Wall clock time and date at job start Tue Mar 31 2020 11:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46321 * 2 1 4 4 C 1.53039 * 109.46038 * 240.02473 * 2 1 3 5 5 C 1.53126 * 109.27886 * 299.16513 * 4 2 1 6 6 H 1.09001 * 109.51955 * 62.31086 * 5 4 2 7 7 N 1.46895 * 109.52205 * 182.44179 * 5 4 2 8 8 C 1.46904 * 111.00014 * 204.99904 * 7 5 4 9 9 C 1.52997 * 109.46983 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.47000 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47211 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27574 * 11 10 9 14 14 N 1.31523 * 119.99908 * 179.72112 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 359.71709 * 13 11 10 16 16 H 1.48500 * 109.47210 * 90.00069 * 15 13 11 17 17 H 1.48504 * 109.47424 * 210.00300 * 15 13 11 18 18 H 1.48502 * 109.46888 * 330.00390 * 15 13 11 19 19 C 1.53118 * 109.15602 * 302.34661 * 5 4 2 20 20 C 1.53034 * 109.28347 * 57.65315 * 19 5 4 21 21 N 1.46842 * 109.46076 * 119.97209 * 2 1 3 22 22 C 1.46901 * 111.00389 * 294.17301 * 21 2 1 23 23 C 1.50692 * 109.47023 * 170.00373 * 22 21 2 24 24 C 1.38238 * 119.99879 * 269.72412 * 23 22 21 25 25 C 1.38241 * 119.99781 * 179.74878 * 24 23 22 26 26 C 1.38238 * 119.99845 * 0.53008 * 25 24 23 27 27 C 1.38226 * 120.00023 * 359.74719 * 26 25 24 28 28 C 1.38232 * 120.00210 * 90.00439 * 23 22 21 29 29 H 1.09000 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47069 * 299.97356 * 1 2 3 31 31 H 1.08998 * 109.47534 * 59.97106 * 1 2 3 32 32 H 1.08999 * 109.50198 * 179.21764 * 4 2 1 33 33 H 1.09004 * 109.53470 * 59.12291 * 4 2 1 34 34 H 1.00901 * 111.00513 * 81.03856 * 7 5 4 35 35 H 1.08995 * 109.46789 * 59.99756 * 8 7 5 36 36 H 1.08998 * 109.46713 * 300.00198 * 8 7 5 37 37 H 1.09000 * 109.47849 * 59.99743 * 9 8 7 38 38 H 1.09007 * 109.47288 * 299.99336 * 9 8 7 39 39 H 1.09000 * 109.47211 * 59.99130 * 10 9 8 40 40 H 1.09007 * 109.46376 * 299.99672 * 10 9 8 41 41 H 0.96995 * 120.00181 * 179.97438 * 14 13 11 42 42 H 1.09001 * 109.50060 * 177.60097 * 19 5 4 43 43 H 1.09002 * 109.50212 * 297.71249 * 19 5 4 44 44 H 1.08999 * 109.46521 * 180.80007 * 20 19 5 45 45 H 1.09008 * 109.45148 * 60.83028 * 20 19 5 46 46 H 1.08998 * 109.47014 * 290.00413 * 22 21 2 47 47 H 1.08998 * 109.46729 * 50.00181 * 22 21 2 48 48 H 1.07993 * 120.00089 * 0.02562 * 24 23 22 49 49 H 1.07999 * 119.99714 * 180.29716 * 25 24 23 50 50 H 1.07995 * 119.99445 * 179.77212 * 26 25 24 51 51 H 1.08004 * 120.00151 * 180.02562 * 27 26 25 52 52 H 1.07999 * 120.00177 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 1.5442 -2.1697 -1.2356 6 1 0.4547 -2.1822 -1.2682 7 7 2.0787 -2.8830 -2.4032 8 6 1.2177 -4.0162 -2.7673 9 6 1.8059 -4.7332 -3.9842 10 6 0.9088 -5.9131 -4.3638 11 6 1.4885 -6.6197 -5.5621 12 1 2.4048 -6.2626 -6.0085 13 6 0.8457 -7.7181 -6.0922 14 7 1.3486 -8.3315 -7.1413 15 14 -0.7395 -8.3354 -5.3204 16 1 -1.8972 -7.6600 -5.9599 17 1 -0.8494 -9.8026 -5.5215 18 1 -0.7321 -8.0341 -3.8663 19 6 2.0268 -2.8531 0.0468 20 6 1.5174 -2.0704 1.2591 21 7 2.0192 -0.6917 1.1994 22 6 1.6652 0.0507 2.4166 23 6 1.9608 -0.7979 3.6263 24 6 0.9869 -1.6349 4.1381 25 6 1.2598 -2.4172 5.2447 26 6 2.5029 -2.3543 5.8461 27 6 3.4748 -1.5130 5.3377 28 6 3.2038 -0.7350 4.2277 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 3.1298 -0.7092 -1.2577 33 1 1.6642 -0.2166 -2.1403 34 1 3.0265 -3.1873 -2.2384 35 1 0.2192 -3.6513 -3.0076 36 1 1.1587 -4.7114 -1.9298 37 1 2.8044 -5.0981 -3.7435 38 1 1.8652 -4.0382 -4.8219 39 1 -0.0895 -5.5478 -4.6046 40 1 0.8491 -6.6082 -3.5263 41 1 0.8966 -9.1045 -7.5141 42 1 1.6414 -3.8721 0.0832 43 1 3.1165 -2.8750 0.0595 44 1 1.8712 -2.5464 2.1736 45 1 0.4274 -2.0607 1.2531 46 1 2.2502 0.9690 2.4651 47 1 0.6035 0.2969 2.3960 48 1 0.0144 -1.6810 3.6707 49 1 0.5005 -3.0747 5.6416 50 1 2.7148 -2.9627 6.7128 51 1 4.4462 -1.4642 5.8073 52 1 3.9633 -0.0780 3.8303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268957195.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:04 Heat of formation + Delta-G solvation = 15.620003 kcal Electronic energy + Delta-G solvation = -26320.669491 eV Core-core repulsion = 22897.978862 eV Total energy + Delta-G solvation = -3422.690629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52991 -39.10503 -36.55334 -34.19361 -33.01719 -31.99638 -31.33023 -31.07304 -29.87912 -27.79485 -26.47839 -25.40917 -23.38959 -22.70199 -22.54439 -21.77641 -21.14634 -20.10159 -18.76412 -17.11184 -16.77227 -16.56238 -15.90088 -15.62877 -15.20367 -15.09380 -14.79304 -14.23898 -14.16507 -14.02165 -13.77215 -13.67516 -13.53408 -13.29374 -12.91031 -12.66484 -12.52713 -12.36362 -12.16612 -12.00117 -11.79974 -11.70514 -11.47273 -11.32394 -11.15591 -11.00223 -10.95212 -10.79974 -10.62132 -10.34140 -9.91983 -9.69103 -9.50110 -9.22129 -9.13796 -9.12676 -8.50736 -8.44240 -8.12506 -6.01066 -3.98559 0.99083 1.08797 3.32261 3.34966 3.39275 3.43147 3.83420 4.28224 4.35592 4.47727 4.50465 4.61374 4.68902 4.75015 4.83356 4.88406 4.91540 5.00704 5.09160 5.16693 5.22919 5.28387 5.32712 5.32862 5.38396 5.43679 5.56620 5.58582 5.67453 5.70556 5.72477 5.77604 5.78965 5.90447 5.91306 5.96468 6.12040 6.17155 6.19918 6.21710 6.25316 6.30571 6.60272 6.63104 6.66310 6.83063 6.90037 6.95864 7.28703 7.39149 7.48180 7.64440 7.83812 8.58572 9.04741 9.61656 11.12559 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.002300 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.623806 B =12170.420820 C =12962.145161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.082 3.918 3 H 0.083 0.917 4 C -0.096 4.096 5 C 0.085 3.915 6 H 0.073 0.927 7 N -0.685 5.685 8 C 0.058 3.942 9 C -0.099 4.099 10 C -0.013 4.013 11 C -0.518 4.518 12 H 0.072 0.928 13 C 0.064 3.936 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.146 4.146 20 C 0.053 3.947 21 N -0.523 5.523 22 C 0.089 3.911 23 C -0.081 4.081 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.100 4.100 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.340 0.660 35 H 0.064 0.936 36 H 0.023 0.977 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.010 0.990 40 H 0.013 0.987 41 H 0.262 0.738 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.035 0.965 46 H 0.083 0.917 47 H 0.047 0.953 48 H 0.117 0.883 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 19.409 26.972 33.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.027 4.027 3 H 0.101 0.899 4 C -0.135 4.135 5 C -0.025 4.025 6 H 0.091 0.909 7 N -0.314 5.314 8 C -0.071 4.071 9 C -0.137 4.137 10 C -0.051 4.051 11 C -0.556 4.556 12 H 0.090 0.910 13 C -0.137 4.137 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.191 1.191 19 C -0.185 4.185 20 C -0.075 4.075 21 N -0.247 5.247 22 C -0.038 4.038 23 C -0.081 4.081 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.118 4.118 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.101 0.899 47 H 0.065 0.935 48 H 0.135 0.865 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.489 19.665 26.324 32.862 hybrid contribution -1.570 -1.168 1.109 2.250 sum -1.081 18.497 27.433 33.104 Atomic orbital electron populations 1.22531 0.97761 1.02574 1.02138 1.21713 0.92677 0.98070 0.90223 0.89893 1.21548 1.01563 0.94584 0.95783 1.21652 0.99126 0.93763 0.87968 0.90864 1.60617 1.06021 1.28444 1.36368 1.22156 0.96776 0.90506 0.97669 1.21441 0.99247 0.97480 0.95572 1.19543 0.95164 0.93480 0.96885 1.21161 1.10500 1.12034 1.11871 0.91014 1.25049 0.97482 0.96432 0.94690 1.69923 1.40063 1.21381 1.23051 0.86764 0.84195 0.77816 0.80403 1.20326 1.21444 1.19120 1.22335 1.01996 0.98914 0.95260 1.22164 0.97359 0.88867 0.99112 1.62314 1.59254 1.02130 1.01012 1.21133 0.99617 0.95954 0.87138 1.19769 0.94222 0.97748 0.96371 1.21088 0.99053 0.96560 0.96588 1.21133 0.97175 0.99391 0.96250 1.21167 0.93719 0.98996 1.00088 1.21177 0.99301 0.96744 0.96701 1.21045 0.96142 0.99250 0.95404 0.91878 0.92783 0.91650 0.91079 0.90795 0.84236 0.91753 0.95908 0.93044 0.91998 0.97133 0.96919 0.92806 0.91712 0.90998 0.90315 0.94659 0.89907 0.93525 0.86455 0.86134 0.86203 0.86081 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 8.20 37.16 0.30 -1.28 16 2 C 0.08 0.72 2.93 -67.72 -0.20 0.52 16 3 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 4 C -0.10 -0.99 5.22 -26.65 -0.14 -1.13 16 5 C 0.09 1.00 2.23 -67.59 -0.15 0.85 16 6 H 0.07 0.91 6.22 -51.93 -0.32 0.59 16 7 N -0.69 -9.66 6.25 -106.60 -0.67 -10.33 16 8 C 0.06 0.95 5.49 -3.82 -0.02 0.93 16 9 C -0.10 -2.01 5.41 -26.73 -0.14 -2.16 16 10 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 11 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 12 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 13 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 14 N -0.90 -28.42 13.96 55.43 0.77 -27.64 16 15 Si 0.88 22.13 27.46 -169.99 -4.67 17.46 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.27 -6.43 6.55 56.52 0.37 -6.06 16 19 C -0.15 -1.61 5.35 -26.65 -0.14 -1.76 16 20 C 0.05 0.52 4.29 -3.84 -0.02 0.51 16 21 N -0.52 -4.75 4.75 -228.13 -1.08 -5.83 16 22 C 0.09 0.69 5.30 -4.98 -0.03 0.67 16 23 C -0.08 -0.67 4.11 -104.63 -0.43 -1.10 16 24 C -0.11 -0.93 7.82 -39.58 -0.31 -1.24 16 25 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 26 C -0.12 -0.91 10.05 -39.59 -0.40 -1.30 16 27 C -0.12 -0.92 10.05 -39.59 -0.40 -1.31 16 28 C -0.10 -0.81 9.70 -39.58 -0.38 -1.19 16 29 H 0.06 0.59 4.80 -51.93 -0.25 0.34 16 30 H 0.05 0.40 6.35 -51.93 -0.33 0.07 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.34 4.64 8.45 -39.29 -0.33 4.30 16 35 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 36 H 0.02 0.37 7.51 -51.93 -0.39 -0.02 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.01 0.25 7.56 -51.93 -0.39 -0.14 16 40 H 0.01 0.31 7.21 -51.93 -0.37 -0.07 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.06 0.77 7.54 -51.93 -0.39 0.38 16 43 H 0.07 0.84 8.10 -51.93 -0.42 0.41 16 44 H 0.08 0.82 5.65 -51.93 -0.29 0.53 16 45 H 0.04 0.35 6.19 -51.92 -0.32 0.03 16 46 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 47 H 0.05 0.35 6.01 -51.93 -0.31 0.04 16 48 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 50 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 51 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 52 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -31.02 391.70 -12.34 -43.36 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -9.20 Total: 1.48 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -3.39 Total: -24.40 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.98 Total: -43.80 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.02 -12.34 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268957195.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.976 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds