Wall clock time and date at job start Tue Mar 31 2020 11:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47214 * 2 1 4 4 N 1.46901 * 109.47426 * 120.00682 * 2 1 3 5 5 C 1.46904 * 110.99637 * 274.99933 * 4 2 1 6 6 C 1.52997 * 109.47265 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47415 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47057 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00538 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99661 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00186 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00030 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 89.99863 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00044 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00037 * 12 10 8 16 16 C 1.53007 * 109.47153 * 239.99912 * 2 1 3 17 17 H 1.08993 * 110.28887 * 184.32283 * 16 2 1 18 18 C 1.54263 * 110.32527 * 306.46040 * 16 2 1 19 19 C 1.54372 * 105.06433 * 118.89149 * 18 16 2 20 20 N 1.48568 * 104.59384 * 23.85159 * 19 18 16 21 21 C 1.46898 * 111.00060 * 200.95893 * 20 19 18 22 22 C 1.50706 * 109.47169 * 69.87369 * 21 20 19 23 23 C 1.38241 * 119.99842 * 269.73137 * 22 21 20 24 24 C 1.38236 * 119.99479 * 179.78752 * 23 22 21 25 25 C 1.38231 * 120.00085 * 0.43799 * 24 23 22 26 26 C 1.38238 * 120.00314 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99995 * 89.99990 * 22 21 20 28 28 C 1.48556 * 104.22220 * 320.51708 * 20 19 18 29 29 H 1.09004 * 109.47287 * 59.99727 * 1 2 3 30 30 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46963 * 299.99863 * 1 2 3 32 32 H 1.00891 * 111.00828 * 151.04308 * 4 2 1 33 33 H 1.09002 * 109.47117 * 59.99370 * 5 4 2 34 34 H 1.08998 * 109.47117 * 299.99488 * 5 4 2 35 35 H 1.09002 * 109.47302 * 59.99808 * 6 5 4 36 36 H 1.08998 * 109.46899 * 299.99946 * 6 5 4 37 37 H 1.09002 * 109.46997 * 59.99676 * 7 6 5 38 38 H 1.09000 * 109.46625 * 300.00101 * 7 6 5 39 39 H 0.97001 * 119.99697 * 359.97438 * 11 10 8 40 40 H 1.09001 * 110.32019 * 237.79120 * 18 16 2 41 41 H 1.08998 * 110.32038 * 359.89290 * 18 16 2 42 42 H 1.08995 * 110.41119 * 142.62547 * 19 18 16 43 43 H 1.08996 * 110.41581 * 265.07606 * 19 18 16 44 44 H 1.08999 * 109.47186 * 189.87475 * 21 20 19 45 45 H 1.09001 * 109.47013 * 309.87926 * 21 20 19 46 46 H 1.08000 * 120.00047 * 359.97438 * 23 22 21 47 47 H 1.08005 * 119.99544 * 180.27217 * 24 23 22 48 48 H 1.08003 * 119.99845 * 179.83332 * 25 24 23 49 49 H 1.07997 * 120.00232 * 180.02562 * 26 25 24 50 50 H 1.07997 * 120.00112 * 359.97438 * 27 22 21 51 51 H 1.09006 * 110.41385 * 280.70506 * 28 20 19 52 52 H 1.08995 * 110.41488 * 158.26125 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2224 2.3469 6 6 2.5951 -0.5334 3.5744 7 6 2.6611 0.4198 4.7694 8 6 3.1667 -0.3245 5.9783 9 1 3.4156 -1.3727 5.9021 10 6 3.3114 0.3326 7.1817 11 7 3.0089 1.6092 7.2744 12 14 3.9374 -0.5901 8.6804 13 1 5.4186 -0.4980 8.7355 14 1 3.5332 -2.0161 8.5883 15 1 3.3581 0.0102 9.9090 16 6 2.0400 -0.7213 -1.2493 17 1 3.1271 -0.7963 -1.2251 18 6 1.4081 -2.1247 -1.3532 19 6 0.6194 -2.1124 -2.6802 20 7 1.2763 -1.0589 -3.4963 21 6 0.3788 -0.5766 -4.5544 22 6 -0.7465 0.2134 -3.9373 23 6 -1.9150 -0.4241 -3.5640 24 6 -2.9454 0.2999 -2.9939 25 6 -2.8109 1.6626 -2.8054 26 6 -1.6445 2.3010 -3.1834 27 6 -0.6124 1.5763 -3.7496 28 6 1.5798 0.0210 -2.5224 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.9172 -1.1206 1.0287 33 1 1.0871 0.6162 2.5525 34 1 2.7589 1.0460 2.1182 35 1 3.5904 -0.9274 3.3690 36 1 1.9184 -1.3567 3.8029 37 1 1.6660 0.8142 4.9749 38 1 3.3381 1.2429 4.5406 39 1 2.6842 2.0884 6.4961 40 1 2.1852 -2.8886 -1.3817 41 1 0.7361 -2.3004 -0.5132 42 1 0.6950 -3.0799 -3.1764 43 1 -0.4248 -1.8573 -2.4995 44 1 0.9361 0.0606 -5.2411 45 1 -0.0307 -1.4272 -5.0993 46 1 -2.0216 -1.4882 -3.7150 47 1 -3.8566 -0.1989 -2.6982 48 1 -3.6171 2.2287 -2.3624 49 1 -1.5392 3.3656 -3.0357 50 1 0.2989 2.0750 -4.0448 51 1 0.6859 0.6099 -2.3169 52 1 2.3785 0.6597 -2.8996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272528278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:21 Heat of formation + Delta-G solvation = 13.980410 kcal Electronic energy + Delta-G solvation = -26715.307858 eV Core-core repulsion = 23292.546131 eV Total energy + Delta-G solvation = -3422.761727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68517 -38.82657 -36.76153 -34.52171 -33.16203 -31.74232 -31.32969 -29.95281 -29.32270 -28.27309 -26.21313 -25.33324 -23.27591 -22.80003 -22.08651 -21.81671 -20.72903 -20.45838 -19.06406 -17.17158 -16.70806 -16.49677 -16.16979 -15.57057 -15.47493 -15.28199 -14.75672 -14.37813 -14.09656 -13.80639 -13.72631 -13.69927 -13.26374 -13.14162 -12.86924 -12.55893 -12.31607 -12.01740 -11.82722 -11.77216 -11.71924 -11.60626 -11.48531 -11.30106 -11.24561 -11.03964 -10.81747 -10.60773 -10.49333 -10.39552 -10.10038 -9.79186 -9.67889 -9.21361 -9.06078 -8.71424 -8.49200 -8.28588 -8.18387 -6.32490 -4.00748 0.98466 1.05843 3.41184 3.45687 3.49781 3.65577 3.83177 4.18253 4.38779 4.47453 4.57550 4.58655 4.67565 4.74360 4.76853 4.79654 4.95899 5.10291 5.15894 5.22699 5.25246 5.34447 5.39580 5.44842 5.45208 5.50427 5.53551 5.66554 5.68273 5.70543 5.75143 5.80192 5.88256 5.93834 5.98648 6.07239 6.10842 6.11960 6.19815 6.22492 6.25712 6.41492 6.60743 6.63239 6.65509 6.68824 6.72697 7.01633 7.32453 7.47477 7.57495 7.65906 8.27776 8.51586 8.93268 9.71556 11.08310 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020947 B = 0.002298 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.403220 B =12183.382840 C =12879.999912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.090 3.910 3 H 0.039 0.961 4 N -0.684 5.684 5 C 0.060 3.940 6 C -0.099 4.099 7 C 0.009 3.991 8 C -0.599 4.599 9 H 0.049 0.951 10 C 0.012 3.988 11 N -0.916 5.916 12 Si 1.072 2.928 13 H -0.288 1.288 14 H -0.289 1.289 15 H -0.284 1.284 16 C -0.091 4.091 17 H 0.075 0.925 18 C -0.116 4.116 19 C 0.023 3.977 20 N -0.499 5.499 21 C 0.079 3.921 22 C -0.119 4.119 23 C -0.110 4.110 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.108 4.108 28 C 0.022 3.978 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.337 0.663 33 H 0.065 0.935 34 H 0.022 0.978 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.006 0.994 38 H 0.004 0.996 39 H 0.268 0.732 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.071 0.929 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.652 -2.862 -27.930 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 H 0.057 0.943 4 N -0.315 5.315 5 C -0.069 4.069 6 C -0.137 4.137 7 C -0.029 4.029 8 C -0.638 4.638 9 H 0.067 0.933 10 C -0.191 4.191 11 N -0.553 5.553 12 Si 0.900 3.100 13 H -0.215 1.215 14 H -0.215 1.215 15 H -0.210 1.210 16 C -0.111 4.111 17 H 0.093 0.907 18 C -0.154 4.154 19 C -0.105 4.105 20 N -0.220 5.220 21 C -0.049 4.049 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.126 4.126 28 C -0.106 4.106 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.024 0.976 38 H 0.022 0.978 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.089 0.911 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.393 -3.159 -26.444 28.240 hybrid contribution -0.356 0.803 -1.472 1.714 sum -9.749 -2.356 -27.916 29.663 Atomic orbital electron populations 1.21889 0.94793 1.02197 1.00839 1.21469 0.95926 0.95495 0.89102 0.94278 1.60575 1.33143 1.33745 1.04024 1.22159 1.00228 0.93688 0.90820 1.21474 0.99460 0.99167 0.93607 1.19192 0.95985 0.94746 0.92935 1.22095 1.47805 0.97848 0.96009 0.93293 1.25871 0.95377 0.96565 1.01288 1.70754 1.41887 1.08900 1.33714 0.83512 0.76350 0.74704 0.75431 1.21496 1.21466 1.21012 1.22038 1.00164 0.95400 0.93469 0.90665 1.22357 0.99820 0.96373 0.96848 1.23276 0.97371 0.95778 0.94046 1.65785 1.37158 1.08614 1.10465 1.21381 0.90436 0.98322 0.94758 1.20545 0.96207 0.94662 1.00649 1.21073 0.93115 0.99603 0.99048 1.21168 0.98938 0.94389 0.99158 1.21188 0.97859 0.94850 0.99687 1.21178 0.93675 1.00031 0.98927 1.21073 0.98778 0.93541 0.99251 1.23490 1.01296 0.94403 0.91446 0.92956 0.91880 0.92871 0.84453 0.91683 0.96007 0.93537 0.92438 0.97564 0.97798 0.92147 0.91449 0.89575 0.90499 0.92970 0.89758 0.89979 0.86218 0.86077 0.86099 0.86029 0.86160 0.91100 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.85 37.16 0.33 -1.38 16 2 C 0.09 1.12 2.37 -67.71 -0.16 0.96 16 3 H 0.04 0.52 7.80 -51.93 -0.41 0.12 16 4 N -0.68 -9.99 6.03 -106.72 -0.64 -10.64 16 5 C 0.06 1.06 5.48 -3.82 -0.02 1.04 16 6 C -0.10 -2.12 5.41 -26.73 -0.14 -2.26 16 7 C 0.01 0.24 4.28 -27.89 -0.12 0.12 16 8 C -0.60 -17.64 9.11 -34.44 -0.31 -17.95 16 9 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 10 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 11 N -0.92 -28.79 13.65 55.43 0.76 -28.03 16 12 Si 1.07 25.95 29.90 -169.99 -5.08 20.87 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.09 -0.97 2.81 -89.23 -0.25 -1.22 16 17 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 18 C -0.12 -1.19 5.92 -25.35 -0.15 -1.34 16 19 C 0.02 0.21 6.33 -2.18 -0.01 0.19 16 20 N -0.50 -4.59 5.65 -231.41 -1.31 -5.90 16 21 C 0.08 0.61 5.76 -4.97 -0.03 0.58 16 22 C -0.12 -0.97 3.84 -104.62 -0.40 -1.37 16 23 C -0.11 -0.88 8.04 -39.58 -0.32 -1.20 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 25 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 27 C -0.11 -0.88 7.50 -39.59 -0.30 -1.18 16 28 C 0.02 0.21 5.35 -2.18 -0.01 0.20 16 29 H 0.05 0.60 6.22 -51.93 -0.32 0.28 16 30 H 0.06 0.78 6.13 -51.93 -0.32 0.46 16 31 H 0.05 0.72 7.45 -51.93 -0.39 0.33 16 32 H 0.34 4.71 8.31 -39.30 -0.33 4.39 16 33 H 0.06 1.19 7.44 -51.93 -0.39 0.80 16 34 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 38 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 39 H 0.27 8.39 7.22 -40.82 -0.29 8.10 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.98 5.87 -51.93 -0.30 0.67 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.47 5.26 -51.93 -0.27 0.20 16 44 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 45 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 46 H 0.12 0.83 7.53 -52.49 -0.40 0.44 16 47 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 48 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 49 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 51 H 0.07 0.70 2.53 -51.93 -0.13 0.57 16 52 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -31.50 393.89 -12.59 -44.09 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -9.06 Total: 2.28 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -3.19 Total: -28.61 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -1.19 Total: -44.57 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.50 -12.59 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272528278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.072 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds