Wall clock time and date at job start Tue Mar 31 2020 11:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.46946 * 2 1 4 4 C 1.53048 * 109.45547 * 240.09062 * 2 1 3 5 5 C 1.53115 * 109.27946 * 180.87651 * 4 2 1 6 6 H 1.09010 * 109.52195 * 297.62839 * 5 4 2 7 7 N 1.46892 * 109.52450 * 177.50007 * 5 4 2 8 8 C 1.46899 * 111.00285 * 155.12647 * 7 5 4 9 9 C 1.52995 * 109.47643 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47871 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47596 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99596 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99848 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00146 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99920 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46878 * 89.99942 * 15 13 11 17 17 H 1.48502 * 109.47101 * 209.99928 * 15 13 11 18 18 H 1.48500 * 109.47056 * 329.99975 * 15 13 11 19 19 C 1.53121 * 109.21076 * 57.55869 * 5 4 2 20 20 C 1.53032 * 109.27967 * 302.37904 * 19 5 4 21 21 N 1.46840 * 109.52469 * 59.17808 * 20 19 5 22 22 C 1.46902 * 111.00195 * 174.15741 * 21 20 19 23 23 C 1.50701 * 109.47235 * 294.75267 * 22 21 20 24 24 C 1.38240 * 119.99583 * 275.72925 * 23 22 21 25 25 C 1.38236 * 119.99546 * 179.76440 * 24 23 22 26 26 C 1.38237 * 120.00134 * 0.50799 * 25 24 23 27 27 C 1.38236 * 120.00067 * 359.74598 * 26 25 24 28 28 C 1.38235 * 119.99928 * 0.02562 * 27 26 25 29 29 H 1.09007 * 109.46863 * 306.30694 * 1 2 3 30 30 H 1.09005 * 109.46935 * 66.29731 * 1 2 3 31 31 H 1.08995 * 109.47734 * 186.30392 * 1 2 3 32 32 H 1.09003 * 109.55198 * 60.90301 * 4 2 1 33 33 H 1.08996 * 109.45229 * 300.78737 * 4 2 1 34 34 H 1.00901 * 111.00156 * 279.07682 * 7 5 4 35 35 H 1.09007 * 109.47187 * 300.00147 * 8 7 5 36 36 H 1.09001 * 109.47557 * 59.99618 * 8 7 5 37 37 H 1.08999 * 109.47390 * 300.00659 * 9 8 7 38 38 H 1.09010 * 109.47144 * 59.99745 * 9 8 7 39 39 H 1.09007 * 109.47178 * 300.00568 * 10 9 8 40 40 H 1.09003 * 109.47061 * 59.99437 * 10 9 8 41 41 H 0.97009 * 119.99790 * 180.02562 * 14 13 11 42 42 H 1.08998 * 109.50124 * 62.32682 * 19 5 4 43 43 H 1.09002 * 109.49691 * 182.43724 * 19 5 4 44 44 H 1.09006 * 109.46174 * 179.20003 * 20 19 5 45 45 H 1.09000 * 109.46647 * 299.17166 * 20 19 5 46 46 H 1.08997 * 109.47158 * 54.74915 * 22 21 20 47 47 H 1.08998 * 109.47482 * 174.74996 * 22 21 20 48 48 H 1.08003 * 120.00156 * 359.97438 * 24 23 22 49 49 H 1.07999 * 120.00215 * 180.22574 * 25 24 23 50 50 H 1.07994 * 120.00095 * 179.72116 * 26 25 24 51 51 H 1.08001 * 120.00337 * 179.97438 * 27 26 25 52 52 H 1.07998 * 120.00299 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7196 -1.2509 5 6 3.5707 -0.7364 -1.2358 6 1 3.9466 0.2863 -1.2679 7 7 4.0650 -1.4779 -2.4036 8 6 5.4220 -1.0470 -2.7651 9 6 5.9019 -1.8402 -3.9822 10 6 7.3150 -1.3910 -4.3591 11 6 7.7873 -2.1719 -5.5583 12 1 7.1441 -2.9146 -6.0065 13 6 9.0410 -1.9388 -6.0826 14 7 9.8245 -1.0346 -5.5364 15 14 9.6268 -2.9073 -7.5687 16 1 9.2459 -2.1871 -8.8103 17 1 11.1037 -3.0526 -7.5140 18 1 8.9965 -4.2518 -7.5631 19 6 4.0544 -1.4193 0.0464 20 6 3.4864 -0.6782 1.2588 21 7 2.0193 -0.6919 1.1993 22 6 1.4375 -0.1108 2.4165 23 6 1.7732 -0.9822 3.5993 24 6 0.9891 -2.0824 3.8919 25 6 1.2999 -2.8846 4.9739 26 6 2.3887 -2.5805 5.7696 27 6 3.1697 -1.4773 5.4801 28 6 2.8617 -0.6778 4.3953 29 1 -0.3633 0.6085 0.8282 30 1 -0.3633 0.4131 -0.9410 31 1 -0.3634 -1.0214 0.1128 32 1 1.6902 -0.1960 -2.1408 33 1 1.6646 -1.7429 -1.2592 34 1 4.0332 -2.4731 -2.2400 35 1 5.4140 0.0165 -3.0041 36 1 6.0955 -1.2258 -1.9268 37 1 5.9099 -2.9035 -3.7428 38 1 5.2285 -1.6618 -4.8207 39 1 7.3065 -0.3276 -4.5987 40 1 7.9886 -1.5690 -3.5208 41 1 10.7064 -0.8704 -5.9055 42 1 3.7120 -2.4541 0.0590 43 1 5.1436 -1.3954 0.0827 44 1 3.8175 -1.1705 2.1733 45 1 3.8403 0.3527 1.2530 46 1 1.8456 0.8876 2.5734 47 1 0.3548 -0.0476 2.3075 48 1 0.1356 -2.3173 3.2730 49 1 0.6895 -3.7463 5.2004 50 1 2.6289 -3.2046 6.6176 51 1 4.0201 -1.2394 6.1020 52 1 3.4716 0.1844 4.1694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268957197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:09 Heat of formation + Delta-G solvation = -10.235487 kcal Electronic energy + Delta-G solvation = -25989.376127 eV Core-core repulsion = 22565.564319 eV Total energy + Delta-G solvation = -3423.811807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94078 -39.70193 -37.69569 -35.77278 -34.24197 -33.56071 -32.43404 -31.71951 -30.84249 -28.39269 -27.63443 -26.40336 -24.39131 -23.87245 -23.24865 -22.28037 -22.09203 -21.51318 -20.62231 -18.48914 -17.65560 -17.06245 -16.75767 -16.58838 -16.40260 -16.13953 -15.82020 -15.76096 -15.29905 -14.99286 -14.93232 -14.44552 -14.25058 -14.03540 -13.72346 -13.60968 -13.57050 -13.43427 -13.17754 -12.94254 -12.85146 -12.71355 -12.64217 -12.47270 -12.30543 -12.21520 -11.90017 -11.87031 -11.70741 -11.64857 -11.53498 -11.39445 -11.30870 -10.94892 -10.56186 -9.77745 -9.65681 -9.30379 -9.23936 -8.20848 -6.32005 0.45305 0.54704 1.39478 1.41252 1.52456 2.40520 2.72373 3.12063 3.14869 3.17833 3.78385 3.79441 3.92633 3.97113 4.06809 4.15276 4.19458 4.23930 4.29918 4.35445 4.40088 4.41718 4.48547 4.53396 4.56936 4.63192 4.69592 4.71781 4.80407 4.84176 4.89167 4.96668 4.97808 5.04635 5.08577 5.13741 5.15481 5.19947 5.20651 5.26885 5.29528 5.44491 5.51796 5.60222 5.66597 5.73193 5.74145 5.84913 6.09222 6.11038 6.14206 6.20270 6.26938 6.49791 6.84859 7.37208 8.91111 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002057 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.953297 B =13605.651248 C =14443.833339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.036 0.964 4 C -0.089 4.089 5 C 0.087 3.913 6 H 0.061 0.939 7 N -0.684 5.684 8 C 0.075 3.925 9 C -0.092 4.092 10 C 0.025 3.975 11 C -0.543 4.543 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.263 1.263 19 C -0.138 4.138 20 C 0.066 3.934 21 N -0.529 5.529 22 C 0.091 3.909 23 C -0.086 4.086 24 C -0.108 4.108 25 C -0.130 4.130 26 C -0.131 4.131 27 C -0.132 4.132 28 C -0.128 4.128 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.343 0.657 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.050 0.950 38 H 0.052 0.948 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.264 0.736 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.029 0.971 46 H 0.040 0.960 47 H 0.101 0.899 48 H 0.129 0.871 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.133 0.867 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.906 0.721 23.266 31.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 H 0.054 0.946 4 C -0.127 4.127 5 C -0.023 4.023 6 H 0.080 0.920 7 N -0.314 5.314 8 C -0.054 4.054 9 C -0.130 4.130 10 C -0.012 4.012 11 C -0.581 4.581 12 H 0.078 0.922 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.178 4.178 20 C -0.063 4.063 21 N -0.254 5.254 22 C -0.036 4.036 23 C -0.086 4.086 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.149 4.149 27 C -0.149 4.149 28 C -0.146 4.146 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.119 0.881 48 H 0.147 0.853 49 H 0.155 0.845 50 H 0.154 0.846 51 H 0.151 0.849 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.206 0.743 22.731 31.786 hybrid contribution 1.826 0.217 0.020 1.839 sum -20.380 0.960 22.751 30.559 Atomic orbital electron populations 1.21877 0.92671 1.02823 1.02568 1.21630 0.96528 0.94917 0.89391 0.94603 1.21517 0.93039 1.01568 0.96597 1.21652 0.96189 0.96934 0.87489 0.92045 1.60591 1.23078 1.09952 1.37771 1.21819 0.88347 0.99139 0.96144 1.21373 0.96303 0.98598 0.96729 1.18968 0.92353 0.95013 0.94882 1.21699 1.00743 1.21394 1.14236 0.92211 1.26021 0.97008 0.96441 1.00597 1.70104 1.09825 1.34807 1.42720 0.85420 0.77318 0.79182 0.78966 1.19708 1.20645 1.18713 1.22224 0.99606 1.00593 0.95351 1.21942 0.87688 0.98336 0.98331 1.61988 1.06608 1.55178 1.01599 1.21150 1.01279 0.94237 0.86950 1.19859 0.95813 0.96874 0.96100 1.21194 0.99970 0.94311 0.97144 1.21442 0.97883 1.00075 0.95382 1.21443 0.95514 0.97581 1.00324 1.21376 1.00292 0.95585 0.97696 1.21241 0.97195 1.00335 0.95838 0.91558 0.91300 0.91677 0.91022 0.91310 0.83813 0.92381 0.96107 0.93153 0.92877 0.99138 0.99187 0.92764 0.91227 0.92642 0.90589 0.95291 0.94129 0.88103 0.85258 0.84522 0.84567 0.84897 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.56 71.98 0.62 -1.25 16 2 C 0.08 1.45 2.44 44.94 0.11 1.56 16 3 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 4 C -0.09 -1.83 4.99 30.65 0.15 -1.68 16 5 C 0.09 2.14 2.53 45.00 0.11 2.26 16 6 H 0.06 1.63 7.80 -2.38 -0.02 1.62 16 7 N -0.68 -19.96 6.25 -491.17 -3.07 -23.03 16 8 C 0.07 2.66 5.49 86.30 0.47 3.13 16 9 C -0.09 -3.94 5.41 30.59 0.17 -3.77 16 10 C 0.03 1.39 4.97 29.85 0.15 1.54 16 11 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 12 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 13 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 14 N -0.93 -58.00 13.29 21.44 0.28 -57.71 16 15 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 19 C -0.14 -3.18 5.35 30.65 0.16 -3.01 16 20 C 0.07 1.32 5.21 86.33 0.45 1.77 16 21 N -0.53 -9.44 4.49 -875.66 -3.93 -13.37 16 22 C 0.09 1.38 4.81 85.56 0.41 1.79 16 23 C -0.09 -1.41 4.68 -19.86 -0.09 -1.51 16 24 C -0.11 -1.69 9.73 22.27 0.22 -1.47 16 25 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 26 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 27 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 28 C -0.13 -2.08 8.26 22.27 0.18 -1.89 16 29 H 0.07 0.72 6.51 -2.38 -0.02 0.70 16 30 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.34 9.51 8.45 -89.69 -0.76 8.75 16 35 H 0.06 2.15 8.06 -2.38 -0.02 2.13 16 36 H 0.02 0.75 7.50 -2.39 -0.02 0.73 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 39 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 42 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 43 H 0.05 1.39 7.53 -2.39 -0.02 1.37 16 44 H 0.08 1.56 6.09 -2.38 -0.01 1.55 16 45 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.04 0.61 8.03 -2.39 -0.02 0.59 16 47 H 0.10 1.28 5.80 -2.39 -0.01 1.27 16 48 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 49 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 50 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 51 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 52 H 0.12 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -65.42 403.65 -0.11 -65.53 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.10 Total: 20.33 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 4.48 Total: -38.86 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -6.72 Total: -94.12 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.42 -0.11 -65.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268957197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.295 kcal (2) G-P(sol) polarization free energy of solvation -65.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds