Wall clock time and date at job start Tue Mar 31 2020 11:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.46946 * 2 1 4 4 C 1.53048 * 109.45547 * 240.09062 * 2 1 3 5 5 C 1.53115 * 109.27946 * 180.87651 * 4 2 1 6 6 H 1.09010 * 109.52195 * 297.62839 * 5 4 2 7 7 N 1.46892 * 109.52450 * 177.50007 * 5 4 2 8 8 C 1.46899 * 111.00285 * 155.12647 * 7 5 4 9 9 C 1.52995 * 109.47643 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47871 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47596 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99596 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99848 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00146 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99920 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46878 * 89.99942 * 15 13 11 17 17 H 1.48502 * 109.47101 * 209.99928 * 15 13 11 18 18 H 1.48500 * 109.47056 * 329.99975 * 15 13 11 19 19 C 1.53121 * 109.21076 * 57.55869 * 5 4 2 20 20 C 1.53032 * 109.27967 * 302.37904 * 19 5 4 21 21 N 1.46840 * 109.52469 * 59.17808 * 20 19 5 22 22 C 1.46902 * 111.00195 * 174.15741 * 21 20 19 23 23 C 1.50701 * 109.47235 * 294.75267 * 22 21 20 24 24 C 1.38240 * 119.99583 * 275.72925 * 23 22 21 25 25 C 1.38236 * 119.99546 * 179.76440 * 24 23 22 26 26 C 1.38237 * 120.00134 * 0.50799 * 25 24 23 27 27 C 1.38236 * 120.00067 * 359.74598 * 26 25 24 28 28 C 1.38235 * 119.99928 * 0.02562 * 27 26 25 29 29 H 1.09007 * 109.46863 * 306.30694 * 1 2 3 30 30 H 1.09005 * 109.46935 * 66.29731 * 1 2 3 31 31 H 1.08995 * 109.47734 * 186.30392 * 1 2 3 32 32 H 1.09003 * 109.55198 * 60.90301 * 4 2 1 33 33 H 1.08996 * 109.45229 * 300.78737 * 4 2 1 34 34 H 1.00901 * 111.00156 * 279.07682 * 7 5 4 35 35 H 1.09007 * 109.47187 * 300.00147 * 8 7 5 36 36 H 1.09001 * 109.47557 * 59.99618 * 8 7 5 37 37 H 1.08999 * 109.47390 * 300.00659 * 9 8 7 38 38 H 1.09010 * 109.47144 * 59.99745 * 9 8 7 39 39 H 1.09007 * 109.47178 * 300.00568 * 10 9 8 40 40 H 1.09003 * 109.47061 * 59.99437 * 10 9 8 41 41 H 0.97009 * 119.99790 * 180.02562 * 14 13 11 42 42 H 1.08998 * 109.50124 * 62.32682 * 19 5 4 43 43 H 1.09002 * 109.49691 * 182.43724 * 19 5 4 44 44 H 1.09006 * 109.46174 * 179.20003 * 20 19 5 45 45 H 1.09000 * 109.46647 * 299.17166 * 20 19 5 46 46 H 1.08997 * 109.47158 * 54.74915 * 22 21 20 47 47 H 1.08998 * 109.47482 * 174.74996 * 22 21 20 48 48 H 1.08003 * 120.00156 * 359.97438 * 24 23 22 49 49 H 1.07999 * 120.00215 * 180.22574 * 25 24 23 50 50 H 1.07994 * 120.00095 * 179.72116 * 26 25 24 51 51 H 1.08001 * 120.00337 * 179.97438 * 27 26 25 52 52 H 1.07998 * 120.00299 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7196 -1.2509 5 6 3.5707 -0.7364 -1.2358 6 1 3.9466 0.2863 -1.2679 7 7 4.0650 -1.4779 -2.4036 8 6 5.4220 -1.0470 -2.7651 9 6 5.9019 -1.8402 -3.9822 10 6 7.3150 -1.3910 -4.3591 11 6 7.7873 -2.1719 -5.5583 12 1 7.1441 -2.9146 -6.0065 13 6 9.0410 -1.9388 -6.0826 14 7 9.8245 -1.0346 -5.5364 15 14 9.6268 -2.9073 -7.5687 16 1 9.2459 -2.1871 -8.8103 17 1 11.1037 -3.0526 -7.5140 18 1 8.9965 -4.2518 -7.5631 19 6 4.0544 -1.4193 0.0464 20 6 3.4864 -0.6782 1.2588 21 7 2.0193 -0.6919 1.1993 22 6 1.4375 -0.1108 2.4165 23 6 1.7732 -0.9822 3.5993 24 6 0.9891 -2.0824 3.8919 25 6 1.2999 -2.8846 4.9739 26 6 2.3887 -2.5805 5.7696 27 6 3.1697 -1.4773 5.4801 28 6 2.8617 -0.6778 4.3953 29 1 -0.3633 0.6085 0.8282 30 1 -0.3633 0.4131 -0.9410 31 1 -0.3634 -1.0214 0.1128 32 1 1.6902 -0.1960 -2.1408 33 1 1.6646 -1.7429 -1.2592 34 1 4.0332 -2.4731 -2.2400 35 1 5.4140 0.0165 -3.0041 36 1 6.0955 -1.2258 -1.9268 37 1 5.9099 -2.9035 -3.7428 38 1 5.2285 -1.6618 -4.8207 39 1 7.3065 -0.3276 -4.5987 40 1 7.9886 -1.5690 -3.5208 41 1 10.7064 -0.8704 -5.9055 42 1 3.7120 -2.4541 0.0590 43 1 5.1436 -1.3954 0.0827 44 1 3.8175 -1.1705 2.1733 45 1 3.8403 0.3527 1.2530 46 1 1.8456 0.8876 2.5734 47 1 0.3548 -0.0476 2.3075 48 1 0.1356 -2.3173 3.2730 49 1 0.6895 -3.7463 5.2004 50 1 2.6289 -3.2046 6.6176 51 1 4.0201 -1.2394 6.1020 52 1 3.4716 0.1844 4.1694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268957197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:10 Heat of formation + Delta-G solvation = 6.482588 kcal Electronic energy + Delta-G solvation = -25988.651177 eV Core-core repulsion = 22565.564319 eV Total energy + Delta-G solvation = -3423.086857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.18984 -38.96572 -36.49659 -34.07557 -33.06707 -32.35251 -31.26555 -31.10498 -29.61689 -27.37114 -26.33860 -25.27695 -23.23453 -22.68940 -22.39221 -21.47565 -20.85632 -20.26561 -19.59604 -17.06514 -16.32841 -16.17468 -15.93639 -15.59936 -15.18488 -14.92322 -14.77420 -14.43451 -14.27987 -14.06975 -13.83502 -13.65755 -13.13817 -12.92377 -12.82287 -12.54293 -12.37894 -12.22303 -12.09365 -11.95279 -11.67283 -11.55466 -11.35690 -11.24697 -11.12718 -10.91425 -10.83036 -10.62500 -10.56140 -10.53291 -10.31470 -9.65734 -9.28652 -9.17014 -9.03809 -9.01384 -8.50007 -8.31594 -8.05860 -5.96817 -3.98703 1.06056 1.14932 3.34329 3.38641 3.40139 3.44013 3.84882 4.29870 4.45665 4.49928 4.56811 4.69260 4.75166 4.77819 4.85314 4.88285 5.03694 5.04974 5.19153 5.22005 5.28390 5.34668 5.37462 5.38943 5.40787 5.49908 5.60639 5.67146 5.73291 5.75419 5.78027 5.80866 5.89338 5.93127 5.97530 6.02142 6.17777 6.21703 6.25278 6.29348 6.35867 6.37231 6.72540 6.76675 6.83150 6.87527 6.94178 7.17876 7.41889 7.69817 7.72434 7.87410 8.03911 8.47446 9.08589 9.65112 11.14641 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002057 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.953297 B =13605.651248 C =14443.833339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.096 4.096 5 C 0.086 3.914 6 H 0.070 0.930 7 N -0.686 5.686 8 C 0.060 3.940 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.145 4.145 20 C 0.059 3.941 21 N -0.526 5.526 22 C 0.087 3.913 23 C -0.075 4.075 24 C -0.097 4.097 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.116 4.116 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.338 0.662 35 H 0.064 0.936 36 H 0.023 0.977 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.031 0.969 46 H 0.039 0.961 47 H 0.089 0.911 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.562 1.580 22.994 30.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 H 0.057 0.943 4 C -0.135 4.135 5 C -0.025 4.025 6 H 0.089 0.911 7 N -0.315 5.315 8 C -0.069 4.069 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.185 4.185 20 C -0.069 4.069 21 N -0.251 5.251 22 C -0.040 4.040 23 C -0.076 4.076 24 C -0.115 4.115 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.134 4.134 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.049 0.951 46 H 0.058 0.942 47 H 0.107 0.893 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.836 1.604 22.444 30.667 hybrid contribution 1.408 -0.065 0.046 1.410 sum -19.428 1.539 22.490 29.759 Atomic orbital electron populations 1.21921 0.94337 1.02555 1.01682 1.21645 0.95270 0.95519 0.90238 0.94263 1.21591 0.94676 1.01500 0.95694 1.21612 0.94988 0.97783 0.88077 0.91145 1.60642 1.25249 1.09366 1.36211 1.22136 0.86769 1.00200 0.97754 1.21620 0.99564 0.97987 0.95328 1.19064 0.89655 0.96635 0.96204 1.21264 1.00124 1.20913 1.13294 0.92667 1.25038 0.96876 0.95426 0.97265 1.69972 1.09341 1.33337 1.41015 0.86593 0.77765 0.80471 0.83169 1.20666 1.21274 1.19880 1.22328 1.00297 1.00683 0.95145 1.22055 0.86910 0.98747 0.99194 1.61996 1.07333 1.54810 1.00950 1.21133 1.00727 0.94384 0.87725 1.19758 0.95492 0.96494 0.95826 1.21006 0.99632 0.94208 0.96692 1.21165 0.97629 0.99621 0.95600 1.21152 0.95662 0.97472 0.99800 1.21121 0.99733 0.95495 0.97598 1.21087 0.96966 0.99916 0.95444 0.92810 0.91863 0.91582 0.90841 0.91075 0.84397 0.91709 0.95857 0.93690 0.92606 0.96648 0.96862 0.93074 0.90992 0.91513 0.90507 0.95104 0.94240 0.89280 0.86005 0.86178 0.86294 0.86208 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.56 37.15 0.32 -0.80 16 2 C 0.08 0.76 2.44 -67.72 -0.17 0.60 16 3 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 4 C -0.10 -1.05 4.99 -26.65 -0.13 -1.18 16 5 C 0.09 1.07 2.53 -67.59 -0.17 0.90 16 6 H 0.07 0.94 7.80 -51.92 -0.41 0.54 16 7 N -0.69 -10.17 6.25 -106.60 -0.67 -10.83 16 8 C 0.06 1.06 5.49 -3.83 -0.02 1.04 16 9 C -0.11 -2.27 5.41 -26.74 -0.14 -2.41 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 15 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.15 -1.69 5.35 -26.65 -0.14 -1.83 16 20 C 0.06 0.62 5.21 -3.84 -0.02 0.60 16 21 N -0.53 -5.03 4.49 -228.13 -1.02 -6.05 16 22 C 0.09 0.73 4.81 -4.97 -0.02 0.70 16 23 C -0.08 -0.66 4.68 -104.62 -0.49 -1.15 16 24 C -0.10 -0.82 9.73 -39.58 -0.38 -1.21 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 26 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 27 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 28 C -0.12 -0.99 8.26 -39.58 -0.33 -1.31 16 29 H 0.05 0.36 6.51 -51.92 -0.34 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.34 4.82 8.45 -39.29 -0.33 4.49 16 35 H 0.06 1.18 8.06 -51.92 -0.42 0.76 16 36 H 0.02 0.41 7.50 -51.93 -0.39 0.02 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 39 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 42 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 44 H 0.08 0.81 6.09 -51.93 -0.32 0.50 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.04 0.32 8.03 -51.93 -0.42 -0.09 16 47 H 0.09 0.66 5.80 -51.93 -0.30 0.35 16 48 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 50 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 51 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 52 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 403.65 15.07 6.08 6.08 Total: -1.00 -30.63 403.65 -12.95 -43.58 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -9.61 Total: 0.43 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -3.45 Total: -23.53 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.95 Total: -43.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.63 -12.95 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268957197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.062 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds