Wall clock time and date at job start Tue Mar 31 2020 11:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46952 * 110.99910 * 2 1 4 4 C 1.53050 * 109.36768 * 176.81052 * 3 2 1 5 5 N 1.46960 * 109.36287 * 58.39646 * 4 3 2 6 6 C 1.46898 * 110.99904 * 176.80919 * 5 4 3 7 7 C 1.52995 * 109.47469 * 275.51895 * 6 5 4 8 8 C 1.52998 * 109.47275 * 57.33026 * 7 6 5 9 9 C 1.53001 * 109.46876 * 297.32698 * 7 6 5 10 10 C 1.53002 * 109.47025 * 177.33060 * 7 6 5 11 11 C 1.50697 * 109.47116 * 179.97438 * 10 7 6 12 12 H 1.08004 * 120.00146 * 0.02562 * 11 10 7 13 13 C 1.37882 * 120.00107 * 179.97438 * 11 10 7 14 14 N 1.31516 * 120.00030 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00054 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47268 * 90.00232 * 15 13 11 17 17 H 1.48501 * 109.47476 * 210.00414 * 15 13 11 18 18 H 1.48502 * 109.47233 * 330.00036 * 15 13 11 19 19 C 1.46952 * 110.88345 * 300.68430 * 5 4 3 20 20 H 1.08998 * 109.48845 * 299.33155 * 19 5 4 21 21 C 1.50701 * 109.49211 * 179.28806 * 19 5 4 22 22 C 1.38235 * 119.99763 * 319.72161 * 21 19 5 23 23 C 1.38235 * 119.99965 * 179.76262 * 22 21 19 24 24 C 1.38234 * 119.99800 * 0.51488 * 23 22 21 25 25 C 1.38236 * 120.00124 * 359.73922 * 24 23 22 26 26 C 1.38234 * 120.00144 * 139.99913 * 21 19 5 27 27 C 1.46951 * 111.00160 * 236.19459 * 2 1 3 28 28 H 1.09001 * 109.46739 * 183.80530 * 1 2 3 29 29 H 1.09007 * 109.47363 * 303.80181 * 1 2 3 30 30 H 1.09001 * 109.47264 * 63.80270 * 1 2 3 31 31 H 1.09006 * 109.48820 * 296.77708 * 3 2 1 32 32 H 1.09002 * 109.49493 * 56.81826 * 3 2 1 33 33 H 1.09002 * 109.48962 * 298.43177 * 4 3 2 34 34 H 1.09003 * 109.49247 * 178.36552 * 4 3 2 35 35 H 1.09009 * 109.46844 * 155.51751 * 6 5 4 36 36 H 1.08999 * 109.47266 * 35.52468 * 6 5 4 37 37 H 1.09003 * 109.46819 * 169.77362 * 8 7 6 38 38 H 1.08996 * 109.46725 * 289.77981 * 8 7 6 39 39 H 1.09004 * 109.47109 * 49.77856 * 8 7 6 40 40 H 1.08990 * 109.47724 * 299.99936 * 9 7 6 41 41 H 1.09003 * 109.47247 * 60.00664 * 9 7 6 42 42 H 1.09007 * 109.46700 * 180.02562 * 9 7 6 43 43 H 1.09007 * 109.47074 * 60.00187 * 10 7 6 44 44 H 1.08991 * 109.47368 * 299.99913 * 10 7 6 45 45 H 0.97002 * 119.99634 * 0.02562 * 14 13 11 46 46 H 1.08000 * 119.99801 * 0.02562 * 22 21 19 47 47 H 1.07997 * 120.00409 * 180.23236 * 23 22 21 48 48 H 1.08001 * 119.99984 * 179.72126 * 24 23 22 49 49 H 1.08001 * 120.00247 * 179.97438 * 25 24 23 50 50 H 1.08002 * 119.99725 * 359.97438 * 26 21 19 51 51 H 1.09002 * 109.48574 * 63.22007 * 27 2 1 52 52 H 1.08993 * 109.49124 * 303.15585 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0501 0.5658 -1.0597 6 6 5.5190 0.5660 -1.0597 7 6 6.0290 1.8362 -1.7433 8 6 5.4648 3.0636 -1.0249 9 6 5.5746 1.8466 -3.2042 10 6 7.5575 1.8686 -1.6843 11 6 8.0599 3.1194 -2.3582 12 1 7.3590 3.8214 -2.7854 13 6 9.4142 3.3682 -2.4284 14 7 10.2677 2.5137 -1.9078 15 14 10.0368 4.9190 -3.2630 16 1 10.1399 6.0121 -2.2631 17 1 11.3747 4.6605 -3.8534 18 1 9.0909 5.3175 -4.3362 19 6 3.5235 -0.8061 -1.0597 20 1 3.8256 -1.3116 -0.1425 21 6 4.0687 -1.5540 -2.2490 22 6 4.1780 -0.9207 -3.4729 23 6 4.6827 -1.6052 -4.5627 24 6 5.0682 -2.9262 -4.4311 25 6 4.9539 -3.5611 -3.2084 26 6 4.4541 -2.8750 -2.1174 27 6 1.9957 -0.7633 -1.1399 28 1 -0.3633 -1.0254 0.0682 29 1 -0.3634 0.5717 0.8540 30 1 -0.3634 0.4537 -0.9221 31 1 1.6937 1.8773 -0.9174 32 1 1.6009 1.9130 0.8600 33 1 3.8253 0.8481 1.0107 34 1 3.9177 2.3449 0.0512 35 1 5.8824 -0.3083 -1.6000 36 1 5.8824 0.5352 -0.0326 37 1 5.9651 3.9604 -1.3905 38 1 4.3951 3.1390 -1.2200 39 1 5.6325 2.9658 0.0477 40 1 5.9765 0.9723 -3.7161 41 1 4.4857 1.8237 -3.2463 42 1 5.9384 2.7515 -3.6914 43 1 7.9595 0.9941 -2.1962 44 1 7.8813 1.8611 -0.6436 45 1 9.9444 1.7082 -1.4747 46 1 3.8730 0.1101 -3.5766 47 1 4.7716 -1.1094 -5.5180 48 1 5.4583 -3.4624 -5.2836 49 1 5.2547 -4.5933 -3.1057 50 1 4.3649 -3.3709 -1.1622 51 1 1.6937 -0.2822 -2.0703 52 1 1.6014 -1.7790 -1.1108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246183655.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:58 Heat of formation + Delta-G solvation = 18.616512 kcal Electronic energy + Delta-G solvation = -28446.030585 eV Core-core repulsion = 25023.469894 eV Total energy + Delta-G solvation = -3422.560691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41561 -39.42591 -38.51508 -35.96506 -34.46979 -33.33051 -31.78909 -30.32478 -29.64308 -28.51523 -28.06804 -26.67936 -25.12684 -24.73134 -23.79880 -23.39060 -22.03324 -20.55269 -19.96997 -18.45903 -17.87839 -16.91106 -16.66122 -16.40798 -16.31261 -16.01239 -15.62689 -15.37411 -15.30481 -15.16405 -14.94869 -14.56190 -14.22703 -14.15649 -13.86334 -13.73011 -13.42290 -13.41455 -13.03865 -12.92299 -12.76966 -12.68730 -12.60009 -12.35790 -12.27752 -12.16806 -11.98677 -11.92573 -11.75578 -11.61481 -11.43270 -11.32737 -10.91682 -10.47790 -10.41115 -9.75734 -9.57028 -9.40101 -9.22765 -8.58581 -6.26176 0.44732 0.56317 1.52740 1.61989 1.78508 2.59586 2.78666 2.89159 3.02357 3.24519 3.74521 3.92029 3.95652 4.03357 4.11970 4.18333 4.21786 4.24555 4.29236 4.34606 4.35783 4.41096 4.59681 4.60440 4.65232 4.67963 4.70217 4.77226 4.80155 4.85237 4.90606 4.94278 4.98468 5.01327 5.03926 5.08332 5.11796 5.15444 5.23876 5.34575 5.39374 5.51154 5.58463 5.61918 5.68020 5.69419 5.75429 5.97055 5.97381 6.11413 6.14397 6.19834 6.24411 6.30131 6.68713 7.53742 8.81238 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.004409 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.968399 B = 6349.394731 C = 7875.066739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.063 3.937 4 C 0.034 3.966 5 N -0.519 5.519 6 C 0.080 3.920 7 C -0.037 4.037 8 C -0.122 4.122 9 C -0.101 4.101 10 C 0.027 3.973 11 C -0.585 4.585 12 H 0.059 0.941 13 C -0.045 4.045 14 N -0.947 5.947 15 Si 1.114 2.886 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.268 1.268 19 C 0.130 3.870 20 H 0.043 0.957 21 C -0.090 4.090 22 C -0.099 4.099 23 C -0.138 4.138 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.125 4.125 27 C 0.079 3.921 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.028 0.972 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.030 0.970 41 H 0.067 0.933 42 H 0.035 0.965 43 H -0.026 1.026 44 H -0.025 1.025 45 H 0.251 0.749 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.130 0.870 51 H 0.038 0.962 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.851 -8.574 0.193 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.281 5.281 3 C -0.065 4.065 4 C -0.094 4.094 5 N -0.243 5.243 6 C -0.048 4.048 7 C -0.038 4.038 8 C -0.179 4.179 9 C -0.158 4.158 10 C -0.010 4.010 11 C -0.623 4.623 12 H 0.077 0.923 13 C -0.241 4.241 14 N -0.586 5.586 15 Si 0.936 3.064 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.192 1.192 19 C 0.022 3.978 20 H 0.061 0.939 21 C -0.091 4.091 22 C -0.117 4.117 23 C -0.156 4.156 24 C -0.145 4.145 25 C -0.147 4.147 26 C -0.144 4.144 27 C -0.049 4.049 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.046 0.954 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.054 0.946 43 H -0.007 1.007 44 H -0.007 1.007 45 H 0.061 0.939 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.156 0.844 49 H 0.159 0.841 50 H 0.148 0.852 51 H 0.056 0.944 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.537 -7.736 -0.183 21.013 hybrid contribution -0.603 -1.110 0.628 1.410 sum -20.139 -8.846 0.445 22.001 Atomic orbital electron populations 1.22382 0.85642 1.02937 1.01079 1.62169 1.09179 1.14124 1.42640 1.22155 0.93509 0.89272 1.01524 1.22801 0.95215 1.00481 0.90892 1.62105 1.06645 1.12633 1.42894 1.22005 0.87174 0.98120 0.97478 1.20243 0.93570 0.93936 0.96022 1.21927 1.00152 0.97539 0.98302 1.21585 0.99864 0.99738 0.94620 1.19142 0.93213 0.95232 0.93440 1.22379 0.94101 1.07210 1.38610 0.92329 1.27289 0.94626 1.05307 0.96894 1.70886 1.37785 1.12092 1.37806 0.82970 0.75512 0.71819 0.76058 1.20055 1.21385 1.19223 1.20528 0.94682 0.88298 0.94307 0.93930 1.19743 1.00313 0.94295 0.94728 1.21271 0.98129 1.00110 0.92233 1.21416 0.99543 0.95320 0.99283 1.21439 0.99629 0.95009 0.98445 1.21357 0.99692 1.00900 0.92729 1.21234 0.99450 0.94044 0.99643 1.22038 0.92158 0.98873 0.91878 0.90617 0.90281 0.95426 0.94136 0.88818 0.95358 0.87824 0.92556 0.96548 0.93904 0.90640 0.94291 0.95043 0.91379 0.94608 1.00747 1.00680 0.93925 0.85556 0.85421 0.84424 0.84078 0.85217 0.94399 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.60 127.69 1.23 1.64 16 2 N -0.56 -11.48 4.97 -921.95 -4.58 -16.06 16 3 C 0.06 1.34 5.62 86.31 0.49 1.82 16 4 C 0.03 0.87 4.88 86.31 0.42 1.29 16 5 N -0.52 -14.84 2.97 -874.88 -2.60 -17.43 16 6 C 0.08 2.88 3.70 86.30 0.32 3.19 16 7 C -0.04 -1.50 0.60 -52.18 -0.03 -1.53 16 8 C -0.12 -4.53 6.64 71.98 0.48 -4.05 16 9 C -0.10 -3.87 6.80 71.98 0.49 -3.38 16 10 C 0.03 1.43 3.35 29.85 0.10 1.53 16 11 C -0.58 -32.92 7.51 25.60 0.19 -32.73 16 12 H 0.06 3.19 5.74 -2.91 -0.02 3.18 16 13 C -0.05 -2.64 5.46 84.66 0.46 -2.17 16 14 N -0.95 -60.23 13.65 21.45 0.29 -59.94 16 15 Si 1.11 51.27 29.90 68.60 2.05 53.32 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 17 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 C 0.13 3.38 2.16 44.18 0.10 3.48 16 20 H 0.04 1.19 8.00 -2.39 -0.02 1.17 16 21 C -0.09 -2.39 3.33 -19.87 -0.07 -2.45 16 22 C -0.10 -2.76 7.20 22.27 0.16 -2.60 16 23 C -0.14 -3.57 10.05 22.27 0.22 -3.35 16 24 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 25 C -0.13 -2.89 10.05 22.27 0.22 -2.67 16 26 C -0.13 -3.03 9.67 22.27 0.22 -2.82 16 27 C 0.08 1.73 4.88 86.31 0.42 2.15 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.03 8.13 -2.38 -0.02 1.01 16 30 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.09 1.66 8.13 -2.39 -0.02 1.64 16 33 H 0.03 0.78 8.12 -2.39 -0.02 0.77 16 34 H 0.10 2.77 3.77 -2.39 -0.01 2.76 16 35 H 0.06 2.17 6.06 -2.38 -0.01 2.15 16 36 H 0.02 0.62 7.85 -2.39 -0.02 0.60 16 37 H 0.04 1.77 6.35 -2.39 -0.02 1.75 16 38 H 0.08 2.35 6.22 -2.39 -0.01 2.34 16 39 H 0.04 1.40 7.41 -2.38 -0.02 1.39 16 40 H 0.03 1.23 7.26 -2.39 -0.02 1.21 16 41 H 0.07 2.26 6.18 -2.39 -0.01 2.24 16 42 H 0.03 1.48 6.62 -2.38 -0.02 1.47 16 43 H -0.03 -1.50 8.01 -2.38 -0.02 -1.51 16 44 H -0.03 -1.44 8.01 -2.39 -0.02 -1.46 16 45 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 46 H 0.13 3.67 5.28 -2.91 -0.02 3.66 16 47 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 48 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 49 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 50 H 0.13 2.70 8.04 -2.91 -0.02 2.68 16 51 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -66.27 381.63 1.78 -64.48 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.98 Total: 21.01 kcal Atomic # 6 Polarization: -51.03 SS G_CDS: 5.64 Total: -45.39 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -6.88 Total: -93.43 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.32 kcal Total: -66.27 1.78 -64.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246183655.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.100 kcal (2) G-P(sol) polarization free energy of solvation -66.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds