Wall clock time and date at job start Tue Mar 31 2020 11:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.57591 * 2 1 4 4 C 1.53203 * 109.51163 * 120.22147 * 2 1 3 5 5 C 1.53030 * 109.30370 * 62.24204 * 4 2 1 6 6 N 1.46846 * 109.52435 * 59.17688 * 5 4 2 7 7 C 1.46902 * 111.00121 * 174.16395 * 6 5 4 8 8 C 1.50695 * 109.46930 * 314.21042 * 7 6 5 9 9 C 1.38285 * 119.92714 * 269.72586 * 8 7 6 10 10 C 1.38100 * 120.07927 * 179.72629 * 9 8 7 11 11 C 1.38914 * 119.92122 * 0.54378 * 10 9 8 12 12 N 1.39681 * 120.07503 * 179.70300 * 11 10 9 13 13 C 1.46496 * 119.99802 * 180.02562 * 12 11 10 14 14 C 1.46500 * 119.99881 * 0.02562 * 12 11 10 15 15 C 1.50700 * 109.47010 * 89.99841 * 14 12 11 16 16 H 1.08005 * 119.99518 * 359.97438 * 15 14 12 17 17 C 1.37869 * 120.00235 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99678 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00335 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46805 * 89.99765 * 19 17 15 21 21 H 1.48495 * 109.46975 * 209.99870 * 19 17 15 22 22 H 1.48499 * 109.46894 * 329.99967 * 19 17 15 23 23 C 1.38911 * 119.85365 * 359.73208 * 11 10 9 24 24 C 1.38106 * 119.92062 * 359.97438 * 23 11 10 25 25 C 1.46856 * 111.19871 * 298.25760 * 6 5 4 26 26 C 1.53039 * 109.51787 * 61.74404 * 25 6 5 27 27 H 1.09002 * 109.50563 * 60.76214 * 26 25 6 28 28 C 1.53002 * 109.50209 * 180.84076 * 26 25 6 29 29 H 1.08996 * 109.47898 * 180.15745 * 1 2 3 30 30 H 1.09002 * 109.47178 * 300.15926 * 1 2 3 31 31 H 1.09005 * 109.47225 * 60.15585 * 1 2 3 32 32 H 1.08997 * 109.49417 * 302.28828 * 4 2 1 33 33 H 1.09005 * 109.49195 * 182.18947 * 4 2 1 34 34 H 1.09004 * 109.46094 * 299.16423 * 5 4 2 35 35 H 1.08994 * 109.46717 * 179.19390 * 5 4 2 36 36 H 1.09004 * 109.46870 * 74.20602 * 7 6 5 37 37 H 1.08996 * 109.46981 * 194.20767 * 7 6 5 38 38 H 1.08003 * 119.96025 * 359.97438 * 9 8 7 39 39 H 1.07996 * 120.04318 * 180.27151 * 10 9 8 40 40 H 1.08995 * 109.47433 * 90.00289 * 13 12 11 41 41 H 1.09008 * 109.47149 * 210.00186 * 13 12 11 42 42 H 1.09002 * 109.47419 * 329.99603 * 13 12 11 43 43 H 1.09002 * 109.46920 * 209.99885 * 14 12 11 44 44 H 1.08997 * 109.47171 * 330.00248 * 14 12 11 45 45 H 0.97002 * 119.99968 * 180.02562 * 18 17 15 46 46 H 1.07991 * 120.04161 * 179.97438 * 23 11 10 47 47 H 1.08006 * 119.95962 * 179.97438 * 24 23 11 48 48 H 1.09000 * 109.46462 * 301.73144 * 25 6 5 49 49 H 1.09001 * 109.45242 * 181.75123 * 25 6 5 50 50 H 1.09003 * 109.47116 * 59.91927 * 28 26 25 51 51 H 1.08996 * 109.47415 * 179.97438 * 28 26 25 52 52 H 1.09000 * 109.47041 * 299.92160 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0417 -0.7269 1.2478 5 6 1.5766 -2.1843 1.2106 6 7 2.0924 -2.8333 -0.0015 7 6 1.7822 -4.2692 -0.0025 8 6 2.1029 -4.8533 1.3491 9 6 3.3627 -5.3664 1.5976 10 6 3.6618 -5.8973 2.8370 11 6 2.6918 -5.9258 3.8309 12 7 2.9889 -6.4676 5.0836 13 6 1.9645 -6.4973 6.1305 14 6 4.3249 -7.0062 5.3505 15 6 5.2079 -5.9127 5.8941 16 1 4.8135 -4.9161 6.0270 17 6 6.5193 -6.1845 6.2217 18 7 6.9996 -7.3980 6.0594 19 14 7.6137 -4.8292 6.8962 20 1 7.5098 -4.8002 8.3773 21 1 9.0221 -5.0890 6.5037 22 1 7.1791 -3.5211 6.3438 23 6 1.4254 -5.4147 3.5762 24 6 1.1351 -4.8797 2.3365 25 6 1.5764 -2.1826 -1.2127 26 6 2.0416 -0.7251 -1.2478 27 1 3.1309 -0.6911 -1.2675 28 6 1.4866 -0.0418 -2.4992 29 1 -0.3635 -1.0276 0.0028 30 1 -0.3634 0.5163 0.8886 31 1 -0.3634 0.5114 -0.8914 32 1 1.6458 -0.2411 2.1396 33 1 3.1310 -0.6929 1.2674 34 1 0.4871 -2.2178 1.2049 35 1 1.9513 -2.7077 2.0902 36 1 0.7232 -4.4119 -0.2180 37 1 2.3789 -4.7692 -0.7653 38 1 4.1150 -5.3483 0.8229 39 1 4.6472 -6.2939 3.0318 40 1 1.4031 -7.4291 6.0632 41 1 2.4420 -6.4306 7.1081 42 1 1.2863 -5.6541 5.9992 43 1 4.2525 -7.8118 6.0812 44 1 4.7525 -7.3923 4.4252 45 1 7.9222 -7.5893 6.2902 46 1 0.6690 -5.4357 4.3466 47 1 0.1506 -4.4826 2.1377 48 1 0.4870 -2.2161 -1.2070 49 1 1.9513 -2.7048 -2.0930 50 1 0.3973 -0.0761 -2.4790 51 1 1.8178 0.9964 -2.5236 52 1 1.8500 -0.5591 -3.3871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245794264.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:33 Heat of formation + Delta-G solvation = 9.043031 kcal Electronic energy + Delta-G solvation = -27049.433005 eV Core-core repulsion = 23626.457177 eV Total energy + Delta-G solvation = -3422.975828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02182 -40.06208 -37.60556 -35.62841 -34.66122 -33.05628 -31.90763 -31.39251 -29.66964 -28.96012 -27.63011 -26.58304 -25.99813 -24.25286 -23.35011 -23.11363 -22.19015 -20.90454 -19.17507 -18.64005 -18.07282 -17.05342 -16.91383 -16.46428 -16.21795 -15.86803 -15.59116 -15.36774 -15.29691 -15.17894 -14.53475 -14.50831 -14.31830 -14.22101 -13.97812 -13.50855 -13.28080 -13.19953 -13.07257 -12.89848 -12.85285 -12.70939 -12.63481 -12.57784 -12.53645 -12.33006 -12.21044 -11.86969 -11.85715 -11.73402 -11.43228 -11.25248 -11.04203 -10.99243 -10.64639 -10.38335 -9.66095 -9.06026 -8.36331 -7.79847 -6.38025 0.69656 0.81895 1.35802 1.37441 1.48427 2.33757 2.62762 2.92423 3.05665 3.34755 3.80542 3.88392 3.97475 4.05414 4.09049 4.20830 4.28284 4.41276 4.44085 4.48568 4.52139 4.58865 4.64611 4.69228 4.70879 4.74045 4.77821 4.82250 4.85729 4.90381 4.91951 4.93010 5.01185 5.03783 5.11076 5.14493 5.19433 5.20444 5.27295 5.32168 5.34288 5.42390 5.46707 5.58274 5.64512 5.65365 5.69325 5.92562 6.06625 6.17351 6.25759 6.35581 6.49487 6.82137 6.93068 7.33897 8.82725 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.003089 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.989697 B = 9062.199109 C = 9806.439619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.114 4.114 5 C 0.059 3.941 6 N -0.546 5.546 7 C 0.115 3.885 8 C -0.158 4.158 9 C -0.056 4.056 10 C -0.216 4.216 11 C 0.215 3.785 12 N -0.632 5.632 13 C 0.098 3.902 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.048 0.952 17 C 0.013 3.987 18 N -0.927 5.927 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.273 1.273 23 C -0.216 4.216 24 C -0.059 4.059 25 C 0.061 3.939 26 C -0.083 4.083 27 H 0.062 0.938 28 C -0.142 4.142 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.267 0.733 46 H 0.133 0.867 47 H 0.136 0.864 48 H 0.041 0.959 49 H 0.075 0.925 50 H 0.063 0.937 51 H 0.060 0.940 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.787 12.878 -14.616 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.069 4.069 6 N -0.271 5.271 7 C -0.012 4.012 8 C -0.160 4.160 9 C -0.076 4.076 10 C -0.239 4.239 11 C 0.110 3.890 12 N -0.340 5.340 13 C -0.045 4.045 14 C 0.145 3.855 15 C -0.580 4.580 16 H 0.067 0.933 17 C -0.186 4.186 18 N -0.567 5.567 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.198 1.198 23 C -0.238 4.238 24 C -0.078 4.078 25 C -0.066 4.066 26 C -0.102 4.102 27 H 0.081 0.919 28 C -0.200 4.200 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.151 0.849 47 H 0.154 0.846 48 H 0.059 0.941 49 H 0.094 0.906 50 H 0.082 0.918 51 H 0.079 0.921 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.085 12.714 -14.383 24.415 hybrid contribution 0.505 -0.030 0.871 1.008 sum -14.581 12.684 -13.512 23.581 Atomic orbital electron populations 1.21944 0.94674 1.01681 1.02149 1.21171 0.96290 0.98953 0.93962 0.90880 1.21636 1.00524 0.94674 0.98319 1.22083 0.97062 0.94700 0.93067 1.61991 1.60388 1.02121 1.02620 1.20825 0.99226 0.87502 0.93645 1.19455 0.94065 1.05537 0.96970 1.20768 0.96448 0.95333 0.95002 1.20770 0.99082 1.09167 0.94885 1.18198 0.93892 0.91613 0.85318 1.46970 1.12895 1.63828 1.10284 1.21601 0.90907 1.01472 0.90503 1.18766 0.78905 0.92932 0.94887 1.21769 0.96545 0.96574 1.43085 0.93348 1.25772 0.99194 0.97880 0.95791 1.70037 1.16276 1.21264 1.49076 0.85515 0.77899 0.79189 0.78862 1.19471 1.20361 1.19774 1.20754 0.95332 1.08290 0.99465 1.20857 0.98820 0.96402 0.91679 1.22197 0.97471 0.94756 0.92196 1.21138 1.00123 0.93698 0.95206 0.91948 1.21814 1.01450 1.00448 0.96287 0.93059 0.92726 0.91338 0.91395 0.93003 0.94310 0.92125 0.93423 0.90099 0.86153 0.88774 0.92901 0.92528 0.90346 0.97248 0.97158 0.92372 0.84918 0.84629 0.94136 0.90642 0.91776 0.92086 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.20 71.98 0.59 -1.52 16 2 C -0.09 -1.44 2.78 -10.69 -0.03 -1.47 16 3 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.11 -2.45 5.60 30.67 0.17 -2.28 16 5 C 0.06 1.38 4.33 86.32 0.37 1.76 16 6 N -0.55 -12.73 4.80 -900.92 -4.32 -17.06 16 7 C 0.11 2.69 5.43 85.56 0.46 3.15 16 8 C -0.16 -4.64 4.13 -19.84 -0.08 -4.72 16 9 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 10 C -0.22 -9.26 9.21 22.40 0.21 -9.06 16 11 C 0.21 8.87 6.55 38.21 0.25 9.12 16 12 N -0.63 -28.03 2.99 -726.56 -2.17 -30.21 16 13 C 0.10 3.43 10.19 127.77 1.30 4.74 16 14 C 0.27 14.23 4.91 85.63 0.42 14.65 16 15 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 16 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 17 C 0.01 0.73 5.46 84.65 0.46 1.19 16 18 N -0.93 -55.05 13.29 21.44 0.28 -54.77 16 19 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 23 C -0.22 -7.14 9.21 22.40 0.21 -6.93 16 24 C -0.06 -1.66 7.78 22.25 0.17 -1.49 16 25 C 0.06 1.11 4.46 86.32 0.39 1.50 16 26 C -0.08 -1.39 2.66 -10.74 -0.03 -1.42 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 C -0.14 -1.75 8.79 71.98 0.63 -1.12 16 29 H 0.05 0.80 4.92 -2.39 -0.01 0.78 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.81 6.39 -2.38 -0.02 0.79 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.04 0.83 6.51 -2.38 -0.02 0.82 16 35 H 0.06 1.78 5.64 -2.39 -0.01 1.76 16 36 H 0.05 0.97 8.02 -2.39 -0.02 0.95 16 37 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 38 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 39 H 0.09 4.66 6.14 -2.91 -0.02 4.64 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 42 H 0.08 2.32 6.20 -2.39 -0.01 2.31 16 43 H 0.01 0.53 8.07 -2.39 -0.02 0.51 16 44 H 0.01 0.60 6.20 -2.39 -0.01 0.59 16 45 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 46 H 0.13 3.79 6.14 -2.92 -0.02 3.78 16 47 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 48 H 0.04 0.68 6.52 -2.39 -0.02 0.67 16 49 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 50 H 0.06 0.70 6.39 -2.39 -0.02 0.69 16 51 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -63.37 389.48 2.64 -60.72 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.88 Total: 20.86 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 5.95 Total: -26.31 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -6.21 Total: -102.03 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -63.37 2.64 -60.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245794264.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.767 kcal (2) G-P(sol) polarization free energy of solvation -63.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds