Wall clock time and date at job start Tue Mar 31 2020 11:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46952 * 110.99910 * 2 1 4 4 C 1.53050 * 109.36768 * 176.81052 * 3 2 1 5 5 N 1.46960 * 109.36287 * 58.39646 * 4 3 2 6 6 C 1.46898 * 110.99904 * 176.80919 * 5 4 3 7 7 C 1.52995 * 109.47469 * 275.51895 * 6 5 4 8 8 C 1.52998 * 109.47275 * 57.33026 * 7 6 5 9 9 C 1.53001 * 109.46876 * 297.32698 * 7 6 5 10 10 C 1.53002 * 109.47025 * 177.33060 * 7 6 5 11 11 C 1.50697 * 109.47116 * 179.97438 * 10 7 6 12 12 H 1.08004 * 120.00146 * 0.02562 * 11 10 7 13 13 C 1.37882 * 120.00107 * 179.97438 * 11 10 7 14 14 N 1.31516 * 120.00030 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00054 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47268 * 90.00232 * 15 13 11 17 17 H 1.48501 * 109.47476 * 210.00414 * 15 13 11 18 18 H 1.48502 * 109.47233 * 330.00036 * 15 13 11 19 19 C 1.46952 * 110.88345 * 300.68430 * 5 4 3 20 20 H 1.08998 * 109.48845 * 299.33155 * 19 5 4 21 21 C 1.50701 * 109.49211 * 179.28806 * 19 5 4 22 22 C 1.38235 * 119.99763 * 319.72161 * 21 19 5 23 23 C 1.38235 * 119.99965 * 179.76262 * 22 21 19 24 24 C 1.38234 * 119.99800 * 0.51488 * 23 22 21 25 25 C 1.38236 * 120.00124 * 359.73922 * 24 23 22 26 26 C 1.38234 * 120.00144 * 139.99913 * 21 19 5 27 27 C 1.46951 * 111.00160 * 236.19459 * 2 1 3 28 28 H 1.09001 * 109.46739 * 183.80530 * 1 2 3 29 29 H 1.09007 * 109.47363 * 303.80181 * 1 2 3 30 30 H 1.09001 * 109.47264 * 63.80270 * 1 2 3 31 31 H 1.09006 * 109.48820 * 296.77708 * 3 2 1 32 32 H 1.09002 * 109.49493 * 56.81826 * 3 2 1 33 33 H 1.09002 * 109.48962 * 298.43177 * 4 3 2 34 34 H 1.09003 * 109.49247 * 178.36552 * 4 3 2 35 35 H 1.09009 * 109.46844 * 155.51751 * 6 5 4 36 36 H 1.08999 * 109.47266 * 35.52468 * 6 5 4 37 37 H 1.09003 * 109.46819 * 169.77362 * 8 7 6 38 38 H 1.08996 * 109.46725 * 289.77981 * 8 7 6 39 39 H 1.09004 * 109.47109 * 49.77856 * 8 7 6 40 40 H 1.08990 * 109.47724 * 299.99936 * 9 7 6 41 41 H 1.09003 * 109.47247 * 60.00664 * 9 7 6 42 42 H 1.09007 * 109.46700 * 180.02562 * 9 7 6 43 43 H 1.09007 * 109.47074 * 60.00187 * 10 7 6 44 44 H 1.08991 * 109.47368 * 299.99913 * 10 7 6 45 45 H 0.97002 * 119.99634 * 0.02562 * 14 13 11 46 46 H 1.08000 * 119.99801 * 0.02562 * 22 21 19 47 47 H 1.07997 * 120.00409 * 180.23236 * 23 22 21 48 48 H 1.08001 * 119.99984 * 179.72126 * 24 23 22 49 49 H 1.08001 * 120.00247 * 179.97438 * 25 24 23 50 50 H 1.08002 * 119.99725 * 359.97438 * 26 21 19 51 51 H 1.09002 * 109.48574 * 63.22007 * 27 2 1 52 52 H 1.08993 * 109.49124 * 303.15585 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0501 0.5658 -1.0597 6 6 5.5190 0.5660 -1.0597 7 6 6.0290 1.8362 -1.7433 8 6 5.4648 3.0636 -1.0249 9 6 5.5746 1.8466 -3.2042 10 6 7.5575 1.8686 -1.6843 11 6 8.0599 3.1194 -2.3582 12 1 7.3590 3.8214 -2.7854 13 6 9.4142 3.3682 -2.4284 14 7 10.2677 2.5137 -1.9078 15 14 10.0368 4.9190 -3.2630 16 1 10.1399 6.0121 -2.2631 17 1 11.3747 4.6605 -3.8534 18 1 9.0909 5.3175 -4.3362 19 6 3.5235 -0.8061 -1.0597 20 1 3.8256 -1.3116 -0.1425 21 6 4.0687 -1.5540 -2.2490 22 6 4.1780 -0.9207 -3.4729 23 6 4.6827 -1.6052 -4.5627 24 6 5.0682 -2.9262 -4.4311 25 6 4.9539 -3.5611 -3.2084 26 6 4.4541 -2.8750 -2.1174 27 6 1.9957 -0.7633 -1.1399 28 1 -0.3633 -1.0254 0.0682 29 1 -0.3634 0.5717 0.8540 30 1 -0.3634 0.4537 -0.9221 31 1 1.6937 1.8773 -0.9174 32 1 1.6009 1.9130 0.8600 33 1 3.8253 0.8481 1.0107 34 1 3.9177 2.3449 0.0512 35 1 5.8824 -0.3083 -1.6000 36 1 5.8824 0.5352 -0.0326 37 1 5.9651 3.9604 -1.3905 38 1 4.3951 3.1390 -1.2200 39 1 5.6325 2.9658 0.0477 40 1 5.9765 0.9723 -3.7161 41 1 4.4857 1.8237 -3.2463 42 1 5.9384 2.7515 -3.6914 43 1 7.9595 0.9941 -2.1962 44 1 7.8813 1.8611 -0.6436 45 1 9.9444 1.7082 -1.4747 46 1 3.8730 0.1101 -3.5766 47 1 4.7716 -1.1094 -5.5180 48 1 5.4583 -3.4624 -5.2836 49 1 5.2547 -4.5933 -3.1057 50 1 4.3649 -3.3709 -1.1622 51 1 1.6937 -0.2822 -2.0703 52 1 1.6014 -1.7790 -1.1108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246183655.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:59 Heat of formation + Delta-G solvation = 34.943404 kcal Electronic energy + Delta-G solvation = -28445.322598 eV Core-core repulsion = 25023.469894 eV Total energy + Delta-G solvation = -3421.852704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.29665 -38.39177 -37.09770 -34.60614 -32.73987 -31.99090 -30.79182 -29.26453 -28.55742 -26.65338 -26.43950 -25.34453 -23.96128 -23.30254 -22.45297 -22.21991 -21.04314 -19.49544 -18.24594 -16.85084 -16.38076 -15.84924 -15.52187 -15.35375 -15.12453 -14.83655 -14.41493 -14.18323 -13.94447 -13.67466 -13.48444 -13.17145 -13.11635 -12.73425 -12.68828 -12.62524 -12.23092 -11.97632 -11.78654 -11.60951 -11.46018 -11.33508 -11.13199 -11.00165 -10.84454 -10.77323 -10.55912 -10.51812 -10.33359 -10.07836 -9.88698 -9.67854 -9.15858 -8.75789 -8.55491 -8.51167 -8.36820 -8.23885 -7.98822 -6.25772 -3.93152 1.44400 1.56151 3.46848 3.50458 3.65686 3.76228 3.91005 4.09140 4.60775 4.76712 4.90295 4.99219 5.05162 5.11792 5.13042 5.25024 5.28520 5.32889 5.45899 5.47384 5.49399 5.58097 5.65382 5.66858 5.67399 5.71349 5.81420 5.85058 5.98218 6.01152 6.06587 6.09450 6.18826 6.24813 6.31314 6.51120 6.55356 6.59868 6.68472 6.71947 6.76664 6.81098 6.87178 6.88983 7.10335 7.15822 7.19172 7.25828 7.36939 7.42627 7.51269 7.66237 8.34333 8.57231 8.99157 9.77368 11.14088 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.004409 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.968399 B = 6349.394731 C = 7875.066739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.035 3.965 5 N -0.523 5.523 6 C 0.063 3.937 7 C -0.041 4.041 8 C -0.132 4.132 9 C -0.115 4.115 10 C 0.021 3.979 11 C -0.585 4.585 12 H 0.053 0.947 13 C 0.012 3.988 14 N -0.918 5.918 15 Si 1.067 2.933 16 H -0.290 1.290 17 H -0.286 1.286 18 H -0.289 1.289 19 C 0.127 3.873 20 H 0.051 0.949 21 C -0.079 4.079 22 C -0.086 4.086 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.116 4.116 27 C 0.071 3.929 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.003 0.997 44 H 0.001 0.999 45 H 0.268 0.732 46 H 0.137 0.863 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.116 0.884 51 H 0.043 0.957 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.678 -8.695 0.530 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.093 4.093 5 N -0.248 5.248 6 C -0.064 4.064 7 C -0.041 4.041 8 C -0.189 4.189 9 C -0.173 4.173 10 C -0.017 4.017 11 C -0.623 4.623 12 H 0.071 0.929 13 C -0.191 4.191 14 N -0.555 5.555 15 Si 0.896 3.104 16 H -0.217 1.217 17 H -0.212 1.212 18 H -0.216 1.216 19 C 0.018 3.982 20 H 0.069 0.931 21 C -0.080 4.080 22 C -0.104 4.104 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.135 4.135 27 C -0.058 4.058 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.022 0.978 44 H 0.020 0.980 45 H 0.078 0.922 46 H 0.154 0.846 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.135 0.865 50 H 0.134 0.866 51 H 0.062 0.938 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.321 -7.850 0.146 19.018 hybrid contribution -1.247 -0.986 0.497 1.665 sum -18.568 -8.836 0.642 20.574 Atomic orbital electron populations 1.22325 0.87434 1.01980 1.00436 1.62152 1.07550 1.14438 1.42967 1.22207 0.95308 0.88796 1.00776 1.22785 0.93536 1.01213 0.91760 1.62153 1.08989 1.11344 1.42278 1.22371 0.84936 1.00105 0.98970 1.20358 0.97198 0.91874 0.94691 1.22015 0.98759 0.99592 0.98548 1.21729 0.98485 1.01221 0.95820 1.19237 0.89324 0.97221 0.95875 1.22035 0.93940 1.06750 1.39603 0.92896 1.25755 0.93655 1.02944 0.96779 1.70741 1.37278 1.11711 1.35795 0.83575 0.75732 0.75001 0.76102 1.21665 1.21202 1.21555 1.20518 0.93481 0.89483 0.94712 0.93068 1.19659 0.99781 0.93713 0.94876 1.21313 0.97104 1.00387 0.91584 1.21199 0.99358 0.94596 0.99025 1.21128 1.00098 0.95235 0.97456 1.21018 1.00555 0.99755 0.93119 1.20988 0.99623 0.94212 0.98669 1.22128 0.93616 0.98126 0.91899 0.91574 0.91456 0.95678 0.93985 0.90631 0.94611 0.87337 0.91279 0.95168 0.91672 0.93514 0.94459 0.94174 0.93853 0.92699 0.97835 0.98045 0.92189 0.84557 0.86242 0.86510 0.86466 0.86569 0.93842 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.60 60.06 0.58 0.82 16 2 N -0.55 -6.28 4.97 -242.76 -1.21 -7.49 16 3 C 0.06 0.67 5.62 -3.77 -0.02 0.65 16 4 C 0.03 0.47 4.88 -3.77 -0.02 0.45 16 5 N -0.52 -7.66 2.97 -227.88 -0.68 -8.34 16 6 C 0.06 1.12 3.70 -3.83 -0.01 1.10 16 7 C -0.04 -0.81 0.60 -154.51 -0.09 -0.90 16 8 C -0.13 -2.47 6.64 37.16 0.25 -2.23 16 9 C -0.12 -2.21 6.80 37.16 0.25 -1.96 16 10 C 0.02 0.53 3.35 -27.88 -0.09 0.43 16 11 C -0.58 -16.14 7.51 -34.44 -0.26 -16.40 16 12 H 0.05 1.44 5.74 -52.48 -0.30 1.14 16 13 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 14 N -0.92 -28.35 13.65 55.43 0.76 -27.60 16 15 Si 1.07 25.54 29.90 -169.99 -5.08 20.45 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.13 1.70 2.16 -68.81 -0.15 1.55 16 20 H 0.05 0.73 8.00 -51.93 -0.42 0.32 16 21 C -0.08 -1.08 3.33 -104.62 -0.35 -1.43 16 22 C -0.09 -1.21 7.20 -39.58 -0.29 -1.49 16 23 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 24 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 25 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 26 C -0.12 -1.47 9.67 -39.58 -0.38 -1.85 16 27 C 0.07 0.84 4.88 -3.77 -0.02 0.82 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.11 1.53 3.77 -51.93 -0.20 1.34 16 35 H 0.07 1.29 6.06 -51.92 -0.31 0.98 16 36 H 0.03 0.56 7.85 -51.93 -0.41 0.15 16 37 H 0.06 1.36 6.35 -51.93 -0.33 1.03 16 38 H 0.05 0.77 6.22 -51.93 -0.32 0.44 16 39 H 0.04 0.67 7.41 -51.93 -0.38 0.29 16 40 H 0.04 0.78 7.26 -51.93 -0.38 0.40 16 41 H 0.04 0.74 6.18 -51.93 -0.32 0.42 16 42 H 0.05 1.15 6.62 -51.92 -0.34 0.81 16 43 H 0.00 0.09 8.01 -51.92 -0.42 -0.32 16 44 H 0.00 0.04 8.01 -51.93 -0.42 -0.38 16 45 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 46 H 0.14 2.01 5.28 -52.49 -0.28 1.74 16 47 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 48 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 49 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 50 H 0.12 1.29 8.04 -52.49 -0.42 0.86 16 51 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 52 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -30.08 381.63 -11.34 -41.42 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.98 Total: 1.83 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -1.90 Total: -26.03 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -1.13 Total: -43.42 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.08 -11.34 -41.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246183655.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.364 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds