Wall clock time and date at job start Tue Mar 31 2020 11:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46222 * 2 1 4 4 C 1.53040 * 109.46439 * 119.96749 * 2 1 3 5 5 C 1.53198 * 109.30194 * 179.19236 * 4 2 1 6 6 H 1.09004 * 109.51072 * 62.24548 * 5 4 2 7 7 N 1.46892 * 109.57551 * 182.46124 * 5 4 2 8 8 C 1.46903 * 110.99718 * 204.66674 * 7 5 4 9 9 C 1.53005 * 109.46857 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47198 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47526 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99485 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00041 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00424 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99844 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47411 * 59.99626 * 15 13 11 17 17 H 1.48499 * 109.47104 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.46928 * 299.99998 * 15 13 11 19 19 C 1.53117 * 109.11753 * 302.37567 * 5 4 2 20 20 C 1.53037 * 109.31471 * 57.63310 * 19 5 4 21 21 N 1.46845 * 109.52204 * 300.80013 * 20 19 5 22 22 C 1.46904 * 111.00027 * 185.83501 * 21 20 19 23 23 C 1.50704 * 109.46699 * 65.36193 * 22 21 20 24 24 C 1.38229 * 119.99770 * 264.63049 * 23 22 21 25 25 C 1.38240 * 119.99806 * 179.80893 * 24 23 22 26 26 C 1.38236 * 119.99791 * 0.42047 * 25 24 23 27 27 C 1.38230 * 120.00160 * 359.81418 * 26 25 24 28 28 C 1.38231 * 120.00088 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47173 * 173.00579 * 1 2 3 30 30 H 1.08997 * 109.46643 * 293.00881 * 1 2 3 31 31 H 1.09004 * 109.46770 * 53.00644 * 1 2 3 32 32 H 1.08995 * 109.50093 * 299.13794 * 4 2 1 33 33 H 1.09008 * 109.49995 * 59.21024 * 4 2 1 34 34 H 1.00893 * 111.00556 * 80.71106 * 7 5 4 35 35 H 1.08997 * 109.47104 * 299.99663 * 8 7 5 36 36 H 1.08996 * 109.47844 * 59.99849 * 8 7 5 37 37 H 1.09003 * 109.47290 * 299.99506 * 9 8 7 38 38 H 1.08999 * 109.47181 * 59.99812 * 9 8 7 39 39 H 1.09003 * 109.46832 * 300.00075 * 10 9 8 40 40 H 1.09005 * 109.47577 * 59.99660 * 10 9 8 41 41 H 0.96998 * 120.00376 * 179.97438 * 14 13 11 42 42 H 1.09003 * 109.50057 * 297.67003 * 19 5 4 43 43 H 1.09005 * 109.50313 * 177.59519 * 19 5 4 44 44 H 1.09000 * 109.46075 * 60.81648 * 20 19 5 45 45 H 1.08998 * 109.45919 * 180.79856 * 20 19 5 46 46 H 1.08998 * 109.47092 * 185.35717 * 22 21 20 47 47 H 1.08997 * 109.47322 * 305.36419 * 22 21 20 48 48 H 1.07997 * 120.00154 * 359.97438 * 24 23 22 49 49 H 1.08003 * 119.99804 * 180.20173 * 25 24 23 50 50 H 1.08003 * 119.99577 * 179.78549 * 26 25 24 51 51 H 1.07996 * 120.00392 * 179.97438 * 27 26 25 52 52 H 1.08005 * 120.00659 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7208 1.2500 5 6 3.5718 -0.7363 1.2361 6 1 3.9466 0.2869 1.2676 7 7 4.0671 -1.4780 2.4033 8 6 5.4255 -1.0489 2.7620 9 6 5.9063 -1.8423 3.9787 10 6 7.3213 -1.3959 4.3520 11 6 7.7947 -2.1769 5.5507 12 1 7.1509 -2.9178 6.0010 13 6 9.0502 -1.9461 6.0719 14 7 9.8344 -1.0442 5.5233 15 14 9.6372 -2.9148 7.5574 16 1 9.6444 -4.3637 7.2323 17 1 11.0105 -2.4814 7.9198 18 1 8.7229 -2.6688 8.7016 19 6 4.0548 -1.4188 -0.0466 20 6 3.4865 -0.6778 -1.2590 21 7 2.0193 -0.6919 -1.1994 22 6 1.4373 -0.1107 -2.4166 23 6 1.7710 -0.9835 -3.5990 24 6 2.8671 -0.6890 -4.3879 25 6 3.1754 -1.4919 -5.4702 26 6 2.3825 -2.5842 -5.7686 27 6 1.2836 -2.8759 -4.9824 28 6 0.9778 -2.0756 -3.8976 29 1 -0.3633 -1.0200 -0.1251 30 1 -0.3632 0.4017 0.9459 31 1 -0.3633 0.6184 -0.8208 32 1 1.6896 -0.1980 2.1399 33 1 1.6653 -1.7444 1.2582 34 1 4.0335 -2.4731 2.2404 35 1 6.0971 -1.2292 1.9227 36 1 5.4196 0.0147 3.0006 37 1 5.2349 -1.6624 4.8184 38 1 5.9124 -2.9057 3.7397 39 1 7.9925 -1.5761 3.5123 40 1 7.3158 -0.3323 4.5909 41 1 10.7175 -0.8816 5.8902 42 1 3.7125 -2.4536 -0.0592 43 1 5.1440 -1.3953 -0.0834 44 1 3.8404 0.3532 -1.2532 45 1 3.8174 -1.1702 -2.1734 46 1 0.3548 -0.0461 -2.3066 47 1 1.8467 0.8870 -2.5745 48 1 3.4842 0.1668 -4.1573 49 1 4.0338 -1.2636 -6.0847 50 1 2.6214 -3.2094 -6.6162 51 1 0.6638 -3.7290 -5.2157 52 1 0.1189 -2.3032 -3.2836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268957198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:11 Heat of formation + Delta-G solvation = -10.203324 kcal Electronic energy + Delta-G solvation = -25989.387273 eV Core-core repulsion = 22565.576860 eV Total energy + Delta-G solvation = -3423.810413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94023 -39.70096 -37.69503 -35.77103 -34.24117 -33.56079 -32.43363 -31.71916 -30.84186 -28.39169 -27.63236 -26.40335 -24.38969 -23.87610 -23.24467 -22.27958 -22.09136 -21.51479 -20.62491 -18.48528 -17.65478 -17.06155 -16.75747 -16.58985 -16.40499 -16.13818 -15.81991 -15.75984 -15.29996 -14.99049 -14.93498 -14.43864 -14.25082 -14.03253 -13.72543 -13.61028 -13.56968 -13.43292 -13.17910 -12.93212 -12.85276 -12.70536 -12.62983 -12.48558 -12.31676 -12.21622 -11.90080 -11.87108 -11.70738 -11.64673 -11.53268 -11.39343 -11.31869 -10.95084 -10.55592 -9.77763 -9.65847 -9.30343 -9.23924 -8.20523 -6.31816 0.45301 0.54661 1.39523 1.43095 1.50999 2.40722 2.72347 3.12256 3.14988 3.17860 3.78496 3.79386 3.92477 3.97069 4.06823 4.15341 4.19426 4.23940 4.29832 4.35424 4.40065 4.41704 4.48404 4.53397 4.56889 4.63200 4.69571 4.71758 4.80372 4.84160 4.89131 4.96668 4.97878 5.04621 5.08517 5.13769 5.15411 5.19910 5.20632 5.26883 5.29438 5.44479 5.51695 5.60181 5.66564 5.73214 5.74215 5.84947 6.09215 6.10981 6.14168 6.20246 6.27021 6.49826 6.84848 7.37321 8.91241 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019525 B = 0.002058 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.716609 B =13602.289741 C =14443.866771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.036 0.964 4 C -0.089 4.089 5 C 0.087 3.913 6 H 0.061 0.939 7 N -0.684 5.684 8 C 0.075 3.925 9 C -0.092 4.092 10 C 0.026 3.974 11 C -0.544 4.544 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.267 1.267 19 C -0.138 4.138 20 C 0.065 3.935 21 N -0.528 5.528 22 C 0.091 3.909 23 C -0.086 4.086 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.131 4.131 27 C -0.130 4.130 28 C -0.108 4.108 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.343 0.657 35 H 0.021 0.979 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.050 0.950 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.264 0.736 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.029 0.971 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.041 0.959 48 H 0.121 0.879 49 H 0.133 0.867 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.936 0.738 -23.225 31.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 H 0.054 0.946 4 C -0.127 4.127 5 C -0.023 4.023 6 H 0.080 0.920 7 N -0.314 5.314 8 C -0.054 4.054 9 C -0.130 4.130 10 C -0.012 4.012 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.178 4.178 20 C -0.063 4.063 21 N -0.254 5.254 22 C -0.036 4.036 23 C -0.086 4.086 24 C -0.146 4.146 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.148 4.148 28 C -0.126 4.126 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.008 0.992 40 H 0.009 0.991 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.094 0.906 46 H 0.119 0.881 47 H 0.059 0.941 48 H 0.139 0.861 49 H 0.151 0.849 50 H 0.154 0.846 51 H 0.155 0.845 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.231 0.764 -22.687 31.773 hybrid contribution 1.821 0.202 -0.027 1.832 sum -20.410 0.967 -22.715 30.553 Atomic orbital electron populations 1.21877 0.92668 1.02816 1.02573 1.21635 0.96530 0.94917 0.89386 0.94589 1.21530 0.93033 1.01560 0.96604 1.21662 0.96177 0.96937 0.87483 0.92025 1.60582 1.22949 1.09990 1.37864 1.21818 0.88326 0.99150 0.96154 1.21374 0.96287 0.98605 0.96735 1.18963 0.92341 0.95009 0.94874 1.21672 1.00639 1.21550 1.14333 0.92202 1.26019 0.97011 0.96421 1.00589 1.70090 1.09701 1.34840 1.42809 0.85478 0.77300 0.79032 0.79101 1.19095 1.20756 1.19140 1.22227 0.99606 1.00594 0.95364 1.21948 0.87693 0.98341 0.98340 1.62002 1.06600 1.55169 1.01600 1.21151 1.01282 0.94229 0.86958 1.19858 0.95758 0.96910 0.96114 1.21239 0.97158 1.00310 0.95899 1.21378 1.00278 0.95615 0.97684 1.21443 0.95384 0.97674 1.00361 1.21438 0.97868 1.00072 0.95396 1.21195 0.99980 0.94365 0.97098 0.91670 0.91298 0.91566 0.91040 0.91306 0.83809 0.96105 0.92377 0.92876 0.93148 0.99202 0.99146 0.92753 0.91241 0.92654 0.95281 0.90571 0.88111 0.94124 0.86114 0.84904 0.84565 0.84511 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.54 71.98 0.61 -1.25 16 2 C 0.08 1.45 2.44 44.94 0.11 1.56 16 3 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 4 C -0.09 -1.83 4.99 30.67 0.15 -1.68 16 5 C 0.09 2.14 2.54 45.02 0.11 2.26 16 6 H 0.06 1.64 7.81 -2.38 -0.02 1.62 16 7 N -0.68 -19.96 6.26 -491.03 -3.07 -23.03 16 8 C 0.07 2.66 5.49 86.30 0.47 3.13 16 9 C -0.09 -3.94 5.41 30.60 0.17 -3.77 16 10 C 0.03 1.40 4.97 29.85 0.15 1.55 16 11 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 12 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 13 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 14 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16 15 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 C -0.14 -3.18 5.34 30.65 0.16 -3.02 16 20 C 0.07 1.32 5.21 86.33 0.45 1.77 16 21 N -0.53 -9.44 4.49 -875.61 -3.93 -13.37 16 22 C 0.09 1.38 4.82 85.56 0.41 1.79 16 23 C -0.09 -1.41 4.71 -19.86 -0.09 -1.51 16 24 C -0.13 -2.08 8.21 22.27 0.18 -1.90 16 25 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 26 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 27 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 28 C -0.11 -1.69 9.72 22.27 0.22 -1.47 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.71 6.55 -2.39 -0.02 0.70 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.34 9.51 8.45 -89.70 -0.76 8.76 16 35 H 0.02 0.75 7.49 -2.39 -0.02 0.73 16 36 H 0.06 2.15 8.06 -2.39 -0.02 2.13 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 41 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 43 H 0.05 1.39 7.52 -2.38 -0.02 1.37 16 44 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 1.57 6.06 -2.39 -0.01 1.55 16 46 H 0.10 1.28 5.81 -2.39 -0.01 1.27 16 47 H 0.04 0.61 8.03 -2.39 -0.02 0.59 16 48 H 0.12 1.79 8.06 -2.91 -0.02 1.76 16 49 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 50 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 51 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 52 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -65.40 403.61 -0.11 -65.51 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.10 Total: 20.45 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 4.48 Total: -38.92 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -6.72 Total: -94.13 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.40 -0.11 -65.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268957198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.304 kcal (2) G-P(sol) polarization free energy of solvation -65.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds