Wall clock time and date at job start Tue Mar 31 2020 11:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47370 * 2 1 4 4 N 1.46897 * 109.47164 * 120.00011 * 2 1 3 5 5 C 1.46901 * 111.00103 * 275.00115 * 4 2 1 6 6 C 1.53000 * 109.47143 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47398 * 54.99743 * 6 5 4 8 8 C 1.47201 * 109.46973 * 294.99668 * 6 5 4 9 9 N 4.90934 * 82.27683 * 119.13486 * 2 1 3 10 10 C 1.53002 * 109.47233 * 174.99916 * 6 5 4 11 11 C 1.50696 * 109.47344 * 184.99683 * 10 6 5 12 12 H 1.08002 * 119.99611 * 0.02562 * 11 10 6 13 13 C 1.37875 * 119.99982 * 179.97438 * 11 10 6 14 14 N 1.31514 * 119.99909 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99930 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47363 * 60.00349 * 15 13 11 17 17 H 1.48503 * 109.47300 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47448 * 300.00298 * 15 13 11 19 19 C 1.53004 * 109.47160 * 239.99866 * 2 1 3 20 20 C 1.52994 * 109.47160 * 180.02562 * 19 2 1 21 21 C 1.53004 * 109.47160 * 179.97438 * 20 19 2 22 22 C 1.53005 * 109.46783 * 300.00257 * 21 20 19 23 23 C 1.52992 * 109.47206 * 60.00197 * 22 21 20 24 24 C 1.52998 * 109.47514 * 59.99679 * 23 22 21 25 25 C 1.52999 * 109.47037 * 299.99870 * 24 23 22 26 26 C 1.52998 * 109.46994 * 60.00000 * 21 20 19 27 27 C 1.52998 * 109.47276 * 300.00149 * 25 24 23 28 28 C 1.52998 * 109.46983 * 300.00401 * 19 2 1 29 29 H 1.08999 * 109.47364 * 300.00054 * 1 2 3 30 30 H 1.08998 * 109.47175 * 59.99829 * 1 2 3 31 31 H 1.09002 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.00904 * 110.99620 * 38.95150 * 4 2 1 33 33 H 1.08990 * 109.47350 * 59.99906 * 5 4 2 34 34 H 1.09001 * 109.46871 * 299.99769 * 5 4 2 35 35 H 1.09008 * 109.46873 * 304.99791 * 10 6 5 36 36 H 1.08997 * 109.47047 * 64.99480 * 10 6 5 37 37 H 0.97003 * 119.99535 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.47370 * 300.00134 * 20 19 2 39 39 H 1.09007 * 109.46910 * 60.00481 * 20 19 2 40 40 H 1.08994 * 109.47380 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47305 * 299.99543 * 22 21 20 42 42 H 1.09006 * 109.46840 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47094 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.46951 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.47413 * 60.00274 * 24 23 22 46 46 H 1.08995 * 109.47184 * 179.97438 * 25 24 23 47 47 H 1.09006 * 109.47110 * 180.02562 * 26 21 20 48 48 H 1.09002 * 109.46952 * 60.00223 * 26 21 20 49 49 H 1.08994 * 109.47124 * 299.99515 * 27 25 24 50 50 H 1.09002 * 109.47129 * 179.97438 * 27 25 24 51 51 H 1.08998 * 109.47087 * 299.99532 * 28 19 2 52 52 H 1.09001 * 109.47667 * 59.99887 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 1 3.5520 -1.0011 3.3388 8 6 1.6228 -1.5692 3.9554 9 7 0.8702 -2.3685 4.2493 10 6 2.7801 0.4460 4.7356 11 6 3.4010 -0.2732 5.9053 12 1 3.6409 -1.3234 5.8278 13 6 3.6637 0.4096 7.0738 14 7 3.3720 1.6886 7.1679 15 14 4.4341 -0.4817 8.5234 16 1 5.7552 -1.0288 8.1229 17 1 4.6124 0.4683 9.6508 18 1 3.5465 -1.5935 8.9494 19 6 2.0400 -0.7213 -1.2493 20 6 3.5699 -0.7219 -1.2489 21 6 4.0799 -1.4437 -2.4979 22 6 3.5693 -2.8860 -2.4975 23 6 2.0394 -2.8854 -2.4979 24 6 1.5299 -2.1644 -3.7474 25 6 2.0404 -0.7221 -3.7477 26 6 3.5705 -0.7227 -3.7474 27 6 1.5305 -0.0003 -2.4988 28 6 1.5299 -2.1637 -1.2492 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.4494 -1.4979 1.4100 33 1 1.0871 0.6163 2.5525 34 1 2.7588 1.0462 2.1182 35 1 3.4318 1.2620 4.4232 36 1 1.8103 0.8476 5.0292 37 1 3.5566 2.1689 7.9902 38 1 3.9337 0.3057 -1.2487 39 1 3.9328 -1.2360 -0.3589 40 1 5.1699 -1.4445 -2.4974 41 1 3.9323 -3.3998 -1.6073 42 1 3.9323 -3.4002 -3.3875 43 1 1.6756 -3.9129 -2.4980 44 1 0.4399 -2.1636 -3.7474 45 1 1.8931 -2.6786 -4.6372 46 1 1.6779 -0.2085 -4.6381 47 1 3.9334 -1.2372 -4.6372 48 1 3.9342 0.3049 -3.7476 49 1 0.4405 0.0002 -2.4990 50 1 1.8946 1.0272 -2.4988 51 1 1.8932 -2.6776 -0.3593 52 1 0.4399 -2.1638 -1.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194080050.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:42 Heat of formation + Delta-G solvation = -35.105837 kcal Electronic energy + Delta-G solvation = -27764.192307 eV Core-core repulsion = 24339.302041 eV Total energy + Delta-G solvation = -3424.890267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.41618 -39.04885 -37.35784 -35.66686 -34.37833 -33.41196 -33.39047 -32.33418 -29.89756 -28.00962 -26.75514 -26.51974 -24.81335 -23.56396 -23.52446 -22.14274 -22.07514 -20.31448 -18.57507 -18.35235 -18.14467 -16.72645 -16.55528 -15.86480 -15.55241 -15.30506 -15.27670 -15.17701 -14.87844 -14.65481 -14.46166 -14.32198 -14.10562 -14.02532 -13.78432 -13.75033 -13.40507 -13.30427 -13.15930 -13.07211 -13.03498 -12.65327 -12.50954 -12.46586 -12.31919 -12.08098 -11.99222 -11.62494 -11.56131 -11.55763 -11.50772 -11.39220 -11.35336 -11.17184 -10.55139 -10.46733 -10.36145 -10.32758 -9.22087 -8.19636 -6.27921 1.40736 1.41977 1.49240 1.94850 1.96881 2.41190 3.15418 3.21271 3.26505 3.65375 3.71747 3.76687 4.06445 4.22277 4.29947 4.31233 4.42042 4.42867 4.44173 4.45592 4.52290 4.56366 4.59723 4.63350 4.66526 4.70240 4.77724 4.90348 4.92078 4.94308 4.99941 5.01390 5.07140 5.10134 5.23520 5.24633 5.26932 5.27934 5.31621 5.34068 5.38040 5.42433 5.47126 5.51913 5.62847 5.67183 5.71899 5.79162 5.79466 5.85472 6.13121 6.24440 6.43167 6.76054 6.87249 7.40563 8.91087 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.002836 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.196608 B = 9871.634292 C = 9989.358363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.093 3.907 3 H 0.081 0.919 4 N -0.679 5.679 5 C 0.080 3.920 6 C 0.020 3.980 7 H 0.121 0.879 8 C 0.252 3.748 9 N -0.506 5.506 10 C 0.040 3.960 11 C -0.540 4.540 12 H 0.053 0.947 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.948 3.052 16 H -0.263 1.263 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.030 4.030 20 C -0.092 4.092 21 C -0.088 4.088 22 C -0.105 4.105 23 C -0.086 4.086 24 C -0.104 4.104 25 C -0.083 4.083 26 C -0.105 4.105 27 C -0.103 4.103 28 C -0.102 4.102 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.333 0.667 33 H 0.029 0.971 34 H 0.102 0.898 35 H 0.035 0.965 36 H -0.001 1.001 37 H 0.264 0.736 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.052 0.948 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -3.006 -26.630 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.016 4.016 3 H 0.099 0.901 4 N -0.309 5.309 5 C -0.050 4.050 6 C -0.002 4.002 7 H 0.139 0.861 8 C -0.064 4.064 9 N -0.184 5.184 10 C 0.001 3.999 11 C -0.578 4.578 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.773 3.227 16 H -0.187 1.187 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.031 4.031 20 C -0.129 4.129 21 C -0.106 4.106 22 C -0.143 4.143 23 C -0.104 4.104 24 C -0.141 4.141 25 C -0.101 4.101 26 C -0.142 4.142 27 C -0.141 4.141 28 C -0.139 4.139 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.047 0.953 34 H 0.120 0.880 35 H 0.054 0.946 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.070 0.930 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.721 -3.982 -26.229 26.585 hybrid contribution -0.405 0.026 1.617 1.667 sum -2.126 -3.956 -24.612 25.018 Atomic orbital electron populations 1.22564 0.97299 1.02017 1.02256 1.21622 0.92461 0.97816 0.89730 0.90129 1.60660 1.57303 1.09305 1.03589 1.21920 1.00012 0.95223 0.87873 1.19232 0.94232 0.90616 0.96152 0.86086 1.29694 0.92938 0.92980 0.90771 1.81051 1.12978 1.13128 1.11211 1.18964 0.96301 0.93791 0.90831 1.21535 1.40925 0.96242 0.99136 0.92841 1.25710 0.96240 0.95536 1.01254 1.70026 1.48867 1.09294 1.28128 0.85760 0.79442 0.78287 0.79165 1.18742 1.20685 1.20704 1.20302 0.95409 0.94511 0.92846 1.21403 0.94303 0.99864 0.97363 1.21078 0.99226 0.94947 0.95349 1.21502 0.95184 0.96398 1.01194 1.21034 0.95574 0.98661 0.95153 1.21512 1.00050 0.95420 0.97156 1.21037 0.95487 0.95825 0.97798 1.21523 0.95205 1.00256 0.97219 1.21629 1.00362 0.98691 0.93418 1.21554 0.99597 0.95335 0.97438 0.93912 0.90393 0.92654 0.84948 0.95253 0.87977 0.94634 0.98305 0.92704 0.92763 0.91979 0.91665 0.93040 0.91831 0.91825 0.92113 0.91713 0.90626 0.91812 0.91981 0.91589 0.91822 0.92958 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 8.46 71.98 0.61 -2.91 16 2 C 0.09 1.86 1.87 44.92 0.08 1.95 16 3 H 0.08 1.61 7.80 -2.39 -0.02 1.60 16 4 N -0.68 -16.45 4.99 -491.58 -2.46 -18.91 16 5 C 0.08 2.25 4.92 86.30 0.42 2.68 16 6 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 7 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 8 C 0.25 10.11 12.98 89.44 1.16 11.27 16 9 N -0.51 -21.99 18.54 20.01 0.37 -21.62 16 10 C 0.04 1.85 4.42 29.85 0.13 1.99 16 11 C -0.54 -28.83 8.60 25.60 0.22 -28.61 16 12 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 13 C 0.01 0.64 5.46 84.65 0.46 1.10 16 14 N -0.92 -53.31 13.29 21.45 0.28 -53.03 16 15 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 C -0.03 -0.53 0.36 -52.18 -0.02 -0.55 16 20 C -0.09 -1.76 4.32 30.59 0.13 -1.62 16 21 C -0.09 -1.46 3.20 -10.79 -0.03 -1.49 16 22 C -0.11 -1.77 5.19 30.59 0.16 -1.61 16 23 C -0.09 -1.41 3.19 -10.81 -0.03 -1.45 16 24 C -0.10 -1.45 5.19 30.59 0.16 -1.29 16 25 C -0.08 -1.13 3.19 -10.79 -0.03 -1.16 16 26 C -0.10 -1.47 5.19 30.59 0.16 -1.31 16 27 C -0.10 -1.54 4.12 30.59 0.13 -1.41 16 28 C -0.10 -1.90 3.85 30.58 0.12 -1.79 16 29 H 0.04 0.92 7.45 -2.39 -0.02 0.91 16 30 H 0.08 1.25 6.43 -2.39 -0.02 1.23 16 31 H 0.05 1.10 6.42 -2.39 -0.02 1.09 16 32 H 0.33 8.76 6.80 -89.69 -0.61 8.15 16 33 H 0.03 0.86 7.43 -2.39 -0.02 0.84 16 34 H 0.10 2.66 8.06 -2.39 -0.02 2.65 16 35 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 37 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 38 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.43 7.60 -2.38 -0.02 1.41 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 42 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 48 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 0.95 6.43 -2.39 -0.02 0.93 16 50 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.05 1.16 7.21 -2.39 -0.02 1.14 16 52 H 0.06 1.07 6.43 -2.39 -0.02 1.05 16 Total: -1.00 -59.57 382.57 4.29 -55.28 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.28 Total: 18.13 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 3.79 Total: -25.56 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -1.80 Total: -93.56 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -59.57 4.29 -55.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194080050.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.172 kcal (2) G-P(sol) polarization free energy of solvation -59.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds