Wall clock time and date at job start Tue Mar 31 2020 11:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.52586 * 2 1 4 4 C 1.53119 * 109.52065 * 239.87266 * 2 1 3 5 5 C 1.53037 * 109.27713 * 182.44451 * 4 2 1 6 6 N 1.46853 * 109.52207 * 59.18173 * 5 4 2 7 7 C 1.46902 * 110.99884 * 174.16376 * 6 5 4 8 8 C 1.50696 * 109.47499 * 66.04086 * 7 6 5 9 9 C 1.38293 * 119.92382 * 89.99746 * 8 7 6 10 10 C 1.38098 * 120.07389 * 180.02562 * 9 8 7 11 11 C 1.38912 * 119.92737 * 0.02562 * 10 9 8 12 12 N 1.39671 * 120.07669 * 179.97438 * 11 10 9 13 13 C 1.46507 * 120.00006 * 359.97438 * 12 11 10 14 14 C 1.46500 * 120.00341 * 179.97438 * 12 11 10 15 15 C 1.50706 * 109.47299 * 89.99360 * 14 12 11 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 12 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 C 1.38910 * 119.85058 * 0.24846 * 11 10 9 24 24 C 1.38111 * 119.92464 * 359.49546 * 23 11 10 25 25 C 1.46851 * 111.19663 * 298.25608 * 6 5 4 26 26 C 1.53038 * 109.52393 * 61.74331 * 25 6 5 27 27 H 1.08999 * 109.49911 * 60.75790 * 26 25 6 28 28 C 1.52993 * 109.53668 * 180.85798 * 26 25 6 29 29 H 1.08995 * 109.47694 * 180.12146 * 1 2 3 30 30 H 1.09002 * 109.46911 * 300.13123 * 1 2 3 31 31 H 1.09007 * 109.46510 * 60.12559 * 1 2 3 32 32 H 1.08997 * 109.50284 * 62.50585 * 4 2 1 33 33 H 1.09007 * 109.53714 * 302.40428 * 4 2 1 34 34 H 1.09002 * 109.46214 * 299.16394 * 5 4 2 35 35 H 1.09000 * 109.46315 * 179.19087 * 5 4 2 36 36 H 1.09002 * 109.46600 * 306.03865 * 7 6 5 37 37 H 1.08999 * 109.47137 * 186.04532 * 7 6 5 38 38 H 1.08003 * 119.95975 * 0.05093 * 9 8 7 39 39 H 1.08001 * 120.04120 * 179.97438 * 10 9 8 40 40 H 1.08996 * 109.47100 * 270.00296 * 13 12 11 41 41 H 1.09001 * 109.46499 * 30.00717 * 13 12 11 42 42 H 1.09000 * 109.46902 * 150.00005 * 13 12 11 43 43 H 1.09004 * 109.47078 * 330.00122 * 14 12 11 44 44 H 1.08993 * 109.47364 * 209.99893 * 14 12 11 45 45 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 46 46 H 1.08003 * 120.04135 * 179.72655 * 23 11 10 47 47 H 1.07993 * 119.96242 * 180.25241 * 24 23 11 48 48 H 1.08997 * 109.46293 * 181.76281 * 25 6 5 49 49 H 1.08999 * 109.45980 * 301.72923 * 25 6 5 50 50 H 1.09001 * 109.47473 * 179.82124 * 28 26 25 51 51 H 1.08992 * 109.47410 * 299.82514 * 28 26 25 52 52 H 1.09001 * 109.46932 * 59.82438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 -1.2482 5 6 3.5708 -0.7746 -1.2121 6 7 4.0101 -1.4791 -0.0008 7 6 5.4670 -1.6681 -0.0008 8 6 6.1475 -0.3271 0.0976 9 6 6.4483 0.2045 1.3383 10 6 7.0714 1.4333 1.4321 11 6 7.3955 2.1358 0.2784 12 7 8.0253 3.3792 0.3696 13 6 8.3443 3.9441 1.6832 14 6 8.3669 4.1184 -0.8482 15 6 7.2158 5.0118 -1.2331 16 1 6.3197 5.0275 -0.6306 17 6 7.3068 5.8089 -2.3544 18 7 8.4002 5.7936 -3.0851 19 14 5.8803 6.9167 -2.8312 20 1 6.2289 7.6704 -4.0623 21 1 4.6733 6.0888 -3.0826 22 1 5.6047 7.8713 -1.7276 23 6 7.0868 1.6016 -0.9661 24 6 6.4684 0.3698 -1.0530 25 6 3.5707 -0.7760 1.2113 26 6 2.0416 -0.7258 1.2475 27 1 1.6446 -1.7407 1.2664 28 6 1.5839 0.0253 2.4993 29 1 -0.3634 -1.0276 0.0022 30 1 -0.3633 0.5159 0.8888 31 1 -0.3632 0.5119 -0.8912 32 1 1.7162 -0.1878 -2.1394 33 1 1.6446 -1.7393 -1.2692 34 1 3.9675 0.2406 -1.2058 35 1 3.9378 -1.3024 -2.0923 36 1 5.7692 -2.1620 -0.9243 37 1 5.7535 -2.2843 0.8514 38 1 6.1960 -0.3423 2.2349 39 1 7.3057 1.8481 2.4013 40 1 7.5062 4.5470 2.0327 41 1 8.5306 3.1360 2.3906 42 1 9.2335 4.5695 1.6035 43 1 8.5667 3.4148 -1.6563 44 1 9.2537 4.7259 -0.6677 45 1 9.1411 5.2186 -2.8374 46 1 7.3334 2.1472 -1.8650 47 1 6.2318 -0.0480 -2.0203 48 1 3.9377 -1.3047 2.0910 49 1 3.9674 0.2392 1.2061 50 1 0.4947 0.0632 2.5224 51 1 1.9483 -0.4917 3.3868 52 1 1.9824 1.0397 2.4804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245794258.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:31 Heat of formation + Delta-G solvation = 12.886059 kcal Electronic energy + Delta-G solvation = -27494.785022 eV Core-core repulsion = 24071.975840 eV Total energy + Delta-G solvation = -3422.809182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.95339 -38.67482 -36.33407 -34.60241 -32.93396 -32.22287 -30.55601 -30.24182 -28.14887 -27.60851 -26.69326 -25.30003 -23.96856 -22.67567 -22.36933 -21.43831 -21.04485 -19.83802 -19.46533 -17.14904 -16.60029 -15.56641 -15.47505 -15.02606 -14.85458 -14.62193 -14.44622 -14.11036 -14.01650 -13.80513 -13.59812 -13.26222 -13.05312 -12.91815 -12.53644 -12.33175 -12.15910 -12.08148 -11.95128 -11.78857 -11.73667 -11.52262 -11.37512 -11.22890 -11.19996 -10.93612 -10.86497 -10.69633 -10.55115 -10.19056 -10.16654 -10.12155 -10.03664 -9.54483 -8.64079 -8.49559 -8.37164 -8.17673 -6.65206 -6.30957 -4.22482 1.98272 2.11031 3.37472 3.38793 3.57620 4.00725 4.06095 4.43361 4.47709 4.67218 4.75442 4.79554 5.04288 5.23390 5.24929 5.28753 5.39485 5.42232 5.45687 5.47789 5.53021 5.55175 5.59390 5.65535 5.67014 5.75133 5.80765 5.87965 5.93404 5.94159 5.94692 5.99180 6.02398 6.10104 6.16367 6.17631 6.21378 6.25181 6.27072 6.29959 6.49392 6.50368 6.74722 6.81166 6.96200 7.02380 7.11048 7.21077 7.29034 7.46799 7.92756 7.98069 8.30035 8.45539 8.70479 9.47940 10.87829 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.003916 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.663748 B = 7147.964570 C = 8213.589640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.110 4.110 5 C 0.050 3.950 6 N -0.530 5.530 7 C 0.106 3.894 8 C -0.207 4.207 9 C -0.061 4.061 10 C -0.221 4.221 11 C 0.242 3.758 12 N -0.612 5.612 13 C 0.101 3.899 14 C 0.240 3.760 15 C -0.610 4.610 16 H 0.052 0.948 17 C 0.021 3.979 18 N -0.908 5.908 19 Si 1.068 2.932 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.288 1.288 23 C -0.188 4.188 24 C -0.061 4.061 25 C 0.058 3.942 26 C -0.082 4.082 27 H 0.073 0.927 28 C -0.148 4.148 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.019 0.981 45 H 0.267 0.733 46 H 0.128 0.872 47 H 0.109 0.891 48 H 0.067 0.933 49 H 0.045 0.955 50 H 0.057 0.943 51 H 0.052 0.948 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 -14.137 8.688 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.148 4.148 5 C -0.078 4.078 6 N -0.252 5.252 7 C -0.021 4.021 8 C -0.211 4.211 9 C -0.080 4.080 10 C -0.244 4.244 11 C 0.135 3.865 12 N -0.318 5.318 13 C -0.043 4.043 14 C 0.120 3.880 15 C -0.649 4.649 16 H 0.071 0.929 17 C -0.183 4.183 18 N -0.544 5.544 19 Si 0.896 3.104 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.214 1.214 23 C -0.210 4.210 24 C -0.081 4.081 25 C -0.070 4.070 26 C -0.101 4.101 27 H 0.092 0.908 28 C -0.206 4.206 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.037 0.963 45 H 0.077 0.923 46 H 0.146 0.854 47 H 0.127 0.873 48 H 0.085 0.915 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.072 0.928 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.730 -13.268 7.564 18.666 hybrid contribution 0.943 -0.063 1.187 1.517 sum -9.788 -13.332 8.751 18.712 Atomic orbital electron populations 1.21856 0.95440 1.01509 1.01511 1.21214 0.95320 0.99553 0.94802 0.91401 1.21629 0.95094 1.00698 0.97335 1.22116 0.95177 0.97858 0.92639 1.62399 1.11579 1.48994 1.02226 1.20975 0.85697 0.93189 1.02227 1.20041 1.07997 0.99681 0.93379 1.20540 0.96672 0.94634 0.96195 1.20555 1.09354 0.97778 0.96695 1.17922 0.89955 0.85115 0.93535 1.46864 1.61401 1.16776 1.06722 1.21457 1.00024 0.97701 0.85088 1.19353 0.96055 0.90940 0.81671 1.22362 1.02546 1.26569 1.13451 0.92949 1.25814 1.01654 0.97815 0.93035 1.70830 1.05108 1.38708 1.39780 0.83545 0.74507 0.75971 0.76381 1.20591 1.21328 1.21419 1.20843 1.05933 0.97321 0.96917 1.20681 0.96383 0.93953 0.97079 1.22137 0.94482 0.97805 0.92538 1.21170 0.95059 0.99549 0.94283 0.90839 1.21847 1.01072 1.00495 0.97179 0.92860 0.92612 0.92922 0.91800 0.91522 0.93681 0.91223 0.90777 0.90835 0.87477 0.86930 0.94004 0.92677 0.92127 0.95749 0.96298 0.92262 0.85447 0.87268 0.91452 0.93654 0.92415 0.92845 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.90 37.16 0.33 -1.03 16 2 C -0.09 -1.00 2.29 -90.49 -0.21 -1.20 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.11 -1.23 5.38 -26.65 -0.14 -1.37 16 5 C 0.05 0.64 4.82 -3.83 -0.02 0.62 16 6 N -0.53 -6.59 4.86 -236.11 -1.15 -7.74 16 7 C 0.11 1.34 5.55 -4.98 -0.03 1.31 16 8 C -0.21 -3.12 4.05 -104.59 -0.42 -3.54 16 9 C -0.06 -0.93 8.00 -39.61 -0.32 -1.25 16 10 C -0.22 -3.82 9.21 -39.38 -0.36 -4.18 16 11 C 0.24 4.90 6.55 -83.79 -0.55 4.35 16 12 N -0.61 -13.20 2.99 -180.99 -0.54 -13.74 16 13 C 0.10 1.80 10.23 59.85 0.61 2.41 16 14 C 0.24 6.01 4.26 -5.19 -0.02 5.98 16 15 C -0.61 -16.90 9.39 -34.44 -0.32 -17.22 16 16 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 17 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 18 N -0.91 -26.76 13.65 55.43 0.76 -26.01 16 19 Si 1.07 25.02 29.90 -169.99 -5.08 19.94 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.19 -3.80 9.20 -39.38 -0.36 -4.16 16 24 C -0.06 -1.04 8.10 -39.61 -0.32 -1.36 16 25 C 0.06 0.71 3.82 -3.83 -0.01 0.70 16 26 C -0.08 -0.88 2.38 -90.54 -0.22 -1.09 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 C -0.15 -1.43 8.90 37.15 0.33 -1.10 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.49 6.52 -51.93 -0.34 0.15 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.68 6.55 -51.93 -0.34 0.34 16 35 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 36 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 37 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.11 1.39 8.02 -52.48 -0.42 0.97 16 39 H 0.11 1.77 6.14 -52.49 -0.32 1.45 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.83 6.20 -51.93 -0.32 0.51 16 42 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 43 H 0.02 0.64 6.08 -51.93 -0.32 0.32 16 44 H 0.02 0.49 7.76 -51.93 -0.40 0.09 16 45 H 0.27 7.78 7.22 -40.82 -0.29 7.49 16 46 H 0.13 2.87 6.15 -52.48 -0.32 2.55 16 47 H 0.11 1.68 8.03 -52.49 -0.42 1.25 16 48 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 49 H 0.05 0.66 6.46 -51.93 -0.34 0.32 16 50 H 0.06 0.50 6.51 -51.93 -0.34 0.16 16 51 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -29.12 392.10 -11.51 -40.62 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -9.27 Total: 2.66 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -2.13 Total: -21.65 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.93 Total: -47.49 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.12 -11.51 -40.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245794258.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.508 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds