Wall clock time and date at job start Tue Mar 31 2020 11:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50326 * 2 1 4 4 C 1.53115 * 109.50833 * 120.07767 * 2 1 3 5 5 C 1.53115 * 109.16143 * 62.28452 * 4 2 1 6 6 C 1.53038 * 109.27714 * 57.65597 * 5 4 2 7 7 N 1.46849 * 109.52394 * 300.82415 * 6 5 4 8 8 C 1.46899 * 110.99800 * 185.83982 * 7 6 5 9 9 C 1.50698 * 109.47681 * 71.02473 * 8 7 6 10 10 C 1.38287 * 119.92421 * 269.72725 * 9 8 7 11 11 C 1.38108 * 120.07312 * 179.71865 * 10 9 8 12 12 C 1.38910 * 119.92318 * 0.55077 * 11 10 9 13 13 N 1.39671 * 120.07150 * 179.74189 * 12 11 10 14 14 C 1.46504 * 119.99899 * 179.97438 * 13 12 11 15 15 C 1.46499 * 120.00167 * 359.97438 * 13 12 11 16 16 C 1.50694 * 109.47723 * 89.99482 * 15 13 12 17 17 H 1.08009 * 119.99942 * 0.02562 * 16 15 13 18 18 C 1.37880 * 120.00483 * 179.97438 * 16 15 13 19 19 N 1.31511 * 119.99729 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00197 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47114 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46946 * 120.00067 * 20 18 16 23 23 H 1.48493 * 109.47041 * 240.00437 * 20 18 16 24 24 C 1.38913 * 119.85323 * 359.72121 * 12 11 10 25 25 C 1.38104 * 119.92446 * 0.02562 * 24 12 11 26 26 C 1.46923 * 111.22323 * 61.73920 * 7 6 5 27 27 H 1.09005 * 109.44922 * 58.26433 * 26 7 6 28 28 C 1.52991 * 109.52076 * 178.26175 * 26 7 6 29 29 H 1.09006 * 109.46577 * 299.99559 * 1 2 3 30 30 H 1.08991 * 109.47204 * 59.99877 * 1 2 3 31 31 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.52772 * 182.19650 * 4 2 1 33 33 H 1.09002 * 109.52377 * 302.32091 * 4 2 1 34 34 H 1.08996 * 109.50841 * 177.59770 * 5 4 2 35 35 H 1.09005 * 109.50415 * 297.68138 * 5 4 2 36 36 H 1.08998 * 109.46252 * 60.83967 * 6 5 4 37 37 H 1.09001 * 109.46231 * 180.81743 * 6 5 4 38 38 H 1.09004 * 109.46988 * 191.02289 * 8 7 6 39 39 H 1.09003 * 109.47218 * 311.01777 * 8 7 6 40 40 H 1.08006 * 119.96086 * 359.97438 * 10 9 8 41 41 H 1.07998 * 120.03555 * 180.27026 * 11 10 9 42 42 H 1.08994 * 109.46554 * 90.00851 * 14 13 12 43 43 H 1.09004 * 109.46837 * 210.00206 * 14 13 12 44 44 H 1.08996 * 109.47031 * 330.00653 * 14 13 12 45 45 H 1.09001 * 109.46892 * 209.99447 * 15 13 12 46 46 H 1.09002 * 109.47043 * 329.98923 * 15 13 12 47 47 H 0.96995 * 120.00145 * 180.02562 * 19 18 16 48 48 H 1.07994 * 120.03832 * 180.02562 * 24 12 11 49 49 H 1.07993 * 119.96208 * 180.02562 * 25 24 12 50 50 H 1.09000 * 109.47619 * 171.74028 * 28 26 7 51 51 H 1.09000 * 109.47293 * 291.74264 * 28 26 7 52 52 H 1.09006 * 109.47292 * 51.73906 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7233 1.2489 5 6 1.5751 -2.1813 1.2115 6 6 2.0847 -2.8419 -0.0714 7 7 1.5676 -2.1138 -1.2371 8 6 1.9223 -2.8004 -2.4864 9 6 1.1199 -4.0703 -2.6072 10 6 1.6185 -5.2530 -2.0924 11 6 0.8832 -6.4174 -2.1962 12 6 -0.3535 -6.4019 -2.8287 13 7 -1.0973 -7.5788 -2.9402 14 6 -2.4016 -7.5605 -3.6070 15 6 -0.5733 -8.8314 -2.3902 16 6 -1.0243 -8.9799 -0.9601 17 1 -1.6402 -8.2175 -0.5061 18 6 -0.6517 -10.0894 -0.2312 19 7 0.0978 -11.0180 -0.7841 20 14 -1.2102 -10.2730 1.5418 21 1 -2.0373 -9.1005 1.9242 22 1 -2.0155 -11.5128 1.6812 23 1 -0.0223 -10.3519 2.4293 24 6 -0.8489 -5.2133 -3.3497 25 6 -0.1107 -4.0514 -3.2378 26 6 2.0409 -0.7230 -1.2483 27 1 3.1309 -0.7105 -1.2547 28 6 1.5159 -0.0144 -2.4985 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1306 -0.6896 1.2692 33 1 1.6452 -0.2361 2.1399 34 1 1.9717 -2.7125 2.0767 35 1 0.4858 -2.2157 1.2313 36 1 3.1744 -2.8196 -0.0833 37 1 1.7422 -3.8761 -0.1081 38 1 1.7029 -2.1502 -3.3333 39 1 2.9853 -3.0415 -2.4793 40 1 2.5823 -5.2652 -1.6050 41 1 1.2712 -7.3398 -1.7901 42 1 -2.2687 -7.7595 -4.6704 43 1 -3.0431 -8.3266 -3.1715 44 1 -2.8633 -6.5820 -3.4754 45 1 -0.9464 -9.6703 -2.9778 46 1 0.5160 -8.8173 -2.4282 47 1 0.3597 -11.7987 -0.2715 48 1 -1.8101 -5.1977 -3.8416 49 1 -0.4954 -3.1269 -3.6422 50 1 1.7419 1.0500 -2.4348 51 1 1.9947 -0.4352 -3.3827 52 1 0.4370 -0.1532 -2.5688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245555626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:14 Heat of formation + Delta-G solvation = 11.718360 kcal Electronic energy + Delta-G solvation = -27270.814625 eV Core-core repulsion = 23847.954807 eV Total energy + Delta-G solvation = -3422.859817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94075 -40.04026 -37.43212 -35.24456 -34.57321 -33.74689 -31.86587 -31.28085 -29.62516 -28.83157 -27.58607 -26.90869 -25.95917 -24.37645 -23.11846 -22.75388 -22.19878 -20.93106 -19.36878 -18.64220 -18.09052 -16.96676 -16.92667 -16.34746 -16.29480 -15.95511 -15.54286 -15.43077 -15.28431 -14.80952 -14.49384 -14.39506 -14.31430 -14.22997 -14.03283 -13.40674 -13.21391 -13.16134 -13.04940 -13.00033 -12.90016 -12.70730 -12.58225 -12.54695 -12.45431 -12.30683 -12.16161 -12.00008 -11.72544 -11.60826 -11.42961 -11.32902 -11.02239 -10.93878 -10.65321 -10.35023 -9.62960 -9.08667 -8.36353 -7.77921 -6.38062 0.72873 0.87584 1.34838 1.36447 1.48911 2.33703 2.64756 2.91879 3.05328 3.36676 3.84997 3.90785 3.99615 4.06856 4.11799 4.27103 4.30315 4.38508 4.43457 4.46596 4.52458 4.63186 4.65621 4.68796 4.71528 4.72682 4.79833 4.87589 4.89345 4.92963 4.97918 5.01593 5.02796 5.08802 5.13588 5.18608 5.21260 5.21409 5.29175 5.34729 5.35421 5.40939 5.54061 5.60246 5.69495 5.70731 5.72114 5.95126 6.07106 6.21399 6.28735 6.39007 6.51082 6.83245 6.95664 7.33953 8.82704 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.003411 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.598919 B = 8205.709207 C = 9315.820321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 H 0.084 0.916 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.055 3.945 7 N -0.528 5.528 8 C 0.108 3.892 9 C -0.148 4.148 10 C -0.068 4.068 11 C -0.215 4.215 12 C 0.212 3.788 13 N -0.633 5.633 14 C 0.099 3.901 15 C 0.267 3.733 16 C -0.540 4.540 17 H 0.048 0.952 18 C 0.013 3.987 19 N -0.926 5.926 20 Si 0.961 3.039 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.277 1.277 24 C -0.217 4.217 25 C -0.048 4.048 26 C 0.084 3.916 27 H 0.034 0.966 28 C -0.146 4.146 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.028 0.972 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.033 0.967 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.009 0.991 46 H 0.010 0.990 47 H 0.267 0.733 48 H 0.132 0.868 49 H 0.141 0.859 50 H 0.072 0.928 51 H 0.058 0.942 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 23.876 -2.010 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 H 0.102 0.898 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.073 4.073 7 N -0.253 5.253 8 C -0.019 4.019 9 C -0.151 4.151 10 C -0.087 4.087 11 C -0.238 4.238 12 C 0.107 3.893 13 N -0.341 5.341 14 C -0.044 4.044 15 C 0.146 3.854 16 C -0.579 4.579 17 H 0.066 0.934 18 C -0.186 4.186 19 N -0.566 5.566 20 Si 0.786 3.214 21 H -0.196 1.196 22 H -0.199 1.199 23 H -0.203 1.203 24 C -0.240 4.240 25 C -0.067 4.067 26 C -0.024 4.024 27 H 0.052 0.948 28 C -0.203 4.203 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.051 0.949 40 H 0.133 0.867 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.076 0.924 48 H 0.150 0.850 49 H 0.158 0.842 50 H 0.091 0.909 51 H 0.077 0.923 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.411 23.530 -1.974 23.736 hybrid contribution 0.759 -1.300 1.021 1.819 sum 3.169 22.230 -0.953 22.475 Atomic orbital electron populations 1.21743 0.94732 1.01813 1.01082 1.21187 0.96677 0.98737 0.93304 0.89763 1.21607 1.00296 0.94855 0.98283 1.21583 1.01300 0.96412 0.96154 1.22067 0.96407 0.97891 0.90969 1.61955 1.60153 1.01718 1.01479 1.20919 0.95489 0.92314 0.93156 1.19475 0.97321 0.94074 1.04240 1.20769 0.98559 0.91799 0.97614 1.20719 0.96514 0.99014 1.07580 1.18196 0.90890 0.86947 0.93267 1.46947 1.19515 1.06811 1.60822 1.21590 0.84118 1.02525 0.96193 1.18751 0.93538 0.80820 0.92318 1.21805 1.32225 1.05445 0.98402 0.93397 1.25771 0.94972 0.95219 1.02672 1.70040 1.37264 1.10651 1.38691 0.85465 0.78272 0.78155 0.79554 1.19576 1.19850 1.20252 1.20800 1.02514 0.91510 1.09130 1.20831 0.92877 0.96918 0.96092 1.21698 0.96380 0.87822 0.96527 0.94809 1.21950 1.02091 1.00312 0.95946 0.93222 0.92309 0.93077 0.92150 0.91121 0.91765 0.92004 0.95355 0.92316 0.88279 0.94909 0.86716 0.88931 0.92922 0.92599 0.90399 0.97321 0.97234 0.92391 0.85043 0.84169 0.90888 0.92297 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.38 71.98 0.60 -1.76 16 2 C -0.08 -1.29 2.73 -10.74 -0.03 -1.32 16 3 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.11 -1.92 5.51 30.67 0.17 -1.75 16 5 C -0.12 -2.52 5.74 30.65 0.18 -2.35 16 6 C 0.05 1.34 5.24 86.33 0.45 1.79 16 7 N -0.53 -11.81 3.73 -875.46 -3.26 -15.07 16 8 C 0.11 2.49 4.92 85.56 0.42 2.91 16 9 C -0.15 -4.38 5.03 -19.84 -0.10 -4.48 16 10 C -0.07 -2.39 8.06 22.25 0.18 -2.21 16 11 C -0.22 -9.25 9.21 22.40 0.21 -9.05 16 12 C 0.21 8.84 6.55 38.22 0.25 9.09 16 13 N -0.63 -28.35 2.99 -726.57 -2.17 -30.53 16 14 C 0.10 3.51 10.19 127.77 1.30 4.81 16 15 C 0.27 14.34 4.91 85.63 0.42 14.76 16 16 C -0.54 -30.92 9.39 25.60 0.24 -30.68 16 17 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 18 C 0.01 0.73 5.46 84.66 0.46 1.19 16 19 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 20 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 C -0.22 -7.33 9.21 22.40 0.21 -7.12 16 25 C -0.05 -1.40 9.69 22.25 0.22 -1.19 16 26 C 0.08 1.47 2.14 44.92 0.10 1.57 16 27 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 28 C -0.15 -2.08 7.91 71.98 0.57 -1.51 16 29 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.93 6.61 -2.39 -0.02 0.91 16 31 H 0.05 1.13 6.01 -2.39 -0.01 1.12 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.49 6.58 -2.38 -0.02 1.48 16 36 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 1.75 5.89 -2.39 -0.01 1.73 16 38 H 0.10 1.92 5.55 -2.39 -0.01 1.91 16 39 H 0.03 0.76 8.01 -2.39 -0.02 0.74 16 40 H 0.11 3.69 7.87 -2.91 -0.02 3.67 16 41 H 0.09 4.59 6.14 -2.91 -0.02 4.57 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 44 H 0.08 2.36 6.20 -2.39 -0.01 2.35 16 45 H 0.01 0.49 8.07 -2.39 -0.02 0.48 16 46 H 0.01 0.56 6.20 -2.39 -0.01 0.55 16 47 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 48 H 0.13 3.87 6.14 -2.91 -0.02 3.85 16 49 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 50 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 51 H 0.06 0.80 6.51 -2.39 -0.02 0.79 16 52 H 0.06 1.01 6.90 -2.38 -0.02 0.99 16 Total: -1.00 -63.52 389.31 3.59 -59.93 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.88 Total: 20.92 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 5.84 Total: -27.30 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -5.15 Total: -100.32 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.52 3.59 -59.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245555626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.649 kcal (2) G-P(sol) polarization free energy of solvation -63.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds