Wall clock time and date at job start Tue Mar 31 2020 11:27:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09004 * 109.46088 * 2 1
4 4 C 1.53031 * 109.45267 * 119.97008 * 2 1 3
5 5 C 1.53117 * 109.27961 * 60.83506 * 4 2 1
6 6 H 1.09007 * 109.52265 * 297.68877 * 5 4 2
7 7 N 1.46898 * 109.52585 * 177.56078 * 5 4 2
8 8 C 1.46900 * 111.00161 * 154.99958 * 7 5 4
9 9 C 1.52995 * 109.47123 * 179.97438 * 8 7 5
10 10 C 1.53005 * 109.47224 * 179.97438 * 9 8 7
11 11 C 1.50700 * 109.47316 * 180.02562 * 10 9 8
12 12 H 1.08003 * 119.99726 * 0.02562 * 11 10 9
13 13 C 1.37877 * 120.00166 * 179.97438 * 11 10 9
14 14 N 1.31519 * 119.99746 * 0.02562 * 13 11 10
15 15 Si 1.86793 * 119.99996 * 180.02562 * 13 11 10
16 16 H 1.48501 * 109.47550 * 59.99928 * 15 13 11
17 17 H 1.48501 * 109.47057 * 179.97438 * 15 13 11
18 18 H 1.48500 * 109.47181 * 299.99879 * 15 13 11
19 19 C 1.53119 * 109.16187 * 57.65104 * 5 4 2
20 20 C 1.53038 * 109.27745 * 302.35167 * 19 5 4
21 21 N 1.46840 * 109.52548 * 59.17587 * 20 19 5
22 22 C 1.46904 * 111.00212 * 174.16164 * 21 20 19
23 23 C 1.50701 * 109.46874 * 294.21108 * 22 21 20
24 24 C 1.38235 * 119.99808 * 89.99842 * 23 22 21
25 25 C 1.38243 * 119.99602 * 179.97438 * 24 23 22
26 26 C 1.38231 * 120.00070 * 0.07188 * 25 24 23
27 27 C 1.38234 * 119.99869 * 359.88510 * 26 25 24
28 28 C 1.38230 * 119.99865 * 269.97587 * 23 22 21
29 29 H 1.08998 * 109.47173 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.47159 * 299.98131 * 1 2 3
31 31 H 1.09002 * 109.46794 * 59.97925 * 1 2 3
32 32 H 1.09000 * 109.50429 * 180.77623 * 4 2 1
33 33 H 1.09007 * 109.50757 * 300.85442 * 4 2 1
34 34 H 1.00901 * 110.99866 * 31.04492 * 7 5 4
35 35 H 1.09001 * 109.47358 * 300.00083 * 8 7 5
36 36 H 1.09003 * 109.47186 * 60.00035 * 8 7 5
37 37 H 1.08993 * 109.47534 * 299.99865 * 9 8 7
38 38 H 1.09004 * 109.47247 * 60.00138 * 9 8 7
39 39 H 1.09001 * 109.46983 * 300.00172 * 10 9 8
40 40 H 1.09004 * 109.46844 * 59.99955 * 10 9 8
41 41 H 0.96996 * 119.99612 * 179.97438 * 14 13 11
42 42 H 1.08998 * 109.50433 * 62.28709 * 19 5 4
43 43 H 1.08999 * 109.50473 * 182.37137 * 19 5 4
44 44 H 1.09007 * 109.46172 * 299.15956 * 20 19 5
45 45 H 1.08997 * 109.46139 * 179.19533 * 20 19 5
46 46 H 1.08993 * 109.47642 * 174.20672 * 22 21 20
47 47 H 1.09001 * 109.46800 * 54.20443 * 22 21 20
48 48 H 1.08000 * 120.00616 * 359.70324 * 24 23 22
49 49 H 1.08001 * 119.99556 * 179.97438 * 25 24 23
50 50 H 1.08005 * 119.99882 * 180.02562 * 26 25 24
51 51 H 1.08007 * 119.99474 * 180.10845 * 27 26 25
52 52 H 1.08001 * 120.00350 * 359.97438 * 28 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0397 -0.7208 1.2500
5 6 1.5439 -2.1694 1.2357
6 1 0.4544 -2.1819 1.2683
7 7 2.0781 -2.8828 2.4035
8 6 1.2170 -4.0159 2.7676
9 6 1.8050 -4.7328 3.9846
10 6 0.9077 -5.9126 4.3642
11 6 1.4865 -6.6183 5.5634
12 1 2.4024 -6.2609 6.0103
13 6 0.8462 -7.7197 6.0906
14 7 -0.2695 -8.1547 5.5466
15 14 1.5632 -8.5941 7.5774
16 1 1.6442 -7.6463 8.7177
17 1 0.6917 -9.7385 7.9465
18 1 2.9233 -9.0923 7.2503
19 6 2.0266 -2.8532 -0.0465
20 6 1.5173 -2.0704 -1.2590
21 7 2.0193 -0.6918 -1.1993
22 6 1.6654 0.0506 -2.4165
23 6 2.3855 -0.5482 -3.5972
24 6 1.7949 -1.5652 -4.3238
25 6 2.4553 -2.1141 -5.4072
26 6 3.7066 -1.6469 -5.7631
27 6 4.2967 -0.6293 -5.0370
28 6 3.6362 -0.0801 -3.9540
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3633 0.5135 0.8902
31 1 -0.3633 0.5142 -0.8898
32 1 3.1296 -0.7093 1.2578
33 1 1.6640 -0.2158 2.1400
34 1 2.2010 -2.2563 3.1848
35 1 0.2184 -3.6509 3.0077
36 1 1.1581 -4.7112 1.9302
37 1 2.8033 -5.0979 3.7440
38 1 1.8643 -4.0377 4.8222
39 1 -0.0906 -5.5471 4.6050
40 1 0.8480 -6.6077 3.5268
41 1 -0.7197 -8.9297 5.9172
42 1 3.1162 -2.8752 -0.0592
43 1 1.6415 -3.8723 -0.0826
44 1 0.4273 -2.0606 -1.2532
45 1 1.8712 -2.5466 -2.1733
46 1 1.9581 1.0944 -2.3036
47 1 0.5892 -0.0095 -2.5787
48 1 0.8196 -1.9340 -4.0424
49 1 1.9941 -2.9089 -5.9745
50 1 4.2223 -2.0755 -6.6098
51 1 5.2737 -0.2632 -5.3162
52 1 4.0973 0.7150 -3.3868
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000268957196.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:27:07
Heat of formation + Delta-G solvation = 9.957112 kcal
Electronic energy + Delta-G solvation = -26124.860613 eV
Core-core repulsion = 22701.924422 eV
Total energy + Delta-G solvation = -3422.936191 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.35189 -39.06239 -36.42296 -34.09447 -32.95526 -31.93167 -31.28409 -31.03883
-29.66402 -27.69240 -26.20689 -25.31276 -23.43413 -22.75318 -22.58573 -21.53589
-21.11438 -20.10748 -18.65347 -17.04433 -16.53946 -16.25793 -15.78312 -15.68517
-15.27363 -14.88330 -14.76728 -14.42283 -14.19429 -13.86913 -13.68947 -13.62065
-13.45357 -13.15743 -12.92562 -12.66704 -12.38979 -12.22906 -12.02158 -11.76917
-11.71329 -11.53190 -11.36249 -11.20244 -11.12475 -10.98829 -10.82275 -10.60433
-10.53809 -10.34715 -10.19266 -9.64225 -9.28289 -9.13847 -9.03277 -9.02241
-8.43144 -8.31087 -8.09397 -5.96465 -3.98410 1.08330 1.17145 3.35980
3.39806 3.40838 3.42827 3.90120 4.31609 4.44437 4.50165 4.57362
4.64642 4.76633 4.77587 4.86626 4.91393 5.02244 5.09548 5.14446
5.24681 5.25465 5.33878 5.38863 5.39141 5.43259 5.47572 5.61007
5.66794 5.72224 5.75602 5.79920 5.85720 5.86719 5.94737 5.99281
6.07377 6.17086 6.21375 6.27510 6.35398 6.37785 6.46555 6.74681
6.76929 6.84130 6.90046 6.94519 7.18268 7.43535 7.70291 7.72636
7.87739 8.04198 8.47664 9.08634 9.65262 11.14990
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.020383 B = 0.002069 C = 0.001969
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1373.341429 B =13531.966286 C =14213.700995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.086 3.914
3 H 0.082 0.918
4 C -0.112 4.112
5 C 0.086 3.914
6 H 0.040 0.960
7 N -0.687 5.687
8 C 0.061 3.939
9 C -0.107 4.107
10 C 0.022 3.978
11 C -0.518 4.518
12 H 0.055 0.945
13 C 0.055 3.945
14 N -0.897 5.897
15 Si 0.893 3.107
16 H -0.277 1.277
17 H -0.288 1.288
18 H -0.276 1.276
19 C -0.103 4.103
20 C 0.049 3.951
21 N -0.523 5.523
22 C 0.092 3.908
23 C -0.075 4.075
24 C -0.114 4.114
25 C -0.121 4.121
26 C -0.122 4.122
27 C -0.122 4.122
28 C -0.099 4.099
29 H 0.064 0.936
30 H 0.062 0.938
31 H 0.053 0.947
32 H 0.080 0.920
33 H 0.064 0.936
34 H 0.337 0.663
35 H 0.021 0.979
36 H 0.065 0.935
37 H 0.056 0.944
38 H 0.044 0.956
39 H 0.013 0.987
40 H 0.015 0.985
41 H 0.260 0.740
42 H 0.077 0.923
43 H 0.065 0.935
44 H 0.035 0.965
45 H 0.079 0.921
46 H 0.081 0.919
47 H 0.043 0.957
48 H 0.118 0.882
49 H 0.120 0.880
50 H 0.119 0.881
51 H 0.120 0.880
52 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.005 20.375 -22.155 30.365
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.251 4.251
2 C -0.023 4.023
3 H 0.100 0.900
4 C -0.150 4.150
5 C -0.024 4.024
6 H 0.057 0.943
7 N -0.317 5.317
8 C -0.068 4.068
9 C -0.145 4.145
10 C -0.015 4.015
11 C -0.557 4.557
12 H 0.073 0.927
13 C -0.146 4.146
14 N -0.537 5.537
15 Si 0.721 3.279
16 H -0.203 1.203
17 H -0.213 1.213
18 H -0.202 1.202
19 C -0.141 4.141
20 C -0.079 4.079
21 N -0.247 5.247
22 C -0.036 4.036
23 C -0.075 4.075
24 C -0.133 4.133
25 C -0.139 4.139
26 C -0.141 4.141
27 C -0.140 4.140
28 C -0.117 4.117
29 H 0.083 0.917
30 H 0.081 0.919
31 H 0.072 0.928
32 H 0.098 0.902
33 H 0.083 0.917
34 H 0.155 0.845
35 H 0.040 0.960
36 H 0.084 0.916
37 H 0.074 0.926
38 H 0.063 0.937
39 H 0.031 0.969
40 H 0.034 0.966
41 H 0.070 0.930
42 H 0.095 0.905
43 H 0.084 0.916
44 H 0.053 0.947
45 H 0.097 0.903
46 H 0.099 0.901
47 H 0.061 0.939
48 H 0.136 0.864
49 H 0.138 0.862
50 H 0.137 0.863
51 H 0.138 0.862
52 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 4.803 19.826 -22.455 30.338
hybrid contribution -1.400 -0.163 1.161 1.826
sum 3.404 19.663 -21.294 29.183
Atomic orbital electron populations
1.22557 0.97709 1.02728 1.02078 1.21646 0.92611 0.97838 0.90165
0.89961 1.21769 1.02382 0.94712 0.96133 1.21568 0.96495 0.92365
0.91985 0.94252 1.60560 1.51096 1.12092 1.07991 1.22149 0.93287
0.92157 0.99200 1.21618 1.00378 0.98271 0.94203 1.19060 0.94406
0.91788 0.96271 1.21229 1.08928 1.12211 1.13299 0.92721 1.25038
0.95002 0.97261 0.97291 1.69961 1.17349 1.25233 1.41128 0.86649
0.79018 0.79122 0.83154 1.20286 1.21340 1.20206 1.21553 1.02402
0.98106 0.92036 1.22241 0.97283 0.88704 0.99678 1.62168 1.59470
1.02207 1.00808 1.21038 0.97061 0.97572 0.87891 1.19739 0.95189
0.96670 0.95933 1.21077 1.00074 0.96452 0.95677 1.21126 0.95396
1.00022 0.97369 1.21150 0.95633 0.97285 0.99985 1.21156 0.99878
0.97031 0.95925 1.21009 0.94155 1.00029 0.96535 0.91677 0.91940
0.92752 0.90160 0.91708 0.84527 0.96027 0.91627 0.92559 0.93734
0.96905 0.96632 0.93016 0.90472 0.91593 0.94724 0.90315 0.90053
0.93854 0.86402 0.86181 0.86287 0.86185 0.86054
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.65 8.18 37.16 0.30 -1.34 16
2 C 0.09 0.78 2.92 -67.73 -0.20 0.58 16
3 H 0.08 0.66 8.02 -51.93 -0.42 0.25 16
4 C -0.11 -1.16 4.88 -26.65 -0.13 -1.29 16
5 C 0.09 1.07 2.25 -67.59 -0.15 0.92 16
6 H 0.04 0.52 6.22 -51.93 -0.32 0.20 16
7 N -0.69 -10.22 6.31 -106.60 -0.67 -10.90 16
8 C 0.06 1.08 5.49 -3.83 -0.02 1.06 16
9 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16
10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16
11 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16
12 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16
13 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16
14 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16
15 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16
16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
19 C -0.10 -1.28 5.59 -26.65 -0.15 -1.43 16
20 C 0.05 0.51 4.86 -3.84 -0.02 0.49 16
21 N -0.52 -5.01 4.59 -228.13 -1.05 -6.05 16
22 C 0.09 0.75 4.58 -4.97 -0.02 0.73 16
23 C -0.07 -0.66 4.89 -104.63 -0.51 -1.17 16
24 C -0.11 -0.99 7.88 -39.58 -0.31 -1.30 16
25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16
26 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16
27 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16
28 C -0.10 -0.84 9.70 -39.59 -0.38 -1.23 16
29 H 0.06 0.64 4.80 -51.93 -0.25 0.39 16
30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.05 0.42 6.77 -51.93 -0.35 0.07 16
32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
33 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16
34 H 0.34 4.70 8.36 -39.29 -0.33 4.37 16
35 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16
36 H 0.07 1.20 7.51 -51.93 -0.39 0.81 16
37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16
39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
43 H 0.07 0.88 7.54 -51.93 -0.39 0.49 16
44 H 0.03 0.36 6.19 -51.93 -0.32 0.04 16
45 H 0.08 0.84 5.74 -51.93 -0.30 0.54 16
46 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16
47 H 0.04 0.34 6.90 -51.93 -0.36 -0.01 16
48 H 0.12 0.92 7.94 -52.49 -0.42 0.50 16
49 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16
50 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16
51 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16
52 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16
LS Contribution 396.76 15.07 5.98 5.98
Total: -1.00 -30.80 396.76 -12.80 -43.60
By element:
Atomic # 1 Polarization: 10.25 SS G_CDS: -9.29 Total: 0.96 kcal
Atomic # 6 Polarization: -20.43 SS G_CDS: -3.48 Total: -23.91 kcal
Atomic # 7 Polarization: -42.68 SS G_CDS: -0.98 Total: -43.66 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -30.80 -12.80 -43.60 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000268957196.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.560 kcal
(2) G-P(sol) polarization free energy of solvation -30.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.799 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.957 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds