Wall clock time and date at job start Tue Mar 31 2020 11:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47214 * 2 1 4 4 N 1.46901 * 109.47426 * 120.00682 * 2 1 3 5 5 C 1.46904 * 110.99637 * 274.99933 * 4 2 1 6 6 C 1.52997 * 109.47265 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47415 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47057 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00538 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99661 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00186 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00030 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 89.99863 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00044 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00037 * 12 10 8 16 16 C 1.53007 * 109.47153 * 239.99912 * 2 1 3 17 17 H 1.08993 * 110.28887 * 184.32283 * 16 2 1 18 18 C 1.54263 * 110.32527 * 306.46040 * 16 2 1 19 19 C 1.54372 * 105.06433 * 118.89149 * 18 16 2 20 20 N 1.48568 * 104.59384 * 23.85159 * 19 18 16 21 21 C 1.46898 * 111.00060 * 200.95893 * 20 19 18 22 22 C 1.50706 * 109.47169 * 69.87369 * 21 20 19 23 23 C 1.38241 * 119.99842 * 269.73137 * 22 21 20 24 24 C 1.38236 * 119.99479 * 179.78752 * 23 22 21 25 25 C 1.38231 * 120.00085 * 0.43799 * 24 23 22 26 26 C 1.38238 * 120.00314 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99995 * 89.99990 * 22 21 20 28 28 C 1.48556 * 104.22220 * 320.51708 * 20 19 18 29 29 H 1.09004 * 109.47287 * 59.99727 * 1 2 3 30 30 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46963 * 299.99863 * 1 2 3 32 32 H 1.00891 * 111.00828 * 151.04308 * 4 2 1 33 33 H 1.09002 * 109.47117 * 59.99370 * 5 4 2 34 34 H 1.08998 * 109.47117 * 299.99488 * 5 4 2 35 35 H 1.09002 * 109.47302 * 59.99808 * 6 5 4 36 36 H 1.08998 * 109.46899 * 299.99946 * 6 5 4 37 37 H 1.09002 * 109.46997 * 59.99676 * 7 6 5 38 38 H 1.09000 * 109.46625 * 300.00101 * 7 6 5 39 39 H 0.97001 * 119.99697 * 359.97438 * 11 10 8 40 40 H 1.09001 * 110.32019 * 237.79120 * 18 16 2 41 41 H 1.08998 * 110.32038 * 359.89290 * 18 16 2 42 42 H 1.08995 * 110.41119 * 142.62547 * 19 18 16 43 43 H 1.08996 * 110.41581 * 265.07606 * 19 18 16 44 44 H 1.08999 * 109.47186 * 189.87475 * 21 20 19 45 45 H 1.09001 * 109.47013 * 309.87926 * 21 20 19 46 46 H 1.08000 * 120.00047 * 359.97438 * 23 22 21 47 47 H 1.08005 * 119.99544 * 180.27217 * 24 23 22 48 48 H 1.08003 * 119.99845 * 179.83332 * 25 24 23 49 49 H 1.07997 * 120.00232 * 180.02562 * 26 25 24 50 50 H 1.07997 * 120.00112 * 359.97438 * 27 22 21 51 51 H 1.09006 * 110.41385 * 280.70506 * 28 20 19 52 52 H 1.08995 * 110.41488 * 158.26125 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2224 2.3469 6 6 2.5951 -0.5334 3.5744 7 6 2.6611 0.4198 4.7694 8 6 3.1667 -0.3245 5.9783 9 1 3.4156 -1.3727 5.9021 10 6 3.3114 0.3326 7.1817 11 7 3.0089 1.6092 7.2744 12 14 3.9374 -0.5901 8.6804 13 1 5.4186 -0.4980 8.7355 14 1 3.5332 -2.0161 8.5883 15 1 3.3581 0.0102 9.9090 16 6 2.0400 -0.7213 -1.2493 17 1 3.1271 -0.7963 -1.2251 18 6 1.4081 -2.1247 -1.3532 19 6 0.6194 -2.1124 -2.6802 20 7 1.2763 -1.0589 -3.4963 21 6 0.3788 -0.5766 -4.5544 22 6 -0.7465 0.2134 -3.9373 23 6 -1.9150 -0.4241 -3.5640 24 6 -2.9454 0.2999 -2.9939 25 6 -2.8109 1.6626 -2.8054 26 6 -1.6445 2.3010 -3.1834 27 6 -0.6124 1.5763 -3.7496 28 6 1.5798 0.0210 -2.5224 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.9172 -1.1206 1.0287 33 1 1.0871 0.6162 2.5525 34 1 2.7589 1.0460 2.1182 35 1 3.5904 -0.9274 3.3690 36 1 1.9184 -1.3567 3.8029 37 1 1.6660 0.8142 4.9749 38 1 3.3381 1.2429 4.5406 39 1 2.6842 2.0884 6.4961 40 1 2.1852 -2.8886 -1.3817 41 1 0.7361 -2.3004 -0.5132 42 1 0.6950 -3.0799 -3.1764 43 1 -0.4248 -1.8573 -2.4995 44 1 0.9361 0.0606 -5.2411 45 1 -0.0307 -1.4272 -5.0993 46 1 -2.0216 -1.4882 -3.7150 47 1 -3.8566 -0.1989 -2.6982 48 1 -3.6171 2.2287 -2.3624 49 1 -1.5392 3.3656 -3.0357 50 1 0.2989 2.0750 -4.0448 51 1 0.6859 0.6099 -2.3169 52 1 2.3785 0.6597 -2.8996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272528278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:20 Heat of formation + Delta-G solvation = -4.365405 kcal Electronic energy + Delta-G solvation = -26716.103392 eV Core-core repulsion = 23292.546131 eV Total energy + Delta-G solvation = -3423.557262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38969 -39.59801 -37.90300 -36.22360 -34.57080 -33.00517 -31.95201 -31.17326 -30.19246 -29.20255 -27.64987 -26.48002 -24.74076 -23.71134 -23.01948 -22.73011 -22.20444 -21.38341 -20.04099 -18.91506 -17.77568 -17.43724 -16.96342 -16.64399 -16.13502 -15.99827 -15.91563 -15.64849 -15.52893 -15.07988 -15.02803 -14.83409 -14.33827 -13.97748 -13.95950 -13.67112 -13.45288 -13.28808 -13.20156 -12.85354 -12.66116 -12.58992 -12.41178 -12.34833 -12.24000 -12.09641 -12.00761 -11.94496 -11.82791 -11.78309 -11.58531 -11.45447 -11.29729 -10.66320 -10.55928 -9.81281 -9.66725 -9.43678 -9.40449 -8.71217 -6.41363 0.38623 0.46332 1.51373 1.61098 1.79151 2.55629 2.79649 3.02399 3.13996 3.18740 3.69283 3.78042 3.82544 3.91444 3.95083 4.11211 4.11966 4.20632 4.23844 4.26567 4.34337 4.37394 4.46793 4.49886 4.58119 4.59630 4.67427 4.68415 4.72485 4.78413 4.84482 4.86415 4.93886 4.97665 5.01338 5.04345 5.09398 5.11304 5.11550 5.20296 5.29353 5.41439 5.43753 5.51568 5.53106 5.60140 5.61363 5.89162 5.96038 6.03543 6.08112 6.08569 6.17123 6.44596 6.56522 7.40995 8.69770 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020947 B = 0.002298 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.403220 B =12183.382840 C =12879.999912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.094 3.906 3 H 0.033 0.967 4 N -0.681 5.681 5 C 0.075 3.925 6 C -0.085 4.085 7 C 0.010 3.990 8 C -0.619 4.619 9 H 0.051 0.949 10 C -0.042 4.042 11 N -0.939 5.939 12 Si 1.121 2.879 13 H -0.271 1.271 14 H -0.269 1.269 15 H -0.281 1.281 16 C -0.087 4.087 17 H 0.074 0.926 18 C -0.114 4.114 19 C 0.027 3.973 20 N -0.503 5.503 21 C 0.080 3.920 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.131 4.131 27 C -0.116 4.116 28 C 0.026 3.974 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.344 0.656 33 H 0.058 0.942 34 H 0.020 0.980 35 H 0.050 0.950 36 H 0.052 0.948 37 H -0.013 1.013 38 H -0.013 1.013 39 H 0.255 0.745 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.134 0.866 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.127 0.873 51 H 0.069 0.931 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 -4.105 -28.899 30.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.016 4.016 3 H 0.051 0.949 4 N -0.312 5.312 5 C -0.055 4.055 6 C -0.123 4.123 7 C -0.028 4.028 8 C -0.657 4.657 9 H 0.069 0.931 10 C -0.239 4.239 11 N -0.577 5.577 12 Si 0.942 3.058 13 H -0.196 1.196 14 H -0.193 1.193 15 H -0.207 1.207 16 C -0.107 4.107 17 H 0.093 0.907 18 C -0.152 4.152 19 C -0.101 4.101 20 N -0.224 5.224 21 C -0.047 4.047 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.149 4.149 27 C -0.135 4.135 28 C -0.102 4.102 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.005 0.995 38 H 0.005 0.995 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.148 0.852 47 H 0.151 0.849 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.145 0.855 51 H 0.087 0.913 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.236 -4.406 -27.456 29.301 hybrid contribution -0.442 1.211 -1.229 1.782 sum -9.679 -3.195 -28.685 30.442 Atomic orbital electron populations 1.21802 0.94516 1.02054 1.00454 1.21479 0.95986 0.95217 0.88929 0.94876 1.60499 1.33591 1.33096 1.04050 1.21835 0.99470 0.93518 0.90627 1.21243 0.99802 0.97994 0.93219 1.19140 0.94145 0.95042 0.94477 1.22536 1.47665 0.98212 0.97274 0.93113 1.27524 0.94801 0.96585 1.04956 1.70894 1.43555 1.10013 1.33203 0.82891 0.76808 0.74378 0.71716 1.19608 1.19341 1.20693 1.21976 1.00066 0.95681 0.92931 0.90733 1.22313 0.99724 0.95964 0.97179 1.23256 0.97131 0.96275 0.93445 1.65792 1.37780 1.08402 1.10463 1.21423 0.90183 0.98789 0.94332 1.20616 0.96414 0.94721 1.00739 1.21259 0.93131 1.00211 0.98969 1.21407 0.99543 0.94564 0.99126 1.21428 0.98288 0.95201 0.99782 1.21400 0.93801 1.00747 0.98988 1.21236 0.99140 0.93787 0.99349 1.23427 1.01273 0.94473 0.91067 0.92053 0.91864 0.94484 0.83752 0.92377 0.96174 0.93095 0.92954 0.99495 0.99490 0.93593 0.91302 0.90708 0.89537 0.92900 0.89160 0.88975 0.85236 0.84857 0.85008 0.85036 0.85485 0.91276 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.85 71.98 0.64 -2.46 16 2 C 0.09 2.25 2.37 44.92 0.11 2.35 16 3 H 0.03 0.86 7.80 -2.39 -0.02 0.84 16 4 N -0.68 -19.33 6.03 -491.56 -2.97 -22.29 16 5 C 0.07 2.64 5.48 86.30 0.47 3.11 16 6 C -0.08 -3.62 5.41 30.59 0.17 -3.45 16 7 C 0.01 0.52 4.28 29.85 0.13 0.64 16 8 C -0.62 -36.66 9.11 25.60 0.23 -36.42 16 9 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 10 C -0.04 -2.49 5.46 84.65 0.46 -2.03 16 11 N -0.94 -59.86 13.65 21.45 0.29 -59.56 16 12 Si 1.12 51.41 29.90 68.60 2.05 53.46 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 16 C -0.09 -1.73 2.81 -9.89 -0.03 -1.76 16 17 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 18 C -0.11 -2.15 5.92 31.49 0.19 -1.97 16 19 C 0.03 0.43 6.33 86.45 0.55 0.98 16 20 N -0.50 -8.26 5.65 -886.04 -5.01 -13.27 16 21 C 0.08 1.09 5.76 85.56 0.49 1.58 16 22 C -0.12 -1.82 3.84 -19.86 -0.08 -1.90 16 23 C -0.12 -1.71 8.04 22.27 0.18 -1.54 16 24 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 25 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 26 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 27 C -0.12 -1.77 7.50 22.27 0.17 -1.60 16 28 C 0.03 0.46 5.35 86.45 0.46 0.92 16 29 H 0.06 1.34 6.22 -2.39 -0.01 1.33 16 30 H 0.06 1.50 6.13 -2.39 -0.01 1.49 16 31 H 0.04 0.99 7.45 -2.39 -0.02 0.97 16 32 H 0.34 9.16 8.31 -89.70 -0.75 8.42 16 33 H 0.06 2.14 7.44 -2.39 -0.02 2.12 16 34 H 0.02 0.72 8.06 -2.39 -0.02 0.70 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 37 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16 38 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 39 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.60 5.87 -2.39 -0.01 1.59 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 0.86 5.26 -2.39 -0.01 0.85 16 44 H 0.09 1.12 8.09 -2.39 -0.02 1.10 16 45 H 0.09 1.06 8.03 -2.39 -0.02 1.05 16 46 H 0.13 1.57 7.53 -2.91 -0.02 1.54 16 47 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 49 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 50 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 51 H 0.07 1.27 2.53 -2.38 -0.01 1.27 16 52 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -66.96 393.89 -0.58 -67.54 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.24 Total: 22.85 kcal Atomic # 6 Polarization: -53.54 SS G_CDS: 4.81 Total: -48.73 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -7.68 Total: -95.12 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -66.96 -0.58 -67.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272528278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.179 kcal (2) G-P(sol) polarization free energy of solvation -66.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds