Wall clock time and date at job start Tue Mar 31 2020 11:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.53925 * 2 1 4 4 C 1.53115 * 109.50152 * 239.89870 * 2 1 3 5 5 C 1.53120 * 109.21132 * 182.43745 * 4 2 1 6 6 C 1.53040 * 109.27976 * 57.62437 * 5 4 2 7 7 N 1.46844 * 109.52365 * 300.82294 * 6 5 4 8 8 C 1.46896 * 111.00323 * 185.83792 * 7 6 5 9 9 C 1.50695 * 109.47068 * 65.31687 * 8 7 6 10 10 C 1.38288 * 119.92756 * 264.84429 * 9 8 7 11 11 C 1.38103 * 120.07707 * 179.72565 * 10 9 8 12 12 C 1.38911 * 119.92308 * 0.54752 * 11 10 9 13 13 N 1.39669 * 120.07373 * 179.74650 * 12 11 10 14 14 C 1.46499 * 120.00036 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00337 * 359.97438 * 13 12 11 16 16 C 1.50705 * 109.47133 * 89.99617 * 15 13 12 17 17 H 1.07994 * 119.99779 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99648 * 180.02562 * 16 15 13 19 19 N 1.31517 * 119.99596 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00469 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47296 * 90.00015 * 20 18 16 22 22 H 1.48499 * 109.47281 * 210.00696 * 20 18 16 23 23 H 1.48502 * 109.46824 * 330.00237 * 20 18 16 24 24 C 1.38907 * 119.84908 * 359.73095 * 12 11 10 25 25 C 1.38105 * 119.93021 * 359.97438 * 24 12 11 26 26 C 1.46847 * 111.19794 * 61.73670 * 7 6 5 27 27 H 1.09004 * 109.46311 * 58.26956 * 26 7 6 28 28 C 1.53000 * 109.46435 * 178.24315 * 26 7 6 29 29 H 1.09003 * 109.47218 * 180.09710 * 1 2 3 30 30 H 1.08997 * 109.47327 * 300.09662 * 1 2 3 31 31 H 1.08997 * 109.47036 * 60.09996 * 1 2 3 32 32 H 1.09001 * 109.52295 * 62.50333 * 4 2 1 33 33 H 1.09002 * 109.52481 * 302.37380 * 4 2 1 34 34 H 1.09004 * 109.50777 * 177.56346 * 5 4 2 35 35 H 1.08996 * 109.50518 * 297.64256 * 5 4 2 36 36 H 1.09006 * 109.45822 * 60.83787 * 6 5 4 37 37 H 1.08997 * 109.46530 * 180.80378 * 6 5 4 38 38 H 1.09004 * 109.47332 * 185.32063 * 8 7 6 39 39 H 1.09010 * 109.47044 * 305.31757 * 8 7 6 40 40 H 1.08006 * 119.95613 * 359.97438 * 10 9 8 41 41 H 1.08004 * 120.03746 * 180.27414 * 11 10 9 42 42 H 1.08999 * 109.47473 * 90.00062 * 14 13 12 43 43 H 1.09007 * 109.47128 * 210.00123 * 14 13 12 44 44 H 1.09005 * 109.47350 * 329.99787 * 14 13 12 45 45 H 1.09002 * 109.47102 * 210.00000 * 15 13 12 46 46 H 1.09005 * 109.46738 * 329.99959 * 15 13 12 47 47 H 0.97002 * 120.00027 * 179.97438 * 19 18 16 48 48 H 1.08000 * 120.03628 * 179.97438 * 24 12 11 49 49 H 1.07995 * 119.96557 * 179.97438 * 25 24 12 50 50 H 1.09003 * 109.46879 * 53.73946 * 28 26 7 51 51 H 1.08999 * 109.47426 * 173.74305 * 28 26 7 52 52 H 1.08998 * 109.47425 * 293.74365 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2487 5 6 3.5711 -0.7734 -1.2115 6 6 4.0230 -1.4744 0.0717 7 7 3.5106 -0.7427 1.2372 8 6 4.0387 -1.3065 2.4866 9 6 5.5302 -1.0984 2.5407 10 6 6.3826 -2.1017 2.1174 11 6 7.7499 -1.9122 2.1603 12 6 8.2690 -0.7163 2.6399 13 7 9.6513 -0.5233 2.6896 14 6 10.1970 0.7388 3.1952 15 6 10.5558 -1.5828 2.2362 16 6 10.8378 -1.4076 0.7662 17 1 10.3881 -0.5891 0.2239 18 6 11.6693 -2.2928 0.1135 19 7 11.9159 -2.1396 -1.1692 20 14 12.4467 -3.7090 1.0513 21 1 11.5514 -4.8922 0.9927 22 1 13.7564 -4.0484 0.4392 23 1 12.6503 -3.3120 2.4677 24 6 7.4100 0.2873 3.0696 25 6 6.0436 0.0935 3.0184 26 6 2.0423 -0.7226 1.2481 27 1 1.6651 -1.7453 1.2548 28 6 1.5517 0.0098 2.4986 29 1 -0.3634 -1.0277 0.0017 30 1 -0.3634 0.5153 0.8891 31 1 -0.3633 0.5123 -0.8909 32 1 1.7157 -0.1871 -2.1398 33 1 1.6443 -1.7388 -1.2695 34 1 3.9386 -1.3256 -2.0765 35 1 3.9687 0.2413 -1.2318 36 1 3.6365 -2.4936 0.0840 37 1 5.1121 -1.4987 0.1081 38 1 3.5713 -0.8084 3.3361 39 1 3.8190 -2.3735 2.5252 40 1 5.9783 -3.0331 1.7492 41 1 8.4149 -2.6945 1.8255 42 1 10.3526 0.6623 4.2713 43 1 11.1481 0.9460 2.7044 44 1 9.4965 1.5473 2.9859 45 1 11.4901 -1.5267 2.7947 46 1 10.0902 -2.5541 2.4035 47 1 12.5011 -2.7622 -1.6284 48 1 7.8103 1.2181 3.4435 49 1 5.3753 0.8732 3.3527 50 1 2.0176 0.9939 2.5495 51 1 0.4685 0.1225 2.4522 52 1 1.8195 -0.5652 3.3850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245555623.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:12 Heat of formation + Delta-G solvation = 26.712857 kcal Electronic energy + Delta-G solvation = -27045.925069 eV Core-core repulsion = 23623.715462 eV Total energy + Delta-G solvation = -3422.209607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83709 -38.76024 -36.07703 -34.16910 -33.11480 -32.59284 -30.52359 -30.20148 -28.41232 -28.01819 -26.43373 -25.84749 -24.34694 -22.63592 -21.60960 -21.18975 -21.13377 -19.62092 -19.47514 -16.93711 -16.66242 -15.83554 -15.55617 -15.28745 -14.83194 -14.57210 -14.41976 -14.26369 -14.03903 -13.60479 -13.25735 -13.20883 -12.99564 -12.94870 -12.77130 -12.43625 -12.37819 -12.13933 -11.96781 -11.71952 -11.66437 -11.59877 -11.51867 -11.43302 -10.96690 -10.93749 -10.72694 -10.65916 -10.59823 -10.27222 -10.18430 -10.12393 -10.01447 -9.57861 -8.86382 -8.65796 -8.28925 -8.14658 -6.38846 -6.14444 -4.14334 2.08611 2.20540 3.21205 3.29105 3.29920 3.93933 4.07744 4.32116 4.56718 4.62832 4.67219 4.81771 5.04929 5.15942 5.22132 5.24038 5.28461 5.35026 5.38657 5.42269 5.48203 5.56422 5.59444 5.61795 5.70098 5.73397 5.79519 5.80822 5.86120 5.91542 5.96936 5.97504 6.02108 6.04263 6.15960 6.17258 6.24841 6.28449 6.33582 6.39210 6.42514 6.57517 6.75555 6.76255 7.03217 7.07434 7.16951 7.28129 7.35447 7.53122 7.56057 8.05988 8.35781 8.52001 8.93562 9.45483 10.98581 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.003079 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.975470 B = 9090.287750 C = 9943.086349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.054 3.946 7 N -0.527 5.527 8 C 0.106 3.894 9 C -0.162 4.162 10 C -0.068 4.068 11 C -0.188 4.188 12 C 0.240 3.760 13 N -0.612 5.612 14 C 0.099 3.901 15 C 0.221 3.779 16 C -0.534 4.534 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.872 3.128 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.266 1.266 24 C -0.218 4.218 25 C -0.050 4.050 26 C 0.087 3.913 27 H 0.034 0.966 28 C -0.151 4.151 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.026 0.974 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.265 0.735 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.065 0.935 51 H 0.060 0.940 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.159 3.250 6.488 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.096 0.904 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.073 4.073 7 N -0.252 5.252 8 C -0.020 4.020 9 C -0.165 4.165 10 C -0.087 4.087 11 C -0.210 4.210 12 C 0.134 3.866 13 N -0.318 5.318 14 C -0.045 4.045 15 C 0.100 3.900 16 C -0.572 4.572 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.699 3.301 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.241 4.241 25 C -0.069 4.069 26 C -0.022 4.022 27 H 0.052 0.948 28 C -0.208 4.208 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.132 0.868 49 H 0.128 0.872 50 H 0.084 0.916 51 H 0.079 0.921 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.640 3.677 6.309 20.954 hybrid contribution 0.377 -1.637 0.188 1.690 sum -19.263 2.040 6.497 20.432 Atomic orbital electron populations 1.21890 0.95349 1.01595 1.01708 1.21168 0.94685 1.00405 0.94002 0.90361 1.21647 0.96090 1.00102 0.97449 1.21578 0.95140 1.01871 0.96924 1.22115 1.01357 0.94084 0.89766 1.61983 1.06364 1.54545 1.02275 1.20902 0.92319 0.96789 0.92030 1.19161 0.93567 0.95836 1.07965 1.20665 0.92751 0.97696 0.97624 1.20772 0.95090 0.98096 1.07059 1.17900 0.83826 0.93186 0.91660 1.46698 1.02206 1.16459 1.66422 1.21487 0.99532 0.86241 0.97243 1.19650 0.88483 0.86235 0.95681 1.21485 1.28973 1.14243 0.92532 0.90546 1.24900 0.95955 0.97450 0.94725 1.69904 1.37084 1.37463 1.08831 0.86918 0.79361 0.83260 0.80603 1.19933 1.20964 1.19023 1.20564 0.93173 0.99318 1.11095 1.20468 0.93846 0.95651 0.96958 1.21588 0.87902 0.97445 0.95235 0.94787 1.22004 1.00726 1.01342 0.96774 0.92994 0.92318 0.92686 0.92077 0.92582 0.91652 0.91049 0.95617 0.89503 0.90294 0.95193 0.87499 0.85542 0.94587 0.91318 0.92369 0.95490 0.95554 0.92525 0.86842 0.87247 0.91617 0.92105 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.88 37.16 0.33 -0.80 16 2 C -0.08 -0.80 2.40 -90.54 -0.22 -1.02 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -1.14 5.28 -26.61 -0.14 -1.29 16 5 C -0.12 -1.39 6.10 -26.65 -0.16 -1.55 16 6 C 0.05 0.72 5.21 -3.83 -0.02 0.70 16 7 N -0.53 -6.63 4.49 -228.12 -1.02 -7.65 16 8 C 0.11 1.36 4.81 -4.98 -0.02 1.34 16 9 C -0.16 -2.50 4.72 -104.59 -0.49 -2.99 16 10 C -0.07 -1.15 8.18 -39.61 -0.32 -1.47 16 11 C -0.19 -3.72 9.21 -39.38 -0.36 -4.08 16 12 C 0.24 4.80 6.55 -83.79 -0.55 4.25 16 13 N -0.61 -12.83 2.99 -180.99 -0.54 -13.37 16 14 C 0.10 1.71 10.19 59.85 0.61 2.32 16 15 C 0.22 5.20 3.98 -5.19 -0.02 5.18 16 16 C -0.53 -14.84 9.94 -34.44 -0.34 -15.18 16 17 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 19 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 20 Si 0.87 20.72 27.47 -169.99 -4.67 16.06 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 24 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16 25 C -0.05 -0.78 9.71 -39.61 -0.38 -1.17 16 26 C 0.09 0.90 1.96 -67.72 -0.13 0.77 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 C -0.15 -1.36 8.40 37.16 0.31 -1.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 6.33 -51.93 -0.33 0.08 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 1.35 6.05 -51.93 -0.31 1.03 16 38 H 0.08 0.92 5.79 -51.93 -0.30 0.61 16 39 H 0.03 0.38 8.04 -51.92 -0.42 -0.04 16 40 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.13 2.70 6.14 -52.48 -0.32 2.38 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 1.22 8.07 -51.92 -0.42 0.80 16 44 H 0.06 0.91 6.20 -51.93 -0.32 0.58 16 45 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 46 H 0.03 0.62 5.63 -51.93 -0.29 0.33 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.11 1.78 6.14 -52.49 -0.32 1.45 16 49 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.06 0.46 6.15 -51.93 -0.32 0.14 16 52 H 0.05 0.49 6.50 -51.93 -0.34 0.15 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -29.65 390.05 -11.12 -40.77 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -9.15 Total: 2.77 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.38 Total: -18.25 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.79 Total: -47.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.65 -11.12 -40.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245555623.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.482 kcal (2) G-P(sol) polarization free energy of solvation -29.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds