Wall clock time and date at job start Tue Mar 31 2020 11:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.53925 * 2 1 4 4 C 1.53115 * 109.50152 * 239.89870 * 2 1 3 5 5 C 1.53120 * 109.21132 * 182.43745 * 4 2 1 6 6 C 1.53040 * 109.27976 * 57.62437 * 5 4 2 7 7 N 1.46844 * 109.52365 * 300.82294 * 6 5 4 8 8 C 1.46896 * 111.00323 * 185.83792 * 7 6 5 9 9 C 1.50695 * 109.47068 * 65.31687 * 8 7 6 10 10 C 1.38288 * 119.92756 * 264.84429 * 9 8 7 11 11 C 1.38103 * 120.07707 * 179.72565 * 10 9 8 12 12 C 1.38911 * 119.92308 * 0.54752 * 11 10 9 13 13 N 1.39669 * 120.07373 * 179.74650 * 12 11 10 14 14 C 1.46499 * 120.00036 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00337 * 359.97438 * 13 12 11 16 16 C 1.50705 * 109.47133 * 89.99617 * 15 13 12 17 17 H 1.07994 * 119.99779 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99648 * 180.02562 * 16 15 13 19 19 N 1.31517 * 119.99596 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00469 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47296 * 90.00015 * 20 18 16 22 22 H 1.48499 * 109.47281 * 210.00696 * 20 18 16 23 23 H 1.48502 * 109.46824 * 330.00237 * 20 18 16 24 24 C 1.38907 * 119.84908 * 359.73095 * 12 11 10 25 25 C 1.38105 * 119.93021 * 359.97438 * 24 12 11 26 26 C 1.46847 * 111.19794 * 61.73670 * 7 6 5 27 27 H 1.09004 * 109.46311 * 58.26956 * 26 7 6 28 28 C 1.53000 * 109.46435 * 178.24315 * 26 7 6 29 29 H 1.09003 * 109.47218 * 180.09710 * 1 2 3 30 30 H 1.08997 * 109.47327 * 300.09662 * 1 2 3 31 31 H 1.08997 * 109.47036 * 60.09996 * 1 2 3 32 32 H 1.09001 * 109.52295 * 62.50333 * 4 2 1 33 33 H 1.09002 * 109.52481 * 302.37380 * 4 2 1 34 34 H 1.09004 * 109.50777 * 177.56346 * 5 4 2 35 35 H 1.08996 * 109.50518 * 297.64256 * 5 4 2 36 36 H 1.09006 * 109.45822 * 60.83787 * 6 5 4 37 37 H 1.08997 * 109.46530 * 180.80378 * 6 5 4 38 38 H 1.09004 * 109.47332 * 185.32063 * 8 7 6 39 39 H 1.09010 * 109.47044 * 305.31757 * 8 7 6 40 40 H 1.08006 * 119.95613 * 359.97438 * 10 9 8 41 41 H 1.08004 * 120.03746 * 180.27414 * 11 10 9 42 42 H 1.08999 * 109.47473 * 90.00062 * 14 13 12 43 43 H 1.09007 * 109.47128 * 210.00123 * 14 13 12 44 44 H 1.09005 * 109.47350 * 329.99787 * 14 13 12 45 45 H 1.09002 * 109.47102 * 210.00000 * 15 13 12 46 46 H 1.09005 * 109.46738 * 329.99959 * 15 13 12 47 47 H 0.97002 * 120.00027 * 179.97438 * 19 18 16 48 48 H 1.08000 * 120.03628 * 179.97438 * 24 12 11 49 49 H 1.07995 * 119.96557 * 179.97438 * 25 24 12 50 50 H 1.09003 * 109.46879 * 53.73946 * 28 26 7 51 51 H 1.08999 * 109.47426 * 173.74305 * 28 26 7 52 52 H 1.08998 * 109.47425 * 293.74365 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2487 5 6 3.5711 -0.7734 -1.2115 6 6 4.0230 -1.4744 0.0717 7 7 3.5106 -0.7427 1.2372 8 6 4.0387 -1.3065 2.4866 9 6 5.5302 -1.0984 2.5407 10 6 6.3826 -2.1017 2.1174 11 6 7.7499 -1.9122 2.1603 12 6 8.2690 -0.7163 2.6399 13 7 9.6513 -0.5233 2.6896 14 6 10.1970 0.7388 3.1952 15 6 10.5558 -1.5828 2.2362 16 6 10.8378 -1.4076 0.7662 17 1 10.3881 -0.5891 0.2239 18 6 11.6693 -2.2928 0.1135 19 7 11.9159 -2.1396 -1.1692 20 14 12.4467 -3.7090 1.0513 21 1 11.5514 -4.8922 0.9927 22 1 13.7564 -4.0484 0.4392 23 1 12.6503 -3.3120 2.4677 24 6 7.4100 0.2873 3.0696 25 6 6.0436 0.0935 3.0184 26 6 2.0423 -0.7226 1.2481 27 1 1.6651 -1.7453 1.2548 28 6 1.5517 0.0098 2.4986 29 1 -0.3634 -1.0277 0.0017 30 1 -0.3634 0.5153 0.8891 31 1 -0.3633 0.5123 -0.8909 32 1 1.7157 -0.1871 -2.1398 33 1 1.6443 -1.7388 -1.2695 34 1 3.9386 -1.3256 -2.0765 35 1 3.9687 0.2413 -1.2318 36 1 3.6365 -2.4936 0.0840 37 1 5.1121 -1.4987 0.1081 38 1 3.5713 -0.8084 3.3361 39 1 3.8190 -2.3735 2.5252 40 1 5.9783 -3.0331 1.7492 41 1 8.4149 -2.6945 1.8255 42 1 10.3526 0.6623 4.2713 43 1 11.1481 0.9460 2.7044 44 1 9.4965 1.5473 2.9859 45 1 11.4901 -1.5267 2.7947 46 1 10.0902 -2.5541 2.4035 47 1 12.5011 -2.7622 -1.6284 48 1 7.8103 1.2181 3.4435 49 1 5.3753 0.8732 3.3527 50 1 2.0176 0.9939 2.5495 51 1 0.4685 0.1225 2.4522 52 1 1.8195 -0.5652 3.3850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245555623.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:11 Heat of formation + Delta-G solvation = 11.142378 kcal Electronic energy + Delta-G solvation = -27046.600255 eV Core-core repulsion = 23623.715462 eV Total energy + Delta-G solvation = -3422.884794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90867 -40.01254 -37.48982 -35.30056 -34.59723 -33.98628 -31.99108 -31.48268 -30.10572 -28.93132 -27.58586 -26.80032 -25.83032 -24.09037 -22.96762 -22.34138 -22.14366 -20.88558 -20.47315 -19.08864 -18.14474 -16.94922 -16.69735 -16.55015 -16.25419 -15.82425 -15.49846 -15.41855 -15.17495 -15.04823 -14.77976 -14.42078 -14.33072 -14.28064 -13.92840 -13.64457 -13.37834 -13.24204 -13.14878 -13.07249 -12.92572 -12.69731 -12.54990 -12.48896 -12.43693 -12.41815 -12.03810 -11.90780 -11.77847 -11.74487 -11.51197 -11.41048 -11.06914 -10.98359 -10.83340 -10.36462 -9.66168 -9.15359 -8.34352 -7.90371 -6.39638 0.69652 0.83197 1.33058 1.33800 1.44575 2.29378 2.54013 2.88054 2.99475 3.31712 3.83014 3.87492 3.93205 4.04992 4.07891 4.22718 4.24947 4.38240 4.41877 4.45447 4.46323 4.56546 4.61527 4.67148 4.69259 4.70071 4.74205 4.78156 4.81390 4.85349 4.89945 4.96106 4.98616 5.04476 5.05691 5.08172 5.12422 5.16478 5.22509 5.29323 5.30745 5.37134 5.44824 5.51646 5.57915 5.59780 5.66130 5.91146 6.08998 6.19961 6.24758 6.36231 6.59327 6.69429 6.87219 7.25830 8.83159 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.003079 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.975470 B = 9090.287750 C = 9943.086349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 H 0.068 0.932 4 C -0.111 4.111 5 C -0.117 4.117 6 C 0.057 3.943 7 N -0.535 5.535 8 C 0.109 3.891 9 C -0.151 4.151 10 C -0.069 4.069 11 C -0.216 4.216 12 C 0.212 3.788 13 N -0.629 5.629 14 C 0.097 3.903 15 C 0.232 3.768 16 C -0.536 4.536 17 H 0.024 0.976 18 C 0.012 3.988 19 N -0.946 5.946 20 Si 0.946 3.054 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.243 1.243 24 C -0.216 4.216 25 C -0.048 4.048 26 C 0.085 3.915 27 H 0.034 0.966 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.028 0.972 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.034 0.966 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.028 0.972 47 H 0.268 0.732 48 H 0.132 0.868 49 H 0.139 0.861 50 H 0.060 0.940 51 H 0.078 0.922 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.570 3.305 8.656 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.071 4.071 7 N -0.259 5.259 8 C -0.017 4.017 9 C -0.154 4.154 10 C -0.088 4.088 11 C -0.239 4.239 12 C 0.108 3.892 13 N -0.337 5.337 14 C -0.046 4.046 15 C 0.109 3.891 16 C -0.575 4.575 17 H 0.042 0.958 18 C -0.186 4.186 19 N -0.586 5.586 20 Si 0.769 3.231 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.166 1.166 24 C -0.239 4.239 25 C -0.067 4.067 26 C -0.023 4.023 27 H 0.052 0.948 28 C -0.205 4.205 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.052 0.948 40 H 0.135 0.865 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.077 0.923 48 H 0.150 0.850 49 H 0.157 0.843 50 H 0.079 0.921 51 H 0.097 0.903 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.091 3.758 8.501 23.967 hybrid contribution 0.974 -1.567 -0.567 1.930 sum -21.117 2.191 7.934 22.664 Atomic orbital electron populations 1.21846 0.93507 1.02095 1.02560 1.21158 0.96136 0.99498 0.93282 0.91362 1.21626 0.94267 1.00654 0.98329 1.21559 0.96864 1.00775 0.96282 1.22018 0.99549 0.94645 0.90928 1.61968 1.08042 1.54257 1.01675 1.20914 0.90381 0.97452 0.92976 1.19494 0.95066 0.95045 1.05788 1.20806 0.91855 0.98802 0.97381 1.20748 0.96096 0.98073 1.08946 1.18175 0.83801 0.94101 0.93168 1.46686 1.02452 1.17045 1.67539 1.21630 0.99147 0.85289 0.98490 1.19329 0.89451 0.87542 0.92731 1.21663 1.28386 1.12603 0.94800 0.95805 1.25871 0.96520 1.00619 0.95599 1.70070 1.38424 1.39126 1.10974 0.85735 0.78202 0.79134 0.80051 1.19093 1.20496 1.16632 1.20815 0.93606 0.99185 1.10266 1.20830 0.93600 0.96291 0.95955 1.21696 0.86190 0.97823 0.96551 0.94822 1.21986 1.01809 1.00752 0.95916 0.92628 0.91334 0.92053 0.91079 0.92140 0.91721 0.92435 0.95347 0.92521 0.88244 0.94812 0.86476 0.88248 0.91948 0.92616 0.90874 0.94635 0.95392 0.92321 0.85016 0.84293 0.92122 0.90349 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.88 71.98 0.64 -1.12 16 2 C -0.08 -1.39 2.40 -10.74 -0.03 -1.41 16 3 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.11 -2.04 5.28 30.67 0.16 -1.87 16 5 C -0.12 -2.74 6.10 30.65 0.19 -2.55 16 6 C 0.06 1.48 5.21 86.33 0.45 1.93 16 7 N -0.53 -12.55 4.49 -875.63 -3.93 -16.48 16 8 C 0.11 2.55 4.81 85.56 0.41 2.97 16 9 C -0.15 -4.46 4.72 -19.84 -0.09 -4.55 16 10 C -0.07 -2.36 8.18 22.25 0.18 -2.18 16 11 C -0.22 -8.89 9.21 22.40 0.21 -8.68 16 12 C 0.21 8.57 6.55 38.21 0.25 8.82 16 13 N -0.63 -26.80 2.99 -726.53 -2.17 -28.97 16 14 C 0.10 3.31 10.19 127.77 1.30 4.61 16 15 C 0.23 11.17 3.98 85.63 0.34 11.51 16 16 C -0.54 -31.23 9.94 25.60 0.25 -30.97 16 17 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 18 C 0.01 0.69 5.47 84.65 0.46 1.16 16 19 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 20 Si 0.95 43.37 27.47 68.60 1.88 45.25 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 24 C -0.22 -7.23 9.21 22.40 0.21 -7.02 16 25 C -0.05 -1.40 9.71 22.25 0.22 -1.18 16 26 C 0.09 1.57 1.96 44.94 0.09 1.65 16 27 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 28 C -0.15 -2.16 8.40 71.98 0.60 -1.55 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.72 6.33 -2.39 -0.02 0.71 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.06 1.81 6.05 -2.39 -0.01 1.80 16 38 H 0.10 1.95 5.79 -2.38 -0.01 1.94 16 39 H 0.03 0.78 8.04 -2.38 -0.02 0.76 16 40 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.10 4.53 6.14 -2.91 -0.02 4.51 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 2.00 8.07 -2.38 -0.02 1.98 16 44 H 0.07 2.21 6.20 -2.38 -0.01 2.20 16 45 H 0.04 1.64 7.13 -2.39 -0.02 1.63 16 46 H 0.03 1.34 5.63 -2.38 -0.01 1.33 16 47 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 48 H 0.13 3.84 6.14 -2.91 -0.02 3.83 16 49 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.08 0.88 6.15 -2.39 -0.01 0.87 16 52 H 0.06 0.83 6.50 -2.39 -0.02 0.81 16 Total: -1.00 -67.61 390.05 2.74 -64.87 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.82 Total: 24.97 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 5.84 Total: -30.46 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -5.80 Total: -104.63 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Total: -67.61 2.74 -64.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245555623.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.009 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds