Wall clock time and date at job start Tue Mar 31 2020 11:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46088 * 2 1 4 4 C 1.53031 * 109.45267 * 119.97008 * 2 1 3 5 5 C 1.53117 * 109.27961 * 60.83506 * 4 2 1 6 6 H 1.09007 * 109.52265 * 297.68877 * 5 4 2 7 7 N 1.46898 * 109.52585 * 177.56078 * 5 4 2 8 8 C 1.46900 * 111.00161 * 154.99958 * 7 5 4 9 9 C 1.52995 * 109.47123 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.47224 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47316 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99726 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00166 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99746 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99996 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47550 * 59.99928 * 15 13 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47181 * 299.99879 * 15 13 11 19 19 C 1.53119 * 109.16187 * 57.65104 * 5 4 2 20 20 C 1.53038 * 109.27745 * 302.35167 * 19 5 4 21 21 N 1.46840 * 109.52548 * 59.17587 * 20 19 5 22 22 C 1.46904 * 111.00212 * 174.16164 * 21 20 19 23 23 C 1.50701 * 109.46874 * 294.21108 * 22 21 20 24 24 C 1.38235 * 119.99808 * 89.99842 * 23 22 21 25 25 C 1.38243 * 119.99602 * 179.97438 * 24 23 22 26 26 C 1.38231 * 120.00070 * 0.07188 * 25 24 23 27 27 C 1.38234 * 119.99869 * 359.88510 * 26 25 24 28 28 C 1.38230 * 119.99865 * 269.97587 * 23 22 21 29 29 H 1.08998 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47159 * 299.98131 * 1 2 3 31 31 H 1.09002 * 109.46794 * 59.97925 * 1 2 3 32 32 H 1.09000 * 109.50429 * 180.77623 * 4 2 1 33 33 H 1.09007 * 109.50757 * 300.85442 * 4 2 1 34 34 H 1.00901 * 110.99866 * 31.04492 * 7 5 4 35 35 H 1.09001 * 109.47358 * 300.00083 * 8 7 5 36 36 H 1.09003 * 109.47186 * 60.00035 * 8 7 5 37 37 H 1.08993 * 109.47534 * 299.99865 * 9 8 7 38 38 H 1.09004 * 109.47247 * 60.00138 * 9 8 7 39 39 H 1.09001 * 109.46983 * 300.00172 * 10 9 8 40 40 H 1.09004 * 109.46844 * 59.99955 * 10 9 8 41 41 H 0.96996 * 119.99612 * 179.97438 * 14 13 11 42 42 H 1.08998 * 109.50433 * 62.28709 * 19 5 4 43 43 H 1.08999 * 109.50473 * 182.37137 * 19 5 4 44 44 H 1.09007 * 109.46172 * 299.15956 * 20 19 5 45 45 H 1.08997 * 109.46139 * 179.19533 * 20 19 5 46 46 H 1.08993 * 109.47642 * 174.20672 * 22 21 20 47 47 H 1.09001 * 109.46800 * 54.20443 * 22 21 20 48 48 H 1.08000 * 120.00616 * 359.70324 * 24 23 22 49 49 H 1.08001 * 119.99556 * 179.97438 * 25 24 23 50 50 H 1.08005 * 119.99882 * 180.02562 * 26 25 24 51 51 H 1.08007 * 119.99474 * 180.10845 * 27 26 25 52 52 H 1.08001 * 120.00350 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7208 1.2500 5 6 1.5439 -2.1694 1.2357 6 1 0.4544 -2.1819 1.2683 7 7 2.0781 -2.8828 2.4035 8 6 1.2170 -4.0159 2.7676 9 6 1.8050 -4.7328 3.9846 10 6 0.9077 -5.9126 4.3642 11 6 1.4865 -6.6183 5.5634 12 1 2.4024 -6.2609 6.0103 13 6 0.8462 -7.7197 6.0906 14 7 -0.2695 -8.1547 5.5466 15 14 1.5632 -8.5941 7.5774 16 1 1.6442 -7.6463 8.7177 17 1 0.6917 -9.7385 7.9465 18 1 2.9233 -9.0923 7.2503 19 6 2.0266 -2.8532 -0.0465 20 6 1.5173 -2.0704 -1.2590 21 7 2.0193 -0.6918 -1.1993 22 6 1.6654 0.0506 -2.4165 23 6 2.3855 -0.5482 -3.5972 24 6 1.7949 -1.5652 -4.3238 25 6 2.4553 -2.1141 -5.4072 26 6 3.7066 -1.6469 -5.7631 27 6 4.2967 -0.6293 -5.0370 28 6 3.6362 -0.0801 -3.9540 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 3.1296 -0.7093 1.2578 33 1 1.6640 -0.2158 2.1400 34 1 2.2010 -2.2563 3.1848 35 1 0.2184 -3.6509 3.0077 36 1 1.1581 -4.7112 1.9302 37 1 2.8033 -5.0979 3.7440 38 1 1.8643 -4.0377 4.8222 39 1 -0.0906 -5.5471 4.6050 40 1 0.8480 -6.6077 3.5268 41 1 -0.7197 -8.9297 5.9172 42 1 3.1162 -2.8752 -0.0592 43 1 1.6415 -3.8723 -0.0826 44 1 0.4273 -2.0606 -1.2532 45 1 1.8712 -2.5466 -2.1733 46 1 1.9581 1.0944 -2.3036 47 1 0.5892 -0.0095 -2.5787 48 1 0.8196 -1.9340 -4.0424 49 1 1.9941 -2.9089 -5.9745 50 1 4.2223 -2.0755 -6.6098 51 1 5.2737 -0.2632 -5.3162 52 1 4.0973 0.7150 -3.3868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268957196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:07 Heat of formation + Delta-G solvation = 9.957112 kcal Electronic energy + Delta-G solvation = -26124.860613 eV Core-core repulsion = 22701.924422 eV Total energy + Delta-G solvation = -3422.936191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35189 -39.06239 -36.42296 -34.09447 -32.95526 -31.93167 -31.28409 -31.03883 -29.66402 -27.69240 -26.20689 -25.31276 -23.43413 -22.75318 -22.58573 -21.53589 -21.11438 -20.10748 -18.65347 -17.04433 -16.53946 -16.25793 -15.78312 -15.68517 -15.27363 -14.88330 -14.76728 -14.42283 -14.19429 -13.86913 -13.68947 -13.62065 -13.45357 -13.15743 -12.92562 -12.66704 -12.38979 -12.22906 -12.02158 -11.76917 -11.71329 -11.53190 -11.36249 -11.20244 -11.12475 -10.98829 -10.82275 -10.60433 -10.53809 -10.34715 -10.19266 -9.64225 -9.28289 -9.13847 -9.03277 -9.02241 -8.43144 -8.31087 -8.09397 -5.96465 -3.98410 1.08330 1.17145 3.35980 3.39806 3.40838 3.42827 3.90120 4.31609 4.44437 4.50165 4.57362 4.64642 4.76633 4.77587 4.86626 4.91393 5.02244 5.09548 5.14446 5.24681 5.25465 5.33878 5.38863 5.39141 5.43259 5.47572 5.61007 5.66794 5.72224 5.75602 5.79920 5.85720 5.86719 5.94737 5.99281 6.07377 6.17086 6.21375 6.27510 6.35398 6.37785 6.46555 6.74681 6.76929 6.84130 6.90046 6.94519 7.18268 7.43535 7.70291 7.72636 7.87739 8.04198 8.47664 9.08634 9.65262 11.14990 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.002069 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.341429 B =13531.966286 C =14213.700995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.086 3.914 3 H 0.082 0.918 4 C -0.112 4.112 5 C 0.086 3.914 6 H 0.040 0.960 7 N -0.687 5.687 8 C 0.061 3.939 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.103 4.103 20 C 0.049 3.951 21 N -0.523 5.523 22 C 0.092 3.908 23 C -0.075 4.075 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.099 4.099 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.337 0.663 35 H 0.021 0.979 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.013 0.987 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.043 0.957 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 20.375 -22.155 30.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.023 4.023 3 H 0.100 0.900 4 C -0.150 4.150 5 C -0.024 4.024 6 H 0.057 0.943 7 N -0.317 5.317 8 C -0.068 4.068 9 C -0.145 4.145 10 C -0.015 4.015 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.141 4.141 20 C -0.079 4.079 21 N -0.247 5.247 22 C -0.036 4.036 23 C -0.075 4.075 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.117 4.117 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.061 0.939 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.803 19.826 -22.455 30.338 hybrid contribution -1.400 -0.163 1.161 1.826 sum 3.404 19.663 -21.294 29.183 Atomic orbital electron populations 1.22557 0.97709 1.02728 1.02078 1.21646 0.92611 0.97838 0.90165 0.89961 1.21769 1.02382 0.94712 0.96133 1.21568 0.96495 0.92365 0.91985 0.94252 1.60560 1.51096 1.12092 1.07991 1.22149 0.93287 0.92157 0.99200 1.21618 1.00378 0.98271 0.94203 1.19060 0.94406 0.91788 0.96271 1.21229 1.08928 1.12211 1.13299 0.92721 1.25038 0.95002 0.97261 0.97291 1.69961 1.17349 1.25233 1.41128 0.86649 0.79018 0.79122 0.83154 1.20286 1.21340 1.20206 1.21553 1.02402 0.98106 0.92036 1.22241 0.97283 0.88704 0.99678 1.62168 1.59470 1.02207 1.00808 1.21038 0.97061 0.97572 0.87891 1.19739 0.95189 0.96670 0.95933 1.21077 1.00074 0.96452 0.95677 1.21126 0.95396 1.00022 0.97369 1.21150 0.95633 0.97285 0.99985 1.21156 0.99878 0.97031 0.95925 1.21009 0.94155 1.00029 0.96535 0.91677 0.91940 0.92752 0.90160 0.91708 0.84527 0.96027 0.91627 0.92559 0.93734 0.96905 0.96632 0.93016 0.90472 0.91593 0.94724 0.90315 0.90053 0.93854 0.86402 0.86181 0.86287 0.86185 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 8.18 37.16 0.30 -1.34 16 2 C 0.09 0.78 2.92 -67.73 -0.20 0.58 16 3 H 0.08 0.66 8.02 -51.93 -0.42 0.25 16 4 C -0.11 -1.16 4.88 -26.65 -0.13 -1.29 16 5 C 0.09 1.07 2.25 -67.59 -0.15 0.92 16 6 H 0.04 0.52 6.22 -51.93 -0.32 0.20 16 7 N -0.69 -10.22 6.31 -106.60 -0.67 -10.90 16 8 C 0.06 1.08 5.49 -3.83 -0.02 1.06 16 9 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 12 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 15 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.10 -1.28 5.59 -26.65 -0.15 -1.43 16 20 C 0.05 0.51 4.86 -3.84 -0.02 0.49 16 21 N -0.52 -5.01 4.59 -228.13 -1.05 -6.05 16 22 C 0.09 0.75 4.58 -4.97 -0.02 0.73 16 23 C -0.07 -0.66 4.89 -104.63 -0.51 -1.17 16 24 C -0.11 -0.99 7.88 -39.58 -0.31 -1.30 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 27 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 28 C -0.10 -0.84 9.70 -39.59 -0.38 -1.23 16 29 H 0.06 0.64 4.80 -51.93 -0.25 0.39 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.42 6.77 -51.93 -0.35 0.07 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.34 4.70 8.36 -39.29 -0.33 4.37 16 35 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 36 H 0.07 1.20 7.51 -51.93 -0.39 0.81 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 0.88 7.54 -51.93 -0.39 0.49 16 44 H 0.03 0.36 6.19 -51.93 -0.32 0.04 16 45 H 0.08 0.84 5.74 -51.93 -0.30 0.54 16 46 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 47 H 0.04 0.34 6.90 -51.93 -0.36 -0.01 16 48 H 0.12 0.92 7.94 -52.49 -0.42 0.50 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 50 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 51 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 52 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 396.76 15.07 5.98 5.98 Total: -1.00 -30.80 396.76 -12.80 -43.60 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -9.29 Total: 0.96 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -3.48 Total: -23.91 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.98 Total: -43.66 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.80 -12.80 -43.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268957196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.560 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds