Wall clock time and date at job start Tue Mar 31 2020 11:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.57591 * 2 1 4 4 C 1.53203 * 109.51163 * 120.22147 * 2 1 3 5 5 C 1.53030 * 109.30370 * 62.24204 * 4 2 1 6 6 N 1.46846 * 109.52435 * 59.17688 * 5 4 2 7 7 C 1.46902 * 111.00121 * 174.16395 * 6 5 4 8 8 C 1.50695 * 109.46930 * 314.21042 * 7 6 5 9 9 C 1.38285 * 119.92714 * 269.72586 * 8 7 6 10 10 C 1.38100 * 120.07927 * 179.72629 * 9 8 7 11 11 C 1.38914 * 119.92122 * 0.54378 * 10 9 8 12 12 N 1.39681 * 120.07503 * 179.70300 * 11 10 9 13 13 C 1.46496 * 119.99802 * 180.02562 * 12 11 10 14 14 C 1.46500 * 119.99881 * 0.02562 * 12 11 10 15 15 C 1.50700 * 109.47010 * 89.99841 * 14 12 11 16 16 H 1.08005 * 119.99518 * 359.97438 * 15 14 12 17 17 C 1.37869 * 120.00235 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99678 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00335 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46805 * 89.99765 * 19 17 15 21 21 H 1.48495 * 109.46975 * 209.99870 * 19 17 15 22 22 H 1.48499 * 109.46894 * 329.99967 * 19 17 15 23 23 C 1.38911 * 119.85365 * 359.73208 * 11 10 9 24 24 C 1.38106 * 119.92062 * 359.97438 * 23 11 10 25 25 C 1.46856 * 111.19871 * 298.25760 * 6 5 4 26 26 C 1.53039 * 109.51787 * 61.74404 * 25 6 5 27 27 H 1.09002 * 109.50563 * 60.76214 * 26 25 6 28 28 C 1.53002 * 109.50209 * 180.84076 * 26 25 6 29 29 H 1.08996 * 109.47898 * 180.15745 * 1 2 3 30 30 H 1.09002 * 109.47178 * 300.15926 * 1 2 3 31 31 H 1.09005 * 109.47225 * 60.15585 * 1 2 3 32 32 H 1.08997 * 109.49417 * 302.28828 * 4 2 1 33 33 H 1.09005 * 109.49195 * 182.18947 * 4 2 1 34 34 H 1.09004 * 109.46094 * 299.16423 * 5 4 2 35 35 H 1.08994 * 109.46717 * 179.19390 * 5 4 2 36 36 H 1.09004 * 109.46870 * 74.20602 * 7 6 5 37 37 H 1.08996 * 109.46981 * 194.20767 * 7 6 5 38 38 H 1.08003 * 119.96025 * 359.97438 * 9 8 7 39 39 H 1.07996 * 120.04318 * 180.27151 * 10 9 8 40 40 H 1.08995 * 109.47433 * 90.00289 * 13 12 11 41 41 H 1.09008 * 109.47149 * 210.00186 * 13 12 11 42 42 H 1.09002 * 109.47419 * 329.99603 * 13 12 11 43 43 H 1.09002 * 109.46920 * 209.99885 * 14 12 11 44 44 H 1.08997 * 109.47171 * 330.00248 * 14 12 11 45 45 H 0.97002 * 119.99968 * 180.02562 * 18 17 15 46 46 H 1.07991 * 120.04161 * 179.97438 * 23 11 10 47 47 H 1.08006 * 119.95962 * 179.97438 * 24 23 11 48 48 H 1.09000 * 109.46462 * 301.73144 * 25 6 5 49 49 H 1.09001 * 109.45242 * 181.75123 * 25 6 5 50 50 H 1.09003 * 109.47116 * 59.91927 * 28 26 25 51 51 H 1.08996 * 109.47415 * 179.97438 * 28 26 25 52 52 H 1.09000 * 109.47041 * 299.92160 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0417 -0.7269 1.2478 5 6 1.5766 -2.1843 1.2106 6 7 2.0924 -2.8333 -0.0015 7 6 1.7822 -4.2692 -0.0025 8 6 2.1029 -4.8533 1.3491 9 6 3.3627 -5.3664 1.5976 10 6 3.6618 -5.8973 2.8370 11 6 2.6918 -5.9258 3.8309 12 7 2.9889 -6.4676 5.0836 13 6 1.9645 -6.4973 6.1305 14 6 4.3249 -7.0062 5.3505 15 6 5.2079 -5.9127 5.8941 16 1 4.8135 -4.9161 6.0270 17 6 6.5193 -6.1845 6.2217 18 7 6.9996 -7.3980 6.0594 19 14 7.6137 -4.8292 6.8962 20 1 7.5098 -4.8002 8.3773 21 1 9.0221 -5.0890 6.5037 22 1 7.1791 -3.5211 6.3438 23 6 1.4254 -5.4147 3.5762 24 6 1.1351 -4.8797 2.3365 25 6 1.5764 -2.1826 -1.2127 26 6 2.0416 -0.7251 -1.2478 27 1 3.1309 -0.6911 -1.2675 28 6 1.4866 -0.0418 -2.4992 29 1 -0.3635 -1.0276 0.0028 30 1 -0.3634 0.5163 0.8886 31 1 -0.3634 0.5114 -0.8914 32 1 1.6458 -0.2411 2.1396 33 1 3.1310 -0.6929 1.2674 34 1 0.4871 -2.2178 1.2049 35 1 1.9513 -2.7077 2.0902 36 1 0.7232 -4.4119 -0.2180 37 1 2.3789 -4.7692 -0.7653 38 1 4.1150 -5.3483 0.8229 39 1 4.6472 -6.2939 3.0318 40 1 1.4031 -7.4291 6.0632 41 1 2.4420 -6.4306 7.1081 42 1 1.2863 -5.6541 5.9992 43 1 4.2525 -7.8118 6.0812 44 1 4.7525 -7.3923 4.4252 45 1 7.9222 -7.5893 6.2902 46 1 0.6690 -5.4357 4.3466 47 1 0.1506 -4.4826 2.1377 48 1 0.4870 -2.2161 -1.2070 49 1 1.9513 -2.7048 -2.0930 50 1 0.3973 -0.0761 -2.4790 51 1 1.8178 0.9964 -2.5236 52 1 1.8500 -0.5591 -3.3871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245794264.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:34 Heat of formation + Delta-G solvation = 22.760668 kcal Electronic energy + Delta-G solvation = -27048.838164 eV Core-core repulsion = 23626.457177 eV Total energy + Delta-G solvation = -3422.380987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.98377 -38.79229 -36.21518 -34.42957 -32.67585 -32.24247 -30.45171 -30.09903 -28.17762 -27.78110 -26.54221 -25.57127 -24.46412 -22.84112 -22.34326 -21.74172 -20.98946 -19.49910 -18.36941 -16.62446 -16.44194 -16.13258 -15.45818 -15.27361 -14.93664 -14.70711 -14.51067 -14.09875 -14.06385 -13.70656 -13.46956 -13.31434 -12.94738 -12.89687 -12.73098 -12.21464 -12.17023 -12.11949 -11.95276 -11.71968 -11.60749 -11.52172 -11.38281 -11.24925 -11.02111 -10.93603 -10.73048 -10.68705 -10.49982 -10.27168 -10.19792 -10.13981 -9.88025 -9.73550 -8.82551 -8.50356 -8.25726 -8.09641 -6.45800 -6.01341 -4.17111 2.10906 2.21051 3.26753 3.33748 3.38627 4.00788 4.15571 4.41774 4.56168 4.62292 4.69905 4.76475 5.04067 5.20661 5.21973 5.26705 5.28840 5.32938 5.37983 5.47069 5.50125 5.54519 5.56914 5.59509 5.65004 5.72384 5.78613 5.80755 5.84795 5.88596 5.95188 6.02651 6.06952 6.09056 6.11827 6.19992 6.27398 6.31928 6.39073 6.41970 6.44469 6.64140 6.93308 7.01462 7.15429 7.23136 7.28301 7.29429 7.38807 7.60436 7.81378 8.15648 8.26700 8.48685 8.91879 9.49855 10.95979 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.003089 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.989697 B = 9062.199109 C = 9806.439619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.113 4.113 5 C 0.054 3.946 6 N -0.532 5.532 7 C 0.112 3.888 8 C -0.173 4.173 9 C -0.051 4.051 10 C -0.188 4.188 11 C 0.242 3.758 12 N -0.615 5.615 13 C 0.098 3.902 14 C 0.249 3.751 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.222 4.222 24 C -0.067 4.067 25 C 0.060 3.940 26 C -0.084 4.084 27 H 0.077 0.923 28 C -0.148 4.148 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.089 0.911 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.035 0.965 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.030 0.970 44 H 0.036 0.964 45 H 0.264 0.736 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.031 0.969 49 H 0.069 0.931 50 H 0.055 0.945 51 H 0.054 0.946 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 10.671 -13.224 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.074 4.074 6 N -0.256 5.256 7 C -0.015 4.015 8 C -0.176 4.176 9 C -0.071 4.071 10 C -0.211 4.211 11 C 0.135 3.865 12 N -0.321 5.321 13 C -0.046 4.046 14 C 0.129 3.871 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.245 4.245 24 C -0.087 4.087 25 C -0.068 4.068 26 C -0.103 4.103 27 H 0.096 0.904 28 C -0.205 4.205 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.107 0.893 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.130 0.870 47 H 0.121 0.879 48 H 0.050 0.950 49 H 0.088 0.912 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.782 10.493 -12.972 21.018 hybrid contribution -0.146 0.621 0.554 0.845 sum -12.928 11.114 -12.418 21.092 Atomic orbital electron populations 1.21986 0.95779 1.01838 1.01311 1.21189 0.95472 0.98976 0.95040 0.91481 1.21647 1.01646 0.94945 0.96887 1.22194 0.96661 0.94422 0.94122 1.62015 1.59607 1.02280 1.01747 1.20827 0.98039 0.87227 0.95388 1.19148 0.95227 1.07585 0.95594 1.20644 0.95062 0.95438 0.95941 1.20896 1.00177 1.07032 0.92970 1.17953 0.92554 0.90148 0.85842 1.47107 1.13645 1.62631 1.08724 1.21468 0.91490 0.99562 0.92052 1.19286 0.76806 0.93961 0.97028 1.21574 0.95734 0.96640 1.43032 0.92265 1.24958 0.97855 0.95658 0.95575 1.69931 1.15790 1.19485 1.48227 0.86526 0.79730 0.82285 0.79141 1.20651 1.21060 1.19743 1.20513 0.96416 1.09430 0.98169 1.20514 0.97571 0.97866 0.92719 1.22137 0.97000 0.94441 0.93206 1.21156 1.00955 0.93960 0.94220 0.90412 1.21861 1.01091 1.00314 0.97282 0.92516 0.92979 0.92670 0.91842 0.91126 0.95373 0.89289 0.95228 0.90732 0.86948 0.85067 0.94642 0.91461 0.92729 0.95235 0.94599 0.92645 0.86974 0.87873 0.95045 0.91240 0.92552 0.92661 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.20 37.16 0.30 -1.03 16 2 C -0.09 -0.85 2.78 -90.45 -0.25 -1.10 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.11 -1.30 5.60 -26.61 -0.15 -1.45 16 5 C 0.05 0.68 4.33 -3.84 -0.02 0.67 16 6 N -0.53 -6.76 4.80 -236.11 -1.13 -7.89 16 7 C 0.11 1.46 5.43 -4.98 -0.03 1.43 16 8 C -0.17 -2.67 4.13 -104.59 -0.43 -3.11 16 9 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 10 C -0.19 -3.82 9.21 -39.38 -0.36 -4.18 16 11 C 0.24 4.89 6.55 -83.78 -0.55 4.34 16 12 N -0.62 -13.18 2.99 -181.00 -0.54 -13.72 16 13 C 0.10 1.73 10.19 59.84 0.61 2.34 16 14 C 0.25 6.25 4.91 -5.19 -0.03 6.22 16 15 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 16 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 19 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.22 -3.84 9.21 -39.38 -0.36 -4.20 16 24 C -0.07 -1.04 7.78 -39.61 -0.31 -1.35 16 25 C 0.06 0.63 4.46 -3.83 -0.02 0.61 16 26 C -0.08 -0.80 2.66 -90.54 -0.24 -1.04 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 C -0.15 -1.13 8.79 37.16 0.33 -0.81 16 29 H 0.06 0.54 4.92 -51.93 -0.26 0.29 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.43 6.39 -51.93 -0.33 0.10 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.35 6.51 -51.93 -0.34 0.01 16 35 H 0.09 1.36 5.64 -51.93 -0.29 1.07 16 36 H 0.03 0.36 8.02 -51.93 -0.42 -0.05 16 37 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.13 2.95 6.14 -52.49 -0.32 2.63 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.20 8.07 -51.92 -0.42 0.79 16 42 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 43 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 44 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.11 1.76 6.14 -52.49 -0.32 1.43 16 47 H 0.10 1.38 8.06 -52.48 -0.42 0.96 16 48 H 0.03 0.32 6.52 -51.93 -0.34 -0.01 16 49 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 50 H 0.06 0.41 6.39 -51.93 -0.33 0.08 16 51 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -28.26 389.48 -11.44 -39.70 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -9.05 Total: 1.81 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.30 Total: -17.16 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.94 Total: -46.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.26 -11.44 -39.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245794264.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.464 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds