Wall clock time and date at job start Tue Mar 31 2020 11:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46088 * 2 1 4 4 C 1.53031 * 109.45267 * 119.97008 * 2 1 3 5 5 C 1.53117 * 109.27961 * 60.83506 * 4 2 1 6 6 H 1.09007 * 109.52265 * 297.68877 * 5 4 2 7 7 N 1.46898 * 109.52585 * 177.56078 * 5 4 2 8 8 C 1.46900 * 111.00161 * 154.99958 * 7 5 4 9 9 C 1.52995 * 109.47123 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.47224 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47316 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99726 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00166 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99746 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99996 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47550 * 59.99928 * 15 13 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47181 * 299.99879 * 15 13 11 19 19 C 1.53119 * 109.16187 * 57.65104 * 5 4 2 20 20 C 1.53038 * 109.27745 * 302.35167 * 19 5 4 21 21 N 1.46840 * 109.52548 * 59.17587 * 20 19 5 22 22 C 1.46904 * 111.00212 * 174.16164 * 21 20 19 23 23 C 1.50701 * 109.46874 * 294.21108 * 22 21 20 24 24 C 1.38235 * 119.99808 * 89.99842 * 23 22 21 25 25 C 1.38243 * 119.99602 * 179.97438 * 24 23 22 26 26 C 1.38231 * 120.00070 * 0.07188 * 25 24 23 27 27 C 1.38234 * 119.99869 * 359.88510 * 26 25 24 28 28 C 1.38230 * 119.99865 * 269.97587 * 23 22 21 29 29 H 1.08998 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47159 * 299.98131 * 1 2 3 31 31 H 1.09002 * 109.46794 * 59.97925 * 1 2 3 32 32 H 1.09000 * 109.50429 * 180.77623 * 4 2 1 33 33 H 1.09007 * 109.50757 * 300.85442 * 4 2 1 34 34 H 1.00901 * 110.99866 * 31.04492 * 7 5 4 35 35 H 1.09001 * 109.47358 * 300.00083 * 8 7 5 36 36 H 1.09003 * 109.47186 * 60.00035 * 8 7 5 37 37 H 1.08993 * 109.47534 * 299.99865 * 9 8 7 38 38 H 1.09004 * 109.47247 * 60.00138 * 9 8 7 39 39 H 1.09001 * 109.46983 * 300.00172 * 10 9 8 40 40 H 1.09004 * 109.46844 * 59.99955 * 10 9 8 41 41 H 0.96996 * 119.99612 * 179.97438 * 14 13 11 42 42 H 1.08998 * 109.50433 * 62.28709 * 19 5 4 43 43 H 1.08999 * 109.50473 * 182.37137 * 19 5 4 44 44 H 1.09007 * 109.46172 * 299.15956 * 20 19 5 45 45 H 1.08997 * 109.46139 * 179.19533 * 20 19 5 46 46 H 1.08993 * 109.47642 * 174.20672 * 22 21 20 47 47 H 1.09001 * 109.46800 * 54.20443 * 22 21 20 48 48 H 1.08000 * 120.00616 * 359.70324 * 24 23 22 49 49 H 1.08001 * 119.99556 * 179.97438 * 25 24 23 50 50 H 1.08005 * 119.99882 * 180.02562 * 26 25 24 51 51 H 1.08007 * 119.99474 * 180.10845 * 27 26 25 52 52 H 1.08001 * 120.00350 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7208 1.2500 5 6 1.5439 -2.1694 1.2357 6 1 0.4544 -2.1819 1.2683 7 7 2.0781 -2.8828 2.4035 8 6 1.2170 -4.0159 2.7676 9 6 1.8050 -4.7328 3.9846 10 6 0.9077 -5.9126 4.3642 11 6 1.4865 -6.6183 5.5634 12 1 2.4024 -6.2609 6.0103 13 6 0.8462 -7.7197 6.0906 14 7 -0.2695 -8.1547 5.5466 15 14 1.5632 -8.5941 7.5774 16 1 1.6442 -7.6463 8.7177 17 1 0.6917 -9.7385 7.9465 18 1 2.9233 -9.0923 7.2503 19 6 2.0266 -2.8532 -0.0465 20 6 1.5173 -2.0704 -1.2590 21 7 2.0193 -0.6918 -1.1993 22 6 1.6654 0.0506 -2.4165 23 6 2.3855 -0.5482 -3.5972 24 6 1.7949 -1.5652 -4.3238 25 6 2.4553 -2.1141 -5.4072 26 6 3.7066 -1.6469 -5.7631 27 6 4.2967 -0.6293 -5.0370 28 6 3.6362 -0.0801 -3.9540 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 3.1296 -0.7093 1.2578 33 1 1.6640 -0.2158 2.1400 34 1 2.2010 -2.2563 3.1848 35 1 0.2184 -3.6509 3.0077 36 1 1.1581 -4.7112 1.9302 37 1 2.8033 -5.0979 3.7440 38 1 1.8643 -4.0377 4.8222 39 1 -0.0906 -5.5471 4.6050 40 1 0.8480 -6.6077 3.5268 41 1 -0.7197 -8.9297 5.9172 42 1 3.1162 -2.8752 -0.0592 43 1 1.6415 -3.8723 -0.0826 44 1 0.4273 -2.0606 -1.2532 45 1 1.8712 -2.5466 -2.1733 46 1 1.9581 1.0944 -2.3036 47 1 0.5892 -0.0095 -2.5787 48 1 0.8196 -1.9340 -4.0424 49 1 1.9941 -2.9089 -5.9745 50 1 4.2223 -2.0755 -6.6098 51 1 5.2737 -0.2632 -5.3162 52 1 4.0973 0.7150 -3.3868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268957196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:05 Heat of formation + Delta-G solvation = -7.347155 kcal Electronic energy + Delta-G solvation = -26125.610982 eV Core-core repulsion = 22701.924422 eV Total energy + Delta-G solvation = -3423.686560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11988 -39.76171 -37.65934 -35.74161 -34.28918 -33.13990 -32.34641 -31.69390 -30.85367 -28.69365 -27.59879 -26.36521 -24.44147 -24.20436 -23.24831 -22.58394 -21.98775 -21.73173 -19.53671 -18.47601 -17.64378 -17.40512 -16.73486 -16.58864 -16.44503 -16.11302 -15.93392 -15.46690 -15.37773 -14.92380 -14.70422 -14.44584 -14.24441 -14.21211 -13.99830 -13.71804 -13.60120 -13.38938 -13.27695 -13.07854 -12.77059 -12.69876 -12.48921 -12.46450 -12.36192 -12.15557 -11.96210 -11.83815 -11.78057 -11.60491 -11.40884 -11.34276 -11.19855 -10.91742 -10.55641 -9.75324 -9.65867 -9.34569 -9.15871 -8.20628 -6.31916 0.46843 0.55951 1.39473 1.43082 1.50986 2.40696 2.75117 3.12125 3.16822 3.21696 3.72445 3.84889 3.93260 3.98770 4.13392 4.19830 4.20693 4.24614 4.30577 4.32110 4.36290 4.43509 4.47916 4.52291 4.59478 4.65996 4.68911 4.73662 4.77168 4.81820 4.85451 4.93924 4.98764 5.03458 5.08368 5.16238 5.17313 5.20478 5.21625 5.23631 5.27058 5.46742 5.51808 5.61298 5.67826 5.73875 5.74944 5.84788 6.10823 6.13889 6.15627 6.22586 6.27236 6.53530 6.84690 7.37184 8.91165 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.002069 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.341429 B =13531.966286 C =14213.700995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.089 3.911 3 H 0.100 0.900 4 C -0.105 4.105 5 C 0.088 3.912 6 H 0.036 0.964 7 N -0.688 5.688 8 C 0.076 3.924 9 C -0.092 4.092 10 C 0.026 3.974 11 C -0.544 4.544 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.267 1.267 19 C -0.099 4.099 20 C 0.059 3.941 21 N -0.529 5.529 22 C 0.095 3.905 23 C -0.086 4.086 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.131 4.131 27 C -0.130 4.130 28 C -0.110 4.110 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.345 0.655 35 H 0.020 0.980 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.051 0.949 39 H -0.010 1.010 40 H -0.011 1.011 41 H 0.264 0.736 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.047 0.953 48 H 0.121 0.879 49 H 0.133 0.867 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 21.783 -22.093 31.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.020 4.020 3 H 0.118 0.882 4 C -0.143 4.143 5 C -0.022 4.022 6 H 0.054 0.946 7 N -0.319 5.319 8 C -0.053 4.053 9 C -0.130 4.130 10 C -0.012 4.012 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.138 4.138 20 C -0.070 4.070 21 N -0.253 5.253 22 C -0.032 4.032 23 C -0.087 4.087 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.148 4.148 28 C -0.129 4.129 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.164 0.836 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.065 0.935 48 H 0.139 0.861 49 H 0.151 0.849 50 H 0.154 0.846 51 H 0.155 0.845 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.743 21.259 -22.402 31.414 hybrid contribution -1.688 -0.599 1.079 2.092 sum 4.055 20.660 -21.323 29.966 Atomic orbital electron populations 1.22506 0.97277 1.01928 1.02903 1.21672 0.92875 0.98311 0.89145 0.88182 1.21721 1.01908 0.93131 0.97582 1.21607 0.96232 0.93631 0.90709 0.94629 1.60481 1.50435 1.11978 1.09013 1.21821 0.93363 0.92913 0.97246 1.21369 0.98937 0.96699 0.95947 1.18965 0.94293 0.93069 0.94863 1.21672 1.09349 1.12938 1.14220 0.92196 1.26027 0.95301 0.98093 1.00644 1.70097 1.18723 1.25804 1.42814 0.85470 0.78420 0.77911 0.79069 1.19051 1.20754 1.19181 1.21491 1.01361 0.97755 0.93196 1.22073 0.97217 0.89309 0.98368 1.62141 1.59676 1.01783 1.01683 1.21053 0.97221 0.97918 0.86967 1.19877 0.95549 0.96958 0.96285 1.21231 1.00450 0.96749 0.96081 1.21382 0.95745 1.00421 0.97475 1.21441 0.95670 0.97280 1.00518 1.21440 1.00642 0.96973 0.95744 1.21222 0.94240 1.00456 0.96949 0.93231 0.91349 0.91729 0.90826 0.90507 0.83637 0.96193 0.92576 0.93021 0.92980 0.99152 0.99248 0.92756 0.91869 0.93216 0.94550 0.90584 0.88724 0.93512 0.86090 0.84940 0.84590 0.84506 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 8.18 71.98 0.59 -2.27 16 2 C 0.09 1.41 2.92 44.94 0.13 1.54 16 3 H 0.10 1.31 8.02 -2.39 -0.02 1.29 16 4 C -0.11 -2.01 4.88 30.64 0.15 -1.86 16 5 C 0.09 2.14 2.25 44.99 0.10 2.24 16 6 H 0.04 0.92 6.22 -2.38 -0.01 0.91 16 7 N -0.69 -20.13 6.31 -491.16 -3.10 -23.23 16 8 C 0.08 2.72 5.49 86.30 0.47 3.20 16 9 C -0.09 -3.93 5.41 30.59 0.17 -3.77 16 10 C 0.03 1.41 4.97 29.85 0.15 1.55 16 11 C -0.54 -31.90 9.11 25.60 0.23 -31.67 16 12 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 13 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 14 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 15 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 C -0.10 -2.50 5.59 30.65 0.17 -2.33 16 20 C 0.06 1.20 4.86 86.33 0.42 1.62 16 21 N -0.53 -9.38 4.59 -875.67 -4.02 -13.40 16 22 C 0.10 1.41 4.58 85.56 0.39 1.80 16 23 C -0.09 -1.43 4.89 -19.87 -0.10 -1.53 16 24 C -0.13 -2.11 7.88 22.27 0.18 -1.94 16 25 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 26 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 27 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 28 C -0.11 -1.75 9.70 22.27 0.22 -1.53 16 29 H 0.05 0.92 4.80 -2.39 -0.01 0.91 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.86 6.77 -2.39 -0.02 0.84 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.28 16 34 H 0.34 9.20 8.36 -89.69 -0.75 8.45 16 35 H 0.02 0.72 8.06 -2.39 -0.02 0.70 16 36 H 0.06 2.12 7.51 -2.39 -0.02 2.10 16 37 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 41 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.05 1.38 7.54 -2.39 -0.02 1.36 16 44 H 0.04 0.74 6.19 -2.38 -0.01 0.72 16 45 H 0.08 1.61 5.74 -2.39 -0.01 1.60 16 46 H 0.09 1.15 7.93 -2.39 -0.02 1.13 16 47 H 0.05 0.66 6.90 -2.39 -0.02 0.65 16 48 H 0.12 1.84 7.94 -2.91 -0.02 1.82 16 49 H 0.13 1.62 8.06 -2.91 -0.02 1.59 16 50 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 51 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 52 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -66.27 396.76 -0.29 -66.55 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.12 Total: 20.61 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 4.40 Total: -39.89 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -6.84 Total: -94.41 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.27 -0.29 -66.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268957196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.207 kcal (2) G-P(sol) polarization free energy of solvation -66.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds