Wall clock time and date at job start Tue Mar 31 2020 11:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46321 * 2 1 4 4 C 1.53039 * 109.46038 * 240.02473 * 2 1 3 5 5 C 1.53126 * 109.27886 * 299.16513 * 4 2 1 6 6 H 1.09001 * 109.51955 * 62.31086 * 5 4 2 7 7 N 1.46895 * 109.52205 * 182.44179 * 5 4 2 8 8 C 1.46904 * 111.00014 * 204.99904 * 7 5 4 9 9 C 1.52997 * 109.46983 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.47000 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47211 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27574 * 11 10 9 14 14 N 1.31523 * 119.99908 * 179.72112 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 359.71709 * 13 11 10 16 16 H 1.48500 * 109.47210 * 90.00069 * 15 13 11 17 17 H 1.48504 * 109.47424 * 210.00300 * 15 13 11 18 18 H 1.48502 * 109.46888 * 330.00390 * 15 13 11 19 19 C 1.53118 * 109.15602 * 302.34661 * 5 4 2 20 20 C 1.53034 * 109.28347 * 57.65315 * 19 5 4 21 21 N 1.46842 * 109.46076 * 119.97209 * 2 1 3 22 22 C 1.46901 * 111.00389 * 294.17301 * 21 2 1 23 23 C 1.50692 * 109.47023 * 170.00373 * 22 21 2 24 24 C 1.38238 * 119.99879 * 269.72412 * 23 22 21 25 25 C 1.38241 * 119.99781 * 179.74878 * 24 23 22 26 26 C 1.38238 * 119.99845 * 0.53008 * 25 24 23 27 27 C 1.38226 * 120.00023 * 359.74719 * 26 25 24 28 28 C 1.38232 * 120.00210 * 90.00439 * 23 22 21 29 29 H 1.09000 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47069 * 299.97356 * 1 2 3 31 31 H 1.08998 * 109.47534 * 59.97106 * 1 2 3 32 32 H 1.08999 * 109.50198 * 179.21764 * 4 2 1 33 33 H 1.09004 * 109.53470 * 59.12291 * 4 2 1 34 34 H 1.00901 * 111.00513 * 81.03856 * 7 5 4 35 35 H 1.08995 * 109.46789 * 59.99756 * 8 7 5 36 36 H 1.08998 * 109.46713 * 300.00198 * 8 7 5 37 37 H 1.09000 * 109.47849 * 59.99743 * 9 8 7 38 38 H 1.09007 * 109.47288 * 299.99336 * 9 8 7 39 39 H 1.09000 * 109.47211 * 59.99130 * 10 9 8 40 40 H 1.09007 * 109.46376 * 299.99672 * 10 9 8 41 41 H 0.96995 * 120.00181 * 179.97438 * 14 13 11 42 42 H 1.09001 * 109.50060 * 177.60097 * 19 5 4 43 43 H 1.09002 * 109.50212 * 297.71249 * 19 5 4 44 44 H 1.08999 * 109.46521 * 180.80007 * 20 19 5 45 45 H 1.09008 * 109.45148 * 60.83028 * 20 19 5 46 46 H 1.08998 * 109.47014 * 290.00413 * 22 21 2 47 47 H 1.08998 * 109.46729 * 50.00181 * 22 21 2 48 48 H 1.07993 * 120.00089 * 0.02562 * 24 23 22 49 49 H 1.07999 * 119.99714 * 180.29716 * 25 24 23 50 50 H 1.07995 * 119.99445 * 179.77212 * 26 25 24 51 51 H 1.08004 * 120.00151 * 180.02562 * 27 26 25 52 52 H 1.07999 * 120.00177 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 1.5442 -2.1697 -1.2356 6 1 0.4547 -2.1822 -1.2682 7 7 2.0787 -2.8830 -2.4032 8 6 1.2177 -4.0162 -2.7673 9 6 1.8059 -4.7332 -3.9842 10 6 0.9088 -5.9131 -4.3638 11 6 1.4885 -6.6197 -5.5621 12 1 2.4048 -6.2626 -6.0085 13 6 0.8457 -7.7181 -6.0922 14 7 1.3486 -8.3315 -7.1413 15 14 -0.7395 -8.3354 -5.3204 16 1 -1.8972 -7.6600 -5.9599 17 1 -0.8494 -9.8026 -5.5215 18 1 -0.7321 -8.0341 -3.8663 19 6 2.0268 -2.8531 0.0468 20 6 1.5174 -2.0704 1.2591 21 7 2.0192 -0.6917 1.1994 22 6 1.6652 0.0507 2.4166 23 6 1.9608 -0.7979 3.6263 24 6 0.9869 -1.6349 4.1381 25 6 1.2598 -2.4172 5.2447 26 6 2.5029 -2.3543 5.8461 27 6 3.4748 -1.5130 5.3377 28 6 3.2038 -0.7350 4.2277 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 3.1298 -0.7092 -1.2577 33 1 1.6642 -0.2166 -2.1403 34 1 3.0265 -3.1873 -2.2384 35 1 0.2192 -3.6513 -3.0076 36 1 1.1587 -4.7114 -1.9298 37 1 2.8044 -5.0981 -3.7435 38 1 1.8652 -4.0382 -4.8219 39 1 -0.0895 -5.5478 -4.6046 40 1 0.8491 -6.6082 -3.5263 41 1 0.8966 -9.1045 -7.5141 42 1 1.6414 -3.8721 0.0832 43 1 3.1165 -2.8750 0.0595 44 1 1.8712 -2.5464 2.1736 45 1 0.4274 -2.0607 1.2531 46 1 2.2502 0.9690 2.4651 47 1 0.6035 0.2969 2.3960 48 1 0.0144 -1.6810 3.6707 49 1 0.5005 -3.0747 5.6416 50 1 2.7148 -2.9627 6.7128 51 1 4.4462 -1.4642 5.8073 52 1 3.9633 -0.0780 3.8303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268957195.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:03 Heat of formation + Delta-G solvation = -2.674953 kcal Electronic energy + Delta-G solvation = -26321.462820 eV Core-core repulsion = 22897.978862 eV Total energy + Delta-G solvation = -3423.483958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23845 -39.77142 -37.69026 -35.74024 -34.32926 -33.33122 -32.25647 -31.73005 -30.96481 -28.78052 -27.76367 -26.34697 -24.14281 -24.03797 -23.27469 -22.82797 -21.97862 -21.67122 -19.61900 -18.87707 -17.70087 -17.42169 -16.63627 -16.46674 -16.37483 -16.19202 -15.86737 -15.46173 -15.33898 -14.93673 -14.77194 -14.67134 -14.35972 -14.22864 -14.09899 -13.81792 -13.55116 -13.46399 -13.27283 -13.03365 -12.78630 -12.76139 -12.54914 -12.49794 -12.28784 -11.94971 -11.88938 -11.81678 -11.78436 -11.57880 -11.52855 -11.40770 -11.31362 -10.95456 -10.76786 -9.79130 -9.71732 -9.25181 -9.11553 -8.29692 -6.33998 0.42236 0.52192 1.35091 1.37138 1.49343 2.35926 2.74422 3.05279 3.16890 3.21077 3.73087 3.79159 3.96472 3.97611 4.09664 4.16773 4.17255 4.22703 4.28304 4.29866 4.35407 4.41524 4.50070 4.54144 4.57804 4.63497 4.66016 4.71709 4.76507 4.83619 4.85063 4.87119 4.97881 5.03689 5.07060 5.10789 5.12227 5.15602 5.18308 5.19975 5.29834 5.44954 5.52087 5.57805 5.61332 5.64781 5.66164 5.71616 6.10577 6.13112 6.17039 6.20893 6.29985 6.50522 6.74264 7.30456 8.87351 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.002300 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.623806 B =12170.420820 C =12962.145161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.095 0.905 4 C -0.091 4.091 5 C 0.089 3.911 6 H 0.071 0.929 7 N -0.689 5.689 8 C 0.072 3.928 9 C -0.090 4.090 10 C -0.010 4.010 11 C -0.533 4.533 12 H 0.029 0.971 13 C 0.000 4.000 14 N -0.953 5.953 15 Si 0.955 3.045 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.246 1.246 19 C -0.140 4.140 20 C 0.062 3.938 21 N -0.529 5.529 22 C 0.092 3.908 23 C -0.090 4.090 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.130 4.130 27 C -0.130 4.130 28 C -0.112 4.112 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.342 0.658 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.266 0.734 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.037 0.963 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.122 0.878 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 20.313 29.302 35.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.023 4.023 3 H 0.113 0.887 4 C -0.130 4.130 5 C -0.021 4.021 6 H 0.089 0.911 7 N -0.319 5.319 8 C -0.057 4.057 9 C -0.129 4.129 10 C -0.048 4.048 11 C -0.571 4.571 12 H 0.047 0.953 13 C -0.196 4.196 14 N -0.594 5.594 15 Si 0.778 3.222 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.170 1.170 19 C -0.180 4.180 20 C -0.066 4.066 21 N -0.253 5.253 22 C -0.035 4.035 23 C -0.091 4.091 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.148 4.148 27 C -0.148 4.148 28 C -0.130 4.130 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.160 0.840 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.055 0.945 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.140 0.860 49 H 0.152 0.848 50 H 0.154 0.846 51 H 0.154 0.846 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.928 20.597 28.671 35.315 hybrid contribution -1.009 -1.421 0.349 1.777 sum -1.937 19.177 29.020 34.838 Atomic orbital electron populations 1.22482 0.97211 1.02070 1.02792 1.21687 0.93031 0.98300 0.89279 0.88659 1.21488 1.01115 0.93665 0.96688 1.21672 0.98883 0.94312 0.87226 0.91119 1.60580 1.05915 1.27445 1.37975 1.21875 0.96819 0.91071 0.95932 1.21265 0.98472 0.96169 0.96951 1.19488 0.95888 0.94547 0.94837 1.21519 1.09389 1.12716 1.13525 0.95252 1.26087 1.01765 0.96604 0.95165 1.70082 1.42184 1.22206 1.24881 0.85593 0.78961 0.77284 0.80395 1.19061 1.20901 1.16970 1.22249 1.01492 0.98653 0.95559 1.22024 0.97325 0.89243 0.98054 1.62290 1.59464 1.01884 1.01656 1.21146 1.00079 0.95949 0.86328 1.19871 0.94450 0.98072 0.96671 1.21226 0.99322 0.96773 0.96927 1.21386 0.97759 0.99554 0.96245 1.21448 0.93636 0.99106 1.00605 1.21441 1.00125 0.96540 0.96645 1.21234 0.96359 0.99656 0.95780 0.92896 0.91775 0.91384 0.91715 0.91032 0.83979 0.91478 0.95355 0.93595 0.93291 0.96327 0.96297 0.92495 0.92497 0.91644 0.90812 0.94466 0.89064 0.92992 0.86018 0.84841 0.84577 0.84560 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 8.20 71.98 0.59 -2.11 16 2 C 0.09 1.33 2.93 44.94 0.13 1.46 16 3 H 0.10 1.29 8.12 -2.39 -0.02 1.27 16 4 C -0.09 -1.75 5.22 30.65 0.16 -1.59 16 5 C 0.09 1.96 2.23 45.00 0.10 2.06 16 6 H 0.07 1.63 6.22 -2.39 -0.01 1.62 16 7 N -0.69 -18.70 6.25 -491.16 -3.07 -21.77 16 8 C 0.07 2.28 5.49 86.30 0.47 2.76 16 9 C -0.09 -3.64 5.41 30.59 0.17 -3.48 16 10 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 11 C -0.53 -31.80 9.66 25.60 0.25 -31.56 16 12 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 13 C 0.00 0.01 5.47 84.65 0.46 0.47 16 14 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 15 Si 0.95 45.06 27.46 68.60 1.88 46.94 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.25 -10.74 6.55 99.48 0.65 -10.09 16 19 C -0.14 -2.94 5.35 30.65 0.16 -2.77 16 20 C 0.06 1.13 4.29 86.33 0.37 1.50 16 21 N -0.53 -8.67 4.75 -875.68 -4.16 -12.82 16 22 C 0.09 1.26 5.30 85.55 0.45 1.72 16 23 C -0.09 -1.38 4.11 -19.87 -0.08 -1.46 16 24 C -0.12 -1.85 7.82 22.27 0.17 -1.68 16 25 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 26 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 27 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 28 C -0.11 -1.66 9.70 22.27 0.22 -1.45 16 29 H 0.05 0.88 4.80 -2.39 -0.01 0.87 16 30 H 0.06 0.80 6.35 -2.38 -0.02 0.79 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.34 9.06 8.45 -89.69 -0.76 8.31 16 35 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 36 H 0.03 0.87 7.51 -2.39 -0.02 0.85 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.02 0.86 7.56 -2.39 -0.02 0.84 16 40 H 0.02 0.88 7.21 -2.38 -0.02 0.86 16 41 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.06 1.28 7.54 -2.39 -0.02 1.26 16 43 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 44 H 0.07 1.45 5.65 -2.39 -0.01 1.43 16 45 H 0.04 0.67 6.19 -2.38 -0.01 0.65 16 46 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 47 H 0.05 0.67 6.01 -2.39 -0.01 0.65 16 48 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 49 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 50 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 51 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 52 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -67.06 391.70 -0.56 -67.62 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.07 Total: 22.04 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 4.42 Total: -41.17 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -6.93 Total: -95.43 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -67.06 -0.56 -67.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268957195.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.944 kcal (2) G-P(sol) polarization free energy of solvation -67.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds