Wall clock time and date at job start Tue Mar 31 2020 11:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.53517 * 2 1 4 4 C 1.53039 * 109.55682 * 239.92920 * 2 1 3 5 5 N 1.46848 * 109.57302 * 180.94264 * 4 2 1 6 6 C 1.46900 * 111.00289 * 185.80527 * 5 4 2 7 7 C 1.50703 * 109.46933 * 45.79186 * 6 5 4 8 8 C 1.38236 * 120.00017 * 269.72788 * 7 6 5 9 9 C 1.38239 * 119.99810 * 179.76197 * 8 7 6 10 10 C 1.38226 * 120.00011 * 0.48843 * 9 8 7 11 11 C 1.38240 * 120.00170 * 359.78930 * 10 9 8 12 12 C 1.38228 * 119.99916 * 359.95221 * 11 10 9 13 13 C 1.46855 * 111.19871 * 61.71024 * 5 4 2 14 14 C 1.53041 * 109.52143 * 298.25801 * 13 5 4 15 15 H 1.08999 * 109.50277 * 299.23490 * 14 13 5 16 16 C 1.53002 * 109.50094 * 179.11867 * 14 13 5 17 17 C 1.53116 * 109.50246 * 120.09686 * 2 1 3 18 18 H 1.08997 * 109.52454 * 57.62718 * 17 2 1 19 19 N 1.46901 * 109.52401 * 297.50356 * 17 2 1 20 20 C 1.46910 * 110.99767 * 305.61289 * 19 17 2 21 21 C 1.53004 * 109.47049 * 185.24857 * 20 19 17 22 22 C 1.50699 * 109.47044 * 179.97438 * 21 20 19 23 23 H 1.07997 * 119.99853 * 359.97438 * 22 21 20 24 24 C 1.37877 * 119.99596 * 180.02562 * 22 21 20 25 25 N 1.31510 * 120.00201 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99682 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47145 * 89.99615 * 26 24 22 28 28 H 1.48497 * 109.47299 * 209.99862 * 26 24 22 29 29 H 1.48503 * 109.47294 * 329.99539 * 26 24 22 30 30 H 1.08996 * 109.47313 * 304.09193 * 1 2 3 31 31 H 1.09004 * 109.47134 * 64.09209 * 1 2 3 32 32 H 1.09004 * 109.47037 * 184.08923 * 1 2 3 33 33 H 1.08994 * 109.46818 * 60.89828 * 4 2 1 34 34 H 1.08999 * 109.40697 * 300.95201 * 4 2 1 35 35 H 1.09002 * 109.47452 * 165.79064 * 6 5 4 36 36 H 1.08998 * 109.47353 * 285.79078 * 6 5 4 37 37 H 1.08000 * 120.00009 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99625 * 180.24963 * 9 8 7 39 39 H 1.08001 * 119.99942 * 179.76201 * 10 9 8 40 40 H 1.08004 * 119.99955 * 179.97438 * 11 10 9 41 41 H 1.08000 * 120.00565 * 179.97438 * 12 11 10 42 42 H 1.08998 * 109.46061 * 178.24040 * 13 5 4 43 43 H 1.08997 * 109.45212 * 58.26907 * 13 5 4 44 44 H 1.09005 * 109.46938 * 300.19896 * 16 14 13 45 45 H 1.08999 * 109.47301 * 60.19352 * 16 14 13 46 46 H 1.08996 * 109.46653 * 180.19874 * 16 14 13 47 47 H 1.00900 * 110.99997 * 69.56212 * 19 17 2 48 48 H 1.09000 * 109.46605 * 305.24428 * 20 19 17 49 49 H 1.08993 * 109.46984 * 65.24936 * 20 19 17 50 50 H 1.09001 * 109.47246 * 300.00048 * 21 20 19 51 51 H 1.09005 * 109.47143 * 59.99794 * 21 20 19 52 52 H 0.97002 * 119.99599 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0423 -0.7226 -1.2480 5 7 3.5106 -0.7425 -1.2370 6 6 4.0389 -1.3064 -2.4864 7 6 3.3109 -0.7001 -3.6584 8 6 2.1667 -1.3019 -4.1478 9 6 1.4962 -0.7430 -5.2198 10 6 1.9756 0.4120 -5.8087 11 6 3.1231 1.0107 -5.3229 12 6 3.7905 0.4548 -4.2477 13 6 4.0230 -1.4743 -0.0714 14 6 3.5711 -0.7732 1.2117 15 1 3.9686 0.2416 1.2313 16 6 4.0868 -1.5482 2.4260 17 6 2.0412 -0.7238 1.2487 18 1 1.6443 -1.7387 1.2696 19 7 1.6024 -0.0004 2.4496 20 6 2.0099 1.4099 2.3929 21 6 1.6524 2.0975 3.7122 22 6 2.0711 3.5440 3.6543 23 1 2.5450 3.9338 2.7657 24 6 1.8498 4.3695 4.7363 25 7 1.2731 3.8946 5.8186 26 14 2.3681 6.1627 4.6643 27 1 1.2503 6.9798 4.1277 28 1 2.7141 6.6332 6.0296 29 1 3.5519 6.3007 3.7784 30 1 -0.3634 0.5760 0.8510 31 1 -0.3633 0.4490 -0.9244 32 1 -0.3633 -1.0251 0.0733 33 1 1.6929 -0.2009 -2.1389 34 1 1.6653 -1.7453 -1.2548 35 1 5.1029 -1.0831 -2.5646 36 1 3.8934 -2.3866 -2.4876 37 1 1.7947 -2.2068 -3.6905 38 1 0.6000 -1.2110 -5.5995 39 1 1.4539 0.8465 -6.6486 40 1 3.4978 1.9129 -5.7834 41 1 4.6872 0.9222 -3.8684 42 1 5.1122 -1.4984 -0.1079 43 1 3.6366 -2.4933 -0.0839 44 1 3.6901 -2.5632 2.4043 45 1 5.1759 -1.5831 2.3990 46 1 3.7616 -1.0504 3.3395 47 1 0.6050 -0.0837 2.5777 48 1 3.0862 1.4708 2.2315 49 1 1.4907 1.9054 1.5727 50 1 0.5762 2.0365 3.8738 51 1 2.1716 1.6019 4.5326 52 1 1.1178 4.4753 6.5799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248397134.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:13 Heat of formation + Delta-G solvation = 13.731925 kcal Electronic energy + Delta-G solvation = -27272.820202 eV Core-core repulsion = 23850.047700 eV Total energy + Delta-G solvation = -3422.772503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25711 -39.07402 -36.24246 -33.66158 -33.36112 -32.26610 -31.10368 -30.89921 -28.78220 -26.96111 -26.37969 -25.30974 -23.92986 -22.82308 -22.14620 -21.12380 -20.98188 -20.50017 -18.62605 -16.94996 -16.36804 -15.92680 -15.76313 -15.54462 -15.27002 -14.88522 -14.56257 -14.23769 -14.15489 -13.85063 -13.57925 -13.33185 -12.97096 -12.82767 -12.55356 -12.49883 -12.35821 -12.19106 -12.07132 -11.77079 -11.64405 -11.47053 -11.21353 -11.14933 -11.03124 -10.95816 -10.61555 -10.52272 -10.49479 -10.36506 -9.98095 -9.72694 -9.28672 -9.09787 -9.06187 -8.98742 -8.30043 -8.29726 -7.63488 -5.94748 -3.96615 1.11497 1.21211 3.35220 3.41347 3.45156 3.48622 4.00995 4.48136 4.49824 4.62852 4.72883 4.79937 4.85956 4.89546 4.99011 5.11371 5.12954 5.23866 5.29321 5.39543 5.41332 5.43073 5.47628 5.54998 5.63478 5.67328 5.71988 5.79025 5.83331 5.84734 5.86640 5.90352 5.98687 6.18880 6.23520 6.26559 6.28001 6.31690 6.36272 6.42449 6.54945 6.56913 6.67240 6.72069 6.79007 7.02641 7.09177 7.13113 7.58881 7.80967 7.89643 8.06176 8.16435 8.50914 9.11222 9.66945 11.16696 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.003133 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.837127 B = 8934.588806 C = 9849.251840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 H 0.086 0.914 4 C 0.065 3.935 5 N -0.532 5.532 6 C 0.094 3.906 7 C -0.080 4.080 8 C -0.114 4.114 9 C -0.123 4.123 10 C -0.122 4.122 11 C -0.121 4.121 12 C -0.098 4.098 13 C 0.063 3.937 14 C -0.080 4.080 15 H 0.083 0.917 16 C -0.135 4.135 17 C 0.099 3.901 18 H 0.066 0.934 19 N -0.681 5.681 20 C 0.063 3.937 21 C 0.028 3.972 22 C -0.519 4.519 23 H 0.053 0.947 24 C 0.058 3.942 25 N -0.894 5.894 26 Si 0.890 3.110 27 H -0.281 1.281 28 H -0.287 1.287 29 H -0.274 1.274 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.073 0.927 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.077 0.923 47 H 0.334 0.666 48 H 0.060 0.940 49 H 0.018 0.982 50 H 0.011 0.989 51 H 0.023 0.977 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 -13.625 -21.278 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 H 0.104 0.896 4 C -0.064 4.064 5 N -0.255 5.255 6 C -0.033 4.033 7 C -0.080 4.080 8 C -0.133 4.133 9 C -0.141 4.141 10 C -0.140 4.140 11 C -0.139 4.139 12 C -0.117 4.117 13 C -0.065 4.065 14 C -0.099 4.099 15 H 0.101 0.899 16 C -0.193 4.193 17 C -0.012 4.012 18 H 0.084 0.916 19 N -0.310 5.310 20 C -0.065 4.065 21 C -0.010 4.010 22 C -0.558 4.558 23 H 0.071 0.929 24 C -0.143 4.143 25 N -0.534 5.534 26 Si 0.718 3.282 27 H -0.208 1.208 28 H -0.213 1.213 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.096 0.904 47 H 0.152 0.848 48 H 0.079 0.921 49 H 0.037 0.963 50 H 0.029 0.971 51 H 0.041 0.959 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.522 -13.295 -20.652 24.813 hybrid contribution -0.754 0.603 -0.768 1.234 sum 2.768 -12.692 -21.421 25.052 Atomic orbital electron populations 1.21769 0.95155 1.01356 1.02079 1.21936 0.95387 1.01944 0.95416 0.89560 1.22196 0.86788 0.98419 0.98954 1.62020 1.08608 1.53792 1.01123 1.21073 0.98967 0.96107 0.87191 1.19777 0.95825 0.95983 0.96451 1.21070 0.95284 1.00077 0.96821 1.21100 0.99910 0.96478 0.96570 1.21153 0.96643 0.96101 1.00129 1.21179 0.95840 0.99921 0.96954 1.21066 1.00168 0.95015 0.95447 1.22196 0.99702 0.94643 0.89942 1.21171 0.95021 1.00808 0.92942 0.89859 1.21652 0.99293 0.99345 0.98983 1.21606 0.94706 0.96766 0.88077 0.91596 1.60714 1.19437 1.14694 1.36143 1.22202 0.99452 0.85111 0.99700 1.19037 0.96571 0.94025 0.91356 1.21199 1.39204 0.95090 1.00258 0.92852 1.24989 0.95353 0.98496 0.95496 1.69975 1.43172 1.35671 1.04542 0.86626 0.78934 0.85415 0.77215 1.20761 1.21256 1.19875 0.91975 0.92864 0.93101 0.90448 0.95566 0.89877 0.94208 0.86495 0.86215 0.86255 0.86066 0.85792 0.90829 0.95164 0.93729 0.93716 0.90445 0.84797 0.92144 0.96333 0.97075 0.95885 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.82 37.16 0.33 -1.55 16 2 C -0.13 -1.75 1.92 -90.54 -0.17 -1.93 16 3 H 0.09 1.44 6.32 -51.93 -0.33 1.11 16 4 C 0.06 0.79 3.87 -3.83 -0.01 0.77 16 5 N -0.53 -6.36 4.80 -236.11 -1.13 -7.50 16 6 C 0.09 0.94 5.43 -4.97 -0.03 0.91 16 7 C -0.08 -0.81 4.11 -104.62 -0.43 -1.24 16 8 C -0.11 -1.08 7.82 -39.58 -0.31 -1.39 16 9 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16 10 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 11 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 12 C -0.10 -0.99 9.70 -39.58 -0.38 -1.38 16 13 C 0.06 0.74 4.71 -3.83 -0.02 0.73 16 14 C -0.08 -1.12 2.23 -90.54 -0.20 -1.32 16 15 H 0.08 1.37 6.33 -51.93 -0.33 1.04 16 16 C -0.13 -1.83 9.07 37.16 0.34 -1.49 16 17 C 0.10 1.43 1.92 -67.59 -0.13 1.30 16 18 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 19 N -0.68 -11.85 5.60 -106.59 -0.60 -12.45 16 20 C 0.06 1.32 4.72 -3.82 -0.02 1.31 16 21 C 0.03 0.72 5.28 -27.88 -0.15 0.58 16 22 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 23 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 24 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 25 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 26 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.06 0.88 7.15 -51.93 -0.37 0.51 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.98 5.65 -51.93 -0.29 0.69 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.04 0.37 8.02 -51.93 -0.42 -0.05 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 1.25 7.68 -51.93 -0.40 0.85 16 47 H 0.33 5.68 7.65 -39.29 -0.30 5.38 16 48 H 0.06 1.30 6.18 -51.93 -0.32 0.98 16 49 H 0.02 0.39 6.46 -51.93 -0.34 0.06 16 50 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -30.23 396.13 -12.24 -42.46 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -9.40 Total: 3.86 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.79 Total: -22.80 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.99 Total: -46.45 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.23 -12.24 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248397134.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.195 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds