Wall clock time and date at job start Tue Mar 31 2020 11:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46222 * 2 1 4 4 C 1.53040 * 109.46439 * 119.96749 * 2 1 3 5 5 C 1.53198 * 109.30194 * 179.19236 * 4 2 1 6 6 H 1.09004 * 109.51072 * 62.24548 * 5 4 2 7 7 N 1.46892 * 109.57551 * 182.46124 * 5 4 2 8 8 C 1.46903 * 110.99718 * 204.66674 * 7 5 4 9 9 C 1.53005 * 109.46857 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47198 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47526 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99485 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00041 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00424 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99844 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47411 * 59.99626 * 15 13 11 17 17 H 1.48499 * 109.47104 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.46928 * 299.99998 * 15 13 11 19 19 C 1.53117 * 109.11753 * 302.37567 * 5 4 2 20 20 C 1.53037 * 109.31471 * 57.63310 * 19 5 4 21 21 N 1.46845 * 109.52204 * 300.80013 * 20 19 5 22 22 C 1.46904 * 111.00027 * 185.83501 * 21 20 19 23 23 C 1.50704 * 109.46699 * 65.36193 * 22 21 20 24 24 C 1.38229 * 119.99770 * 264.63049 * 23 22 21 25 25 C 1.38240 * 119.99806 * 179.80893 * 24 23 22 26 26 C 1.38236 * 119.99791 * 0.42047 * 25 24 23 27 27 C 1.38230 * 120.00160 * 359.81418 * 26 25 24 28 28 C 1.38231 * 120.00088 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47173 * 173.00579 * 1 2 3 30 30 H 1.08997 * 109.46643 * 293.00881 * 1 2 3 31 31 H 1.09004 * 109.46770 * 53.00644 * 1 2 3 32 32 H 1.08995 * 109.50093 * 299.13794 * 4 2 1 33 33 H 1.09008 * 109.49995 * 59.21024 * 4 2 1 34 34 H 1.00893 * 111.00556 * 80.71106 * 7 5 4 35 35 H 1.08997 * 109.47104 * 299.99663 * 8 7 5 36 36 H 1.08996 * 109.47844 * 59.99849 * 8 7 5 37 37 H 1.09003 * 109.47290 * 299.99506 * 9 8 7 38 38 H 1.08999 * 109.47181 * 59.99812 * 9 8 7 39 39 H 1.09003 * 109.46832 * 300.00075 * 10 9 8 40 40 H 1.09005 * 109.47577 * 59.99660 * 10 9 8 41 41 H 0.96998 * 120.00376 * 179.97438 * 14 13 11 42 42 H 1.09003 * 109.50057 * 297.67003 * 19 5 4 43 43 H 1.09005 * 109.50313 * 177.59519 * 19 5 4 44 44 H 1.09000 * 109.46075 * 60.81648 * 20 19 5 45 45 H 1.08998 * 109.45919 * 180.79856 * 20 19 5 46 46 H 1.08998 * 109.47092 * 185.35717 * 22 21 20 47 47 H 1.08997 * 109.47322 * 305.36419 * 22 21 20 48 48 H 1.07997 * 120.00154 * 359.97438 * 24 23 22 49 49 H 1.08003 * 119.99804 * 180.20173 * 25 24 23 50 50 H 1.08003 * 119.99577 * 179.78549 * 26 25 24 51 51 H 1.07996 * 120.00392 * 179.97438 * 27 26 25 52 52 H 1.08005 * 120.00659 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7208 1.2500 5 6 3.5718 -0.7363 1.2361 6 1 3.9466 0.2869 1.2676 7 7 4.0671 -1.4780 2.4033 8 6 5.4255 -1.0489 2.7620 9 6 5.9063 -1.8423 3.9787 10 6 7.3213 -1.3959 4.3520 11 6 7.7947 -2.1769 5.5507 12 1 7.1509 -2.9178 6.0010 13 6 9.0502 -1.9461 6.0719 14 7 9.8344 -1.0442 5.5233 15 14 9.6372 -2.9148 7.5574 16 1 9.6444 -4.3637 7.2323 17 1 11.0105 -2.4814 7.9198 18 1 8.7229 -2.6688 8.7016 19 6 4.0548 -1.4188 -0.0466 20 6 3.4865 -0.6778 -1.2590 21 7 2.0193 -0.6919 -1.1994 22 6 1.4373 -0.1107 -2.4166 23 6 1.7710 -0.9835 -3.5990 24 6 2.8671 -0.6890 -4.3879 25 6 3.1754 -1.4919 -5.4702 26 6 2.3825 -2.5842 -5.7686 27 6 1.2836 -2.8759 -4.9824 28 6 0.9778 -2.0756 -3.8976 29 1 -0.3633 -1.0200 -0.1251 30 1 -0.3632 0.4017 0.9459 31 1 -0.3633 0.6184 -0.8208 32 1 1.6896 -0.1980 2.1399 33 1 1.6653 -1.7444 1.2582 34 1 4.0335 -2.4731 2.2404 35 1 6.0971 -1.2292 1.9227 36 1 5.4196 0.0147 3.0006 37 1 5.2349 -1.6624 4.8184 38 1 5.9124 -2.9057 3.7397 39 1 7.9925 -1.5761 3.5123 40 1 7.3158 -0.3323 4.5909 41 1 10.7175 -0.8816 5.8902 42 1 3.7125 -2.4536 -0.0592 43 1 5.1440 -1.3953 -0.0834 44 1 3.8404 0.3532 -1.2532 45 1 3.8174 -1.1702 -2.1734 46 1 0.3548 -0.0461 -2.3066 47 1 1.8467 0.8870 -2.5745 48 1 3.4842 0.1668 -4.1573 49 1 4.0338 -1.2636 -6.0847 50 1 2.6214 -3.2094 -6.6162 51 1 0.6638 -3.7290 -5.2157 52 1 0.1189 -2.3032 -3.2836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268957198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:12 Heat of formation + Delta-G solvation = 6.497074 kcal Electronic energy + Delta-G solvation = -25988.663089 eV Core-core repulsion = 22565.576860 eV Total energy + Delta-G solvation = -3423.086229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18974 -38.96422 -36.49543 -34.07375 -33.06733 -32.35193 -31.26690 -31.10204 -29.61689 -27.36958 -26.33758 -25.27666 -23.23675 -22.68783 -22.38913 -21.47533 -20.85659 -20.26571 -19.59818 -17.06433 -16.32615 -16.17281 -15.93759 -15.59910 -15.18345 -14.92201 -14.77292 -14.43669 -14.28195 -14.07279 -13.83274 -13.65814 -13.13707 -12.92529 -12.82082 -12.54220 -12.37608 -12.21889 -12.09121 -11.95254 -11.67595 -11.55485 -11.35601 -11.24653 -11.12736 -10.90768 -10.82177 -10.63555 -10.56477 -10.53035 -10.32278 -9.65479 -9.28456 -9.16988 -9.04064 -9.02151 -8.50017 -8.31222 -8.05808 -5.96512 -3.98511 1.06079 1.14911 3.35942 3.38607 3.39776 3.42768 3.85145 4.29823 4.45625 4.50037 4.56761 4.69198 4.75162 4.77872 4.85251 4.88309 5.03548 5.04994 5.19194 5.21979 5.28273 5.34675 5.37430 5.39097 5.40742 5.49980 5.60561 5.67167 5.73266 5.75389 5.77964 5.80804 5.89352 5.93096 5.97545 6.02128 6.17768 6.21674 6.25261 6.29349 6.35867 6.37245 6.72532 6.76785 6.83174 6.87471 6.94148 7.17909 7.41883 7.69816 7.72376 7.87545 8.04073 8.47581 9.08554 9.65210 11.14928 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019525 B = 0.002058 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.716609 B =13602.289741 C =14443.866771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.082 3.918 3 H 0.040 0.960 4 C -0.096 4.096 5 C 0.086 3.914 6 H 0.070 0.930 7 N -0.685 5.685 8 C 0.060 3.940 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.145 4.145 20 C 0.059 3.941 21 N -0.526 5.526 22 C 0.087 3.913 23 C -0.075 4.075 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.097 4.097 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.338 0.662 35 H 0.023 0.977 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.013 0.987 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.031 0.969 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.039 0.961 48 H 0.117 0.883 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.576 1.613 -22.955 30.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 H 0.057 0.943 4 C -0.135 4.135 5 C -0.024 4.024 6 H 0.089 0.911 7 N -0.315 5.315 8 C -0.069 4.069 9 C -0.145 4.145 10 C -0.015 4.015 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.185 4.185 20 C -0.069 4.069 21 N -0.251 5.251 22 C -0.040 4.040 23 C -0.076 4.076 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.116 4.116 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.058 0.942 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.846 1.642 -22.403 30.646 hybrid contribution 1.399 -0.084 -0.052 1.403 sum -19.447 1.559 -22.455 29.746 Atomic orbital electron populations 1.21921 0.94336 1.02540 1.01695 1.21649 0.95271 0.95518 0.90233 0.94252 1.21604 0.94675 1.01492 0.95700 1.21622 0.94972 0.97783 0.88072 0.91132 1.60634 1.25122 1.09403 1.36304 1.22136 0.86744 1.00212 0.97765 1.21622 0.99558 0.97983 0.95337 1.19058 0.89626 0.96638 0.96198 1.21227 1.00006 1.21059 1.13393 0.92721 1.25033 0.96878 0.95406 0.97254 1.69954 1.09245 1.33354 1.41117 0.86654 0.77717 0.80376 0.83219 1.20265 1.21335 1.20222 1.22331 1.00300 1.00686 0.95153 1.22060 0.86915 0.98748 0.99202 1.62010 1.07324 1.54800 1.00950 1.21134 1.00728 0.94377 0.87734 1.19757 0.95441 0.96524 0.95838 1.21086 0.96926 0.99894 0.95500 1.21123 0.99703 0.95528 0.97590 1.21151 0.95523 0.97571 0.99838 1.21161 0.97602 0.99636 0.95618 1.21005 0.99638 0.94268 0.96648 0.91578 0.91855 0.92822 0.90863 0.91070 0.84393 0.95854 0.91706 0.92601 0.93695 0.96873 0.96650 0.93009 0.90999 0.91519 0.95099 0.90496 0.89292 0.94232 0.86450 0.86205 0.86292 0.86179 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.54 37.16 0.32 -0.80 16 2 C 0.08 0.76 2.44 -67.72 -0.17 0.60 16 3 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.10 -1.05 4.99 -26.61 -0.13 -1.18 16 5 C 0.09 1.08 2.54 -67.55 -0.17 0.90 16 6 H 0.07 0.95 7.81 -51.93 -0.41 0.54 16 7 N -0.69 -10.17 6.26 -106.55 -0.67 -10.84 16 8 C 0.06 1.06 5.49 -3.82 -0.02 1.04 16 9 C -0.11 -2.27 5.41 -26.73 -0.14 -2.42 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 15 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 C -0.15 -1.69 5.34 -26.65 -0.14 -1.84 16 20 C 0.06 0.61 5.21 -3.84 -0.02 0.59 16 21 N -0.53 -5.03 4.49 -228.11 -1.02 -6.05 16 22 C 0.09 0.73 4.82 -4.97 -0.02 0.70 16 23 C -0.08 -0.66 4.71 -104.62 -0.49 -1.15 16 24 C -0.12 -0.99 8.21 -39.58 -0.32 -1.31 16 25 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 26 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 27 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 28 C -0.10 -0.82 9.72 -39.58 -0.38 -1.21 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.36 6.55 -51.93 -0.34 0.02 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.34 4.83 8.45 -39.30 -0.33 4.49 16 35 H 0.02 0.41 7.49 -51.93 -0.39 0.02 16 36 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.81 6.06 -51.93 -0.31 0.50 16 46 H 0.09 0.65 5.81 -51.93 -0.30 0.35 16 47 H 0.04 0.32 8.03 -51.93 -0.42 -0.09 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 49 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 50 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 51 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 52 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 403.61 15.07 6.08 6.08 Total: -1.00 -30.60 403.61 -12.95 -43.56 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -9.61 Total: 0.47 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -3.45 Total: -23.54 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.95 Total: -43.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.60 -12.95 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268957198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.055 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds