Wall clock time and date at job start Tue Mar 31 2020 11:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50326 * 2 1 4 4 C 1.53115 * 109.50833 * 120.07767 * 2 1 3 5 5 C 1.53115 * 109.16143 * 62.28452 * 4 2 1 6 6 C 1.53038 * 109.27714 * 57.65597 * 5 4 2 7 7 N 1.46849 * 109.52394 * 300.82415 * 6 5 4 8 8 C 1.46899 * 110.99800 * 185.83982 * 7 6 5 9 9 C 1.50698 * 109.47681 * 71.02473 * 8 7 6 10 10 C 1.38287 * 119.92421 * 269.72725 * 9 8 7 11 11 C 1.38108 * 120.07312 * 179.71865 * 10 9 8 12 12 C 1.38910 * 119.92318 * 0.55077 * 11 10 9 13 13 N 1.39671 * 120.07150 * 179.74189 * 12 11 10 14 14 C 1.46504 * 119.99899 * 179.97438 * 13 12 11 15 15 C 1.46499 * 120.00167 * 359.97438 * 13 12 11 16 16 C 1.50694 * 109.47723 * 89.99482 * 15 13 12 17 17 H 1.08009 * 119.99942 * 0.02562 * 16 15 13 18 18 C 1.37880 * 120.00483 * 179.97438 * 16 15 13 19 19 N 1.31511 * 119.99729 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00197 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47114 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46946 * 120.00067 * 20 18 16 23 23 H 1.48493 * 109.47041 * 240.00437 * 20 18 16 24 24 C 1.38913 * 119.85323 * 359.72121 * 12 11 10 25 25 C 1.38104 * 119.92446 * 0.02562 * 24 12 11 26 26 C 1.46923 * 111.22323 * 61.73920 * 7 6 5 27 27 H 1.09005 * 109.44922 * 58.26433 * 26 7 6 28 28 C 1.52991 * 109.52076 * 178.26175 * 26 7 6 29 29 H 1.09006 * 109.46577 * 299.99559 * 1 2 3 30 30 H 1.08991 * 109.47204 * 59.99877 * 1 2 3 31 31 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.52772 * 182.19650 * 4 2 1 33 33 H 1.09002 * 109.52377 * 302.32091 * 4 2 1 34 34 H 1.08996 * 109.50841 * 177.59770 * 5 4 2 35 35 H 1.09005 * 109.50415 * 297.68138 * 5 4 2 36 36 H 1.08998 * 109.46252 * 60.83967 * 6 5 4 37 37 H 1.09001 * 109.46231 * 180.81743 * 6 5 4 38 38 H 1.09004 * 109.46988 * 191.02289 * 8 7 6 39 39 H 1.09003 * 109.47218 * 311.01777 * 8 7 6 40 40 H 1.08006 * 119.96086 * 359.97438 * 10 9 8 41 41 H 1.07998 * 120.03555 * 180.27026 * 11 10 9 42 42 H 1.08994 * 109.46554 * 90.00851 * 14 13 12 43 43 H 1.09004 * 109.46837 * 210.00206 * 14 13 12 44 44 H 1.08996 * 109.47031 * 330.00653 * 14 13 12 45 45 H 1.09001 * 109.46892 * 209.99447 * 15 13 12 46 46 H 1.09002 * 109.47043 * 329.98923 * 15 13 12 47 47 H 0.96995 * 120.00145 * 180.02562 * 19 18 16 48 48 H 1.07994 * 120.03832 * 180.02562 * 24 12 11 49 49 H 1.07993 * 119.96208 * 180.02562 * 25 24 12 50 50 H 1.09000 * 109.47619 * 171.74028 * 28 26 7 51 51 H 1.09000 * 109.47293 * 291.74264 * 28 26 7 52 52 H 1.09006 * 109.47292 * 51.73906 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7233 1.2489 5 6 1.5751 -2.1813 1.2115 6 6 2.0847 -2.8419 -0.0714 7 7 1.5676 -2.1138 -1.2371 8 6 1.9223 -2.8004 -2.4864 9 6 1.1199 -4.0703 -2.6072 10 6 1.6185 -5.2530 -2.0924 11 6 0.8832 -6.4174 -2.1962 12 6 -0.3535 -6.4019 -2.8287 13 7 -1.0973 -7.5788 -2.9402 14 6 -2.4016 -7.5605 -3.6070 15 6 -0.5733 -8.8314 -2.3902 16 6 -1.0243 -8.9799 -0.9601 17 1 -1.6402 -8.2175 -0.5061 18 6 -0.6517 -10.0894 -0.2312 19 7 0.0978 -11.0180 -0.7841 20 14 -1.2102 -10.2730 1.5418 21 1 -2.0373 -9.1005 1.9242 22 1 -2.0155 -11.5128 1.6812 23 1 -0.0223 -10.3519 2.4293 24 6 -0.8489 -5.2133 -3.3497 25 6 -0.1107 -4.0514 -3.2378 26 6 2.0409 -0.7230 -1.2483 27 1 3.1309 -0.7105 -1.2547 28 6 1.5159 -0.0144 -2.4985 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1306 -0.6896 1.2692 33 1 1.6452 -0.2361 2.1399 34 1 1.9717 -2.7125 2.0767 35 1 0.4858 -2.2157 1.2313 36 1 3.1744 -2.8196 -0.0833 37 1 1.7422 -3.8761 -0.1081 38 1 1.7029 -2.1502 -3.3333 39 1 2.9853 -3.0415 -2.4793 40 1 2.5823 -5.2652 -1.6050 41 1 1.2712 -7.3398 -1.7901 42 1 -2.2687 -7.7595 -4.6704 43 1 -3.0431 -8.3266 -3.1715 44 1 -2.8633 -6.5820 -3.4754 45 1 -0.9464 -9.6703 -2.9778 46 1 0.5160 -8.8173 -2.4282 47 1 0.3597 -11.7987 -0.2715 48 1 -1.8101 -5.1977 -3.8416 49 1 -0.4954 -3.1269 -3.6422 50 1 1.7419 1.0500 -2.4348 51 1 1.9947 -0.4352 -3.3827 52 1 0.4370 -0.1532 -2.5688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245555626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:15 Heat of formation + Delta-G solvation = 24.693048 kcal Electronic energy + Delta-G solvation = -27270.252000 eV Core-core repulsion = 23847.954807 eV Total energy + Delta-G solvation = -3422.297193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92434 -38.72073 -35.96409 -34.04267 -32.92243 -32.63428 -30.40755 -29.96592 -28.02397 -27.75169 -26.47550 -25.89216 -24.37343 -22.96557 -21.83333 -21.48979 -21.17349 -19.49539 -18.53747 -16.64349 -16.44409 -16.04813 -15.50119 -15.17495 -15.03766 -14.65461 -14.39177 -14.08980 -13.79482 -13.65821 -13.47337 -13.21813 -12.90175 -12.81645 -12.52750 -12.26980 -12.21375 -12.15183 -11.76777 -11.71980 -11.55339 -11.40375 -11.36890 -11.24131 -10.97617 -10.90050 -10.69569 -10.65123 -10.54681 -10.25575 -10.19855 -10.08782 -9.83048 -9.71594 -8.78571 -8.50503 -8.22837 -8.10771 -6.43297 -6.00102 -4.16720 2.15242 2.27673 3.25444 3.33603 3.38949 3.97792 4.18754 4.42213 4.59701 4.67350 4.72859 4.83803 5.04646 5.21017 5.22071 5.27882 5.31354 5.38664 5.44744 5.51120 5.57695 5.60108 5.63839 5.66152 5.72996 5.78432 5.84697 5.86369 5.91338 5.96563 6.03490 6.04867 6.07675 6.11068 6.17693 6.21168 6.30659 6.32929 6.43997 6.47457 6.52823 6.68960 6.97745 7.06354 7.19407 7.24489 7.28345 7.31888 7.42139 7.65092 7.82080 8.16860 8.29496 8.52347 8.93074 9.50196 10.96083 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.003411 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.598919 B = 8205.709207 C = 9315.820321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 H 0.066 0.934 4 C -0.116 4.116 5 C -0.118 4.118 6 C 0.054 3.946 7 N -0.522 5.522 8 C 0.105 3.895 9 C -0.162 4.162 10 C -0.068 4.068 11 C -0.187 4.187 12 C 0.240 3.760 13 N -0.616 5.616 14 C 0.099 3.901 15 C 0.249 3.751 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.222 4.222 25 C -0.053 4.053 26 C 0.085 3.915 27 H 0.034 0.966 28 C -0.149 4.149 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.030 0.970 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.035 0.965 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.029 0.971 46 H 0.035 0.965 47 H 0.263 0.737 48 H 0.112 0.888 49 H 0.107 0.893 50 H 0.055 0.945 51 H 0.055 0.945 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 20.474 -2.081 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.074 4.074 7 N -0.248 5.248 8 C -0.022 4.022 9 C -0.165 4.165 10 C -0.088 4.088 11 C -0.210 4.210 12 C 0.133 3.867 13 N -0.322 5.322 14 C -0.045 4.045 15 C 0.129 3.871 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.245 4.245 25 C -0.072 4.072 26 C -0.023 4.023 27 H 0.051 0.949 28 C -0.206 4.206 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.124 0.876 41 H 0.148 0.852 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.053 0.947 47 H 0.073 0.927 48 H 0.130 0.870 49 H 0.125 0.875 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.716 20.090 -2.031 20.374 hybrid contribution 0.598 -0.360 1.064 1.273 sum 3.314 19.730 -0.967 20.029 Atomic orbital electron populations 1.21802 0.94440 1.03176 1.00387 1.21156 0.97015 0.97957 0.93930 0.91605 1.21624 0.99983 0.96225 0.97562 1.21613 1.02154 0.95027 0.96806 1.22137 0.96307 0.99058 0.89898 1.61989 1.59868 1.00728 1.02165 1.20920 0.95941 0.93358 0.91969 1.19125 0.97314 0.93630 1.06421 1.20652 0.98387 0.92049 0.97698 1.20834 0.95234 0.99231 1.05672 1.17935 0.90660 0.86331 0.91731 1.47078 1.17967 1.07646 1.59543 1.21461 0.85823 1.01558 0.95681 1.19271 0.95124 0.79392 0.93277 1.21630 1.32380 1.05640 0.97195 0.92199 1.24962 0.95006 0.95592 0.98531 1.69938 1.36367 1.10122 1.37027 0.86480 0.78574 0.78023 0.84653 1.19697 1.20960 1.20857 1.20554 1.01674 0.92276 1.10011 1.20443 0.93314 0.96345 0.97083 1.21593 0.96287 0.89145 0.95294 0.94853 1.21970 1.02543 0.99400 0.96715 0.93887 0.92980 0.90773 0.92657 0.92095 0.91894 0.90740 0.95636 0.89596 0.90338 0.95130 0.87619 0.85243 0.94690 0.91529 0.92688 0.95274 0.94683 0.92730 0.87023 0.87498 0.92561 0.92648 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.38 37.16 0.31 -1.08 16 2 C -0.08 -0.78 2.73 -90.54 -0.25 -1.03 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -1.13 5.51 -26.61 -0.15 -1.27 16 5 C -0.12 -1.33 5.74 -26.65 -0.15 -1.49 16 6 C 0.05 0.68 5.24 -3.83 -0.02 0.66 16 7 N -0.52 -6.38 3.73 -228.06 -0.85 -7.23 16 8 C 0.10 1.34 4.92 -4.98 -0.02 1.31 16 9 C -0.16 -2.51 5.03 -104.59 -0.53 -3.04 16 10 C -0.07 -1.18 8.06 -39.61 -0.32 -1.49 16 11 C -0.19 -3.80 9.21 -39.38 -0.36 -4.16 16 12 C 0.24 4.90 6.55 -83.79 -0.55 4.35 16 13 N -0.62 -13.31 2.99 -181.00 -0.54 -13.85 16 14 C 0.10 1.76 10.19 59.85 0.61 2.37 16 15 C 0.25 6.28 4.91 -5.20 -0.03 6.26 16 16 C -0.53 -14.51 9.39 -34.44 -0.32 -14.84 16 17 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -25.71 13.29 55.43 0.74 -24.97 16 20 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.22 -3.91 9.21 -39.38 -0.36 -4.27 16 25 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 26 C 0.09 0.88 2.14 -67.69 -0.14 0.73 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 C -0.15 -1.34 7.91 37.15 0.29 -1.05 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.49 6.61 -51.93 -0.34 0.14 16 31 H 0.07 0.88 6.01 -51.93 -0.31 0.57 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.91 6.58 -51.93 -0.34 0.57 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 1.26 5.89 -51.93 -0.31 0.96 16 38 H 0.08 0.91 5.55 -51.93 -0.29 0.62 16 39 H 0.03 0.39 8.01 -51.93 -0.42 -0.03 16 40 H 0.11 1.65 7.87 -52.48 -0.41 1.23 16 41 H 0.13 2.91 6.14 -52.49 -0.32 2.59 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 44 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 45 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 46 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.11 1.79 6.14 -52.49 -0.32 1.46 16 49 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 50 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 51 H 0.05 0.49 6.51 -51.93 -0.34 0.15 16 52 H 0.07 0.67 6.90 -51.93 -0.36 0.31 16 LS Contribution 389.31 15.07 5.87 5.87 Total: -1.00 -28.33 389.31 -11.29 -39.62 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -9.01 Total: 1.88 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -2.47 Total: -17.66 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.66 Total: -46.06 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.33 -11.29 -39.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245555626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.313 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds