 -30.98294 -28.85349 -26.45797 -26.02958 -25.67849 -23.55679 -22.50040 -21.79254 -21.39857 -21.37302 -19.48676 -17.62536 -16.68786 -16.52665 -15.49925 -15.06545 -14.68842 -14.57975 -14.55027 -14.46711 -14.40133 -13.76744 -13.40973 -13.37437 -13.20722 -13.09294 -12.76233 -12.70341 -12.45974 -12.41883 -12.21341 -12.04528 -11.67445 -11.64385 -11.32791 -11.21617 -11.02213 -10.92556 -10.82733 -10.82088 -10.78343 -10.70562 -10.64395 -10.54489 -10.25535 -9.77548 -9.67226 -9.62308 -9.47340 -9.21255 -8.44655 -8.19131 -6.08957 -4.12062 3.31572 3.35708 3.39371 3.58375 3.63737 4.21355 4.38708 4.41612 4.43239 4.51314 4.81994 4.86296 5.03684 5.09504 5.13243 5.14820 5.17063 5.26099 5.28962 5.29494 5.31408 5.35472 5.40484 5.48876 5.60223 5.61366 5.68684 5.69275 5.71422 5.74629 5.89812 5.91609 5.92404 5.99080 6.01349 6.01506 6.07341 6.13043 6.14859 6.20528 6.28187 6.37683 6.41156 6.46537 6.53147 6.57640 6.64361 7.20907 7.44203 7.51268 7.54845 7.86019 8.24038 8.41817 8.92343 9.53308 11.01897 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.002836 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.196608 B = 9871.634292 C = 9989.358363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.093 3.907 3 H 0.079 0.921 4 N -0.682 5.682 5 C 0.068 3.932 6 C 0.007 3.993 7 H 0.110 0.890 8 C 0.242 3.758 9 N -0.478 5.478 10 C 0.033 3.967 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.036 4.036 20 C -0.093 4.093 21 C -0.088 4.088 22 C -0.106 4.106 23 C -0.085 4.085 24 C -0.106 4.106 25 C -0.084 4.084 26 C -0.107 4.107 27 C -0.105 4.105 28 C -0.103 4.103 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.337 0.663 33 H 0.033 0.967 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.060 0.940 51 H 0.069 0.931 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.573 -2.856 -24.881 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.017 4.017 3 H 0.097 0.903 4 N -0.312 5.312 5 C -0.062 4.062 6 C -0.015 4.015 7 H 0.128 0.872 8 C -0.075 4.075 9 N -0.155 5.155 10 C -0.005 4.005 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.037 4.037 20 C -0.131 4.131 21 C -0.106 4.106 22 C -0.144 4.144 23 C -0.104 4.104 24 C -0.144 4.144 25 C -0.102 4.102 26 C -0.145 4.145 27 C -0.143 4.143 28 C -0.141 4.141 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.088 0.912 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.031 -3.825 -24.464 24.845 hybrid contribution -0.308 -0.009 1.080 1.123 sum -2.340 -3.834 -23.384 23.812 Atomic orbital electron populations 1.22616 0.97767 1.02171 1.02065 1.21550 0.92119 0.97798 0.90250 0.90327 1.60670 1.57050 1.09759 1.03769 1.22094 1.00146 0.95300 0.88696 1.19333 0.93868 0.91887 0.96423 0.87209 1.29360 0.93304 0.93253 0.91544 1.81053 1.11949 1.12128 1.10418 1.19147 0.98175 0.93188 0.90028 1.21114 1.41322 0.96148 0.97895 0.92581 1.24948 0.95536 0.94824 0.98641 1.69930 1.47637 1.08082 1.27415 0.86659 0.79939 0.79515 0.81998 1.19997 1.21201 1.20289 1.20368 0.95800 0.94691 0.92845 1.21450 0.93961 1.00140 0.97540 1.21086 0.99212 0.94986 0.95342 1.21515 0.95094 0.96397 1.01353 1.21031 0.95668 0.98597 0.95094 1.21526 0.99883 0.95449 0.97536 1.21021 0.95637 0.95881 0.97711 1.21539 0.95107 1.00199 0.97608 1.21639 1.00128 0.98648 0.93872 1.21590 0.99669 0.95210 0.97623 0.92728 0.91984 0.92339 0.84427 0.94860 0.89204 0.94262 0.95854 0.92758 0.92583 0.90063 0.91615 0.91845 0.92695 0.91805 0.92391 0.92487 0.91809 0.92590 0.92211 0.92000 0.92132 0.91191 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 8.46 37.15 0.31 -1.61 16 2 C 0.09 0.98 1.87 -67.71 -0.13 0.86 16 3 H 0.08 0.85 7.80 -51.93 -0.40 0.45 16 4 N -0.68 -8.49 4.99 -106.73 -0.53 -9.02 16 5 C 0.07 0.97 4.92 -3.82 -0.02 0.96 16 6 C 0.01 0.12 2.42 -93.40 -0.23 -0.10 16 7 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 8 C 0.24 4.86 12.98 -20.74 -0.27 4.59 16 9 N -0.48 -10.39 18.54 42.17 0.78 -9.61 16 10 C 0.03 0.77 4.42 -27.88 -0.12 0.64 16 11 C -0.53 -14.03 8.60 -34.44 -0.30 -14.33 16 12 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 15 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.04 -0.35 0.36 -154.51 -0.06 -0.40 16 20 C -0.09 -0.94 4.32 -26.73 -0.12 -1.06 16 21 C -0.09 -0.79 3.20 -90.62 -0.29 -1.08 16 22 C -0.11 -0.95 5.19 -26.73 -0.14 -1.09 16 23 C -0.09 -0.76 3.19 -90.65 -0.29 -1.05 16 24 C -0.11 -0.87 5.19 -26.73 -0.14 -1.00 16 25 C -0.08 -0.68 3.19 -90.62 -0.29 -0.97 16 26 C -0.11 -0.88 5.19 -26.73 -0.14 -1.02 16 27 C -0.11 -0.90 4.12 -26.73 -0.11 -1.01 16 28 C -0.10 -1.02 3.85 -26.76 -0.10 -1.12 16 29 H 0.05 0.62 7.45 -51.93 -0.39 0.23 16 30 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 31 H 0.06 0.61 6.42 -51.93 -0.33 0.28 16 32 H 0.34 4.50 6.80 -39.29 -0.27 4.24 16 33 H 0.03 0.49 7.43 -51.93 -0.39 0.11 16 34 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 35 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.95 7.60 -51.93 -0.39 0.55 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 50 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.07 0.78 7.21 -51.93 -0.37 0.41 16 52 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -28.27 382.57 -10.20 -38.47 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -9.42 Total: 0.06 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.51 Total: -17.17 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.99 Total: -43.47 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.27 -10.20 -38.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194080050.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.993 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds