Wall clock time and date at job start Tue Mar 31 2020 11:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.53517 * 2 1 4 4 C 1.53039 * 109.55682 * 239.92920 * 2 1 3 5 5 N 1.46848 * 109.57302 * 180.94264 * 4 2 1 6 6 C 1.46900 * 111.00289 * 185.80527 * 5 4 2 7 7 C 1.50703 * 109.46933 * 45.79186 * 6 5 4 8 8 C 1.38236 * 120.00017 * 269.72788 * 7 6 5 9 9 C 1.38239 * 119.99810 * 179.76197 * 8 7 6 10 10 C 1.38226 * 120.00011 * 0.48843 * 9 8 7 11 11 C 1.38240 * 120.00170 * 359.78930 * 10 9 8 12 12 C 1.38228 * 119.99916 * 359.95221 * 11 10 9 13 13 C 1.46855 * 111.19871 * 61.71024 * 5 4 2 14 14 C 1.53041 * 109.52143 * 298.25801 * 13 5 4 15 15 H 1.08999 * 109.50277 * 299.23490 * 14 13 5 16 16 C 1.53002 * 109.50094 * 179.11867 * 14 13 5 17 17 C 1.53116 * 109.50246 * 120.09686 * 2 1 3 18 18 H 1.08997 * 109.52454 * 57.62718 * 17 2 1 19 19 N 1.46901 * 109.52401 * 297.50356 * 17 2 1 20 20 C 1.46910 * 110.99767 * 305.61289 * 19 17 2 21 21 C 1.53004 * 109.47049 * 185.24857 * 20 19 17 22 22 C 1.50699 * 109.47044 * 179.97438 * 21 20 19 23 23 H 1.07997 * 119.99853 * 359.97438 * 22 21 20 24 24 C 1.37877 * 119.99596 * 180.02562 * 22 21 20 25 25 N 1.31510 * 120.00201 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99682 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47145 * 89.99615 * 26 24 22 28 28 H 1.48497 * 109.47299 * 209.99862 * 26 24 22 29 29 H 1.48503 * 109.47294 * 329.99539 * 26 24 22 30 30 H 1.08996 * 109.47313 * 304.09193 * 1 2 3 31 31 H 1.09004 * 109.47134 * 64.09209 * 1 2 3 32 32 H 1.09004 * 109.47037 * 184.08923 * 1 2 3 33 33 H 1.08994 * 109.46818 * 60.89828 * 4 2 1 34 34 H 1.08999 * 109.40697 * 300.95201 * 4 2 1 35 35 H 1.09002 * 109.47452 * 165.79064 * 6 5 4 36 36 H 1.08998 * 109.47353 * 285.79078 * 6 5 4 37 37 H 1.08000 * 120.00009 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99625 * 180.24963 * 9 8 7 39 39 H 1.08001 * 119.99942 * 179.76201 * 10 9 8 40 40 H 1.08004 * 119.99955 * 179.97438 * 11 10 9 41 41 H 1.08000 * 120.00565 * 179.97438 * 12 11 10 42 42 H 1.08998 * 109.46061 * 178.24040 * 13 5 4 43 43 H 1.08997 * 109.45212 * 58.26907 * 13 5 4 44 44 H 1.09005 * 109.46938 * 300.19896 * 16 14 13 45 45 H 1.08999 * 109.47301 * 60.19352 * 16 14 13 46 46 H 1.08996 * 109.46653 * 180.19874 * 16 14 13 47 47 H 1.00900 * 110.99997 * 69.56212 * 19 17 2 48 48 H 1.09000 * 109.46605 * 305.24428 * 20 19 17 49 49 H 1.08993 * 109.46984 * 65.24936 * 20 19 17 50 50 H 1.09001 * 109.47246 * 300.00048 * 21 20 19 51 51 H 1.09005 * 109.47143 * 59.99794 * 21 20 19 52 52 H 0.97002 * 119.99599 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0423 -0.7226 -1.2480 5 7 3.5106 -0.7425 -1.2370 6 6 4.0389 -1.3064 -2.4864 7 6 3.3109 -0.7001 -3.6584 8 6 2.1667 -1.3019 -4.1478 9 6 1.4962 -0.7430 -5.2198 10 6 1.9756 0.4120 -5.8087 11 6 3.1231 1.0107 -5.3229 12 6 3.7905 0.4548 -4.2477 13 6 4.0230 -1.4743 -0.0714 14 6 3.5711 -0.7732 1.2117 15 1 3.9686 0.2416 1.2313 16 6 4.0868 -1.5482 2.4260 17 6 2.0412 -0.7238 1.2487 18 1 1.6443 -1.7387 1.2696 19 7 1.6024 -0.0004 2.4496 20 6 2.0099 1.4099 2.3929 21 6 1.6524 2.0975 3.7122 22 6 2.0711 3.5440 3.6543 23 1 2.5450 3.9338 2.7657 24 6 1.8498 4.3695 4.7363 25 7 1.2731 3.8946 5.8186 26 14 2.3681 6.1627 4.6643 27 1 1.2503 6.9798 4.1277 28 1 2.7141 6.6332 6.0296 29 1 3.5519 6.3007 3.7784 30 1 -0.3634 0.5760 0.8510 31 1 -0.3633 0.4490 -0.9244 32 1 -0.3633 -1.0251 0.0733 33 1 1.6929 -0.2009 -2.1389 34 1 1.6653 -1.7453 -1.2548 35 1 5.1029 -1.0831 -2.5646 36 1 3.8934 -2.3866 -2.4876 37 1 1.7947 -2.2068 -3.6905 38 1 0.6000 -1.2110 -5.5995 39 1 1.4539 0.8465 -6.6486 40 1 3.4978 1.9129 -5.7834 41 1 4.6872 0.9222 -3.8684 42 1 5.1122 -1.4984 -0.1079 43 1 3.6366 -2.4933 -0.0839 44 1 3.6901 -2.5632 2.4043 45 1 5.1759 -1.5831 2.3990 46 1 3.7616 -1.0504 3.3395 47 1 0.6050 -0.0837 2.5777 48 1 3.0862 1.4708 2.2315 49 1 1.4907 1.9054 1.5727 50 1 0.5762 2.0365 3.8738 51 1 2.1716 1.6019 4.5326 52 1 1.1178 4.4753 6.5799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248397134.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:12 Heat of formation + Delta-G solvation = -3.367441 kcal Electronic energy + Delta-G solvation = -27273.561686 eV Core-core repulsion = 23850.047700 eV Total energy + Delta-G solvation = -3423.513987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21416 -39.94697 -37.41457 -35.44169 -34.51025 -33.78406 -31.99431 -31.76788 -30.50830 -27.89418 -27.34342 -26.87232 -25.43763 -23.53606 -23.21773 -22.79730 -21.99135 -21.42859 -19.91524 -18.50907 -17.65406 -17.15497 -16.77691 -16.59856 -16.30671 -16.17418 -15.82983 -15.50711 -15.36841 -14.92555 -14.74201 -14.28117 -14.22926 -13.97008 -13.77357 -13.61671 -13.48577 -13.30451 -13.24593 -13.04852 -12.94620 -12.86337 -12.59514 -12.42261 -12.41170 -12.17849 -11.92737 -11.85765 -11.65815 -11.54515 -11.44255 -11.29160 -11.15895 -11.04175 -10.54602 -9.78614 -9.71231 -9.16339 -9.09740 -8.19486 -6.30441 0.42274 0.52569 1.39196 1.40765 1.52052 2.40699 2.73888 3.13726 3.17545 3.40678 3.71942 3.73865 3.92533 3.97116 4.04840 4.13361 4.17991 4.29192 4.36285 4.41359 4.45034 4.49998 4.58955 4.62563 4.63681 4.66865 4.69690 4.73303 4.80306 4.81105 4.85532 4.87857 4.91090 5.09750 5.12852 5.16846 5.18229 5.21042 5.26633 5.30904 5.45840 5.53629 5.55079 5.57720 5.64614 5.71376 5.72701 5.82202 6.10178 6.13620 6.17882 6.21813 6.35258 6.63161 6.87222 7.38567 8.92619 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.003133 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.837127 B = 8934.588806 C = 9849.251840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 H 0.053 0.947 4 C 0.076 3.924 5 N -0.548 5.548 6 C 0.098 3.902 7 C -0.092 4.092 8 C -0.121 4.121 9 C -0.129 4.129 10 C -0.129 4.129 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.071 3.929 14 C -0.079 4.079 15 H 0.052 0.948 16 C -0.129 4.129 17 C 0.102 3.898 18 H 0.084 0.916 19 N -0.683 5.683 20 C 0.091 3.909 21 C 0.037 3.963 22 C -0.543 4.543 23 H 0.055 0.945 24 C 0.002 3.998 25 N -0.931 5.931 26 Si 0.963 3.037 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.265 1.265 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.337 0.663 48 H 0.053 0.947 49 H 0.016 0.984 50 H -0.012 1.012 51 H -0.008 1.008 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -14.327 -23.235 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.142 4.142 3 H 0.071 0.929 4 C -0.052 4.052 5 N -0.272 5.272 6 C -0.029 4.029 7 C -0.092 4.092 8 C -0.139 4.139 9 C -0.147 4.147 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.134 4.134 13 C -0.057 4.057 14 C -0.099 4.099 15 H 0.071 0.929 16 C -0.187 4.187 17 C -0.008 4.008 18 H 0.102 0.898 19 N -0.312 5.312 20 C -0.038 4.038 21 C -0.001 4.001 22 C -0.581 4.581 23 H 0.074 0.926 24 C -0.196 4.196 25 N -0.571 5.571 26 Si 0.788 3.212 27 H -0.197 1.197 28 H -0.206 1.206 29 H -0.189 1.189 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.155 0.845 48 H 0.071 0.929 49 H 0.034 0.966 50 H 0.006 0.994 51 H 0.010 0.990 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.693 -14.013 -22.630 26.872 hybrid contribution -0.822 0.788 -0.174 1.152 sum 2.872 -13.224 -22.803 26.517 Atomic orbital electron populations 1.21727 0.94329 1.02265 1.01606 1.21829 0.96060 1.00151 0.96140 0.92851 1.22034 0.87112 0.98636 0.97461 1.61965 1.08459 1.54697 1.02052 1.21074 0.99114 0.96629 0.86086 1.19867 0.96373 0.96258 0.96745 1.21244 0.95116 1.00462 0.97103 1.21402 1.00462 0.96482 0.96304 1.21459 0.96501 0.96119 1.00589 1.21429 0.96133 1.00509 0.96882 1.21222 1.00602 0.95464 0.96119 1.22096 1.00366 0.94749 0.88496 1.21131 0.94456 0.99556 0.94710 0.92935 1.21574 1.00213 0.99687 0.97216 1.21698 0.95224 0.96950 0.86936 0.89842 1.60609 1.19700 1.12516 1.38420 1.21690 0.98777 0.86878 0.96425 1.18876 0.94478 0.93727 0.93019 1.21601 1.39499 0.96425 1.00595 0.92649 1.25934 0.95106 1.03574 0.94938 1.70106 1.44067 1.37613 1.05313 0.85474 0.78945 0.79215 0.77584 1.19700 1.20558 1.18895 0.93922 0.92114 0.91203 0.90774 0.94234 0.89398 0.93010 0.85493 0.84320 0.84366 0.84783 0.85850 0.89754 0.93690 0.92029 0.92413 0.93625 0.84494 0.92889 0.96635 0.99369 0.98997 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.82 71.98 0.64 -2.87 16 2 C -0.12 -3.29 1.92 -10.74 -0.02 -3.31 16 3 H 0.05 1.81 6.32 -2.39 -0.02 1.80 16 4 C 0.08 1.72 3.87 86.33 0.33 2.05 16 5 N -0.55 -12.23 4.80 -900.90 -4.33 -16.56 16 6 C 0.10 1.76 5.43 85.56 0.46 2.23 16 7 C -0.09 -1.74 4.11 -19.86 -0.08 -1.82 16 8 C -0.12 -2.05 7.82 22.27 0.17 -1.87 16 9 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 10 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 11 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 12 C -0.12 -2.23 9.70 22.27 0.22 -2.02 16 13 C 0.07 1.52 4.71 86.33 0.41 1.93 16 14 C -0.08 -2.17 2.23 -10.74 -0.02 -2.19 16 15 H 0.05 1.77 6.33 -2.39 -0.02 1.76 16 16 C -0.13 -3.40 9.07 71.98 0.65 -2.75 16 17 C 0.10 2.88 1.92 44.99 0.09 2.96 16 18 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 19 N -0.68 -24.32 5.60 -491.14 -2.75 -27.07 16 20 C 0.09 3.97 4.72 86.30 0.41 4.38 16 21 C 0.04 2.01 5.28 29.85 0.16 2.16 16 22 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 23 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 24 C 0.00 0.14 5.46 84.66 0.46 0.60 16 25 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 26 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 28 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 29 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 30 H 0.04 1.21 7.15 -2.39 -0.02 1.19 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.76 5.65 -2.39 -0.01 1.75 16 34 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 36 H 0.05 0.82 8.02 -2.39 -0.02 0.80 16 37 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.08 1.65 8.12 -2.39 -0.02 1.63 16 43 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.04 1.49 7.68 -2.39 -0.02 1.47 16 47 H 0.34 11.69 7.65 -89.69 -0.69 11.01 16 48 H 0.05 2.38 6.18 -2.39 -0.01 2.37 16 49 H 0.02 0.68 6.46 -2.39 -0.02 0.67 16 50 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 51 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 52 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -66.45 396.13 0.19 -66.26 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.18 Total: 25.55 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 4.77 Total: -37.93 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -6.79 Total: -101.30 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -66.45 0.19 -66.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248397134.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.896 kcal (2) G-P(sol) polarization free energy of solvation -66.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds