Wall clock time and date at job start Tue Mar 31 2020 11:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47214 * 2 1 4 4 N 1.46903 * 109.46640 * 239.99875 * 2 1 3 5 5 C 1.46893 * 111.00119 * 85.00235 * 4 2 1 6 6 C 1.53000 * 109.47186 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47355 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47168 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00563 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.53002 * 109.46895 * 120.00122 * 2 1 3 17 17 H 1.09007 * 110.64159 * 181.69658 * 16 2 1 18 18 C 1.54588 * 110.72711 * 58.54189 * 16 2 1 19 19 C 1.53984 * 105.14276 * 219.68422 * 18 16 2 20 20 N 1.47904 * 107.05777 * 358.77487 * 19 18 16 21 21 C 1.46906 * 110.99989 * 145.84199 * 20 19 18 22 22 C 1.50702 * 109.46787 * 69.87709 * 21 20 19 23 23 C 1.38232 * 120.00025 * 269.72167 * 22 21 20 24 24 C 1.38230 * 120.00209 * 179.78871 * 23 22 21 25 25 C 1.38236 * 119.99821 * 0.46796 * 24 23 22 26 26 C 1.38236 * 119.99901 * 359.76519 * 25 24 23 27 27 C 1.38235 * 119.99849 * 90.00004 * 22 21 20 28 28 C 1.48533 * 105.82035 * 25.33143 * 20 19 18 29 29 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46793 * 300.00186 * 1 2 3 31 31 H 1.08997 * 109.46994 * 59.99673 * 1 2 3 32 32 H 1.00908 * 110.99499 * 208.95331 * 4 2 1 33 33 H 1.09002 * 109.47091 * 59.99841 * 5 4 2 34 34 H 1.08992 * 109.47497 * 299.99732 * 5 4 2 35 35 H 1.09002 * 109.46807 * 60.00192 * 6 5 4 36 36 H 1.08998 * 109.47285 * 299.99794 * 6 5 4 37 37 H 1.09007 * 109.46922 * 59.99890 * 7 6 5 38 38 H 1.09003 * 109.46836 * 300.00646 * 7 6 5 39 39 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 40 40 H 1.09000 * 110.31136 * 338.60686 * 18 16 2 41 41 H 1.09004 * 110.30546 * 100.66732 * 18 16 2 42 42 H 1.09004 * 109.92088 * 118.12670 * 19 18 16 43 43 H 1.09004 * 109.92277 * 239.22655 * 19 18 16 44 44 H 1.08995 * 109.46941 * 189.87255 * 21 20 19 45 45 H 1.08994 * 109.47095 * 309.87443 * 21 20 19 46 46 H 1.08000 * 120.00091 * 0.02562 * 23 22 21 47 47 H 1.08000 * 120.00727 * 180.25768 * 24 23 22 48 48 H 1.08003 * 120.00192 * 179.78975 * 25 24 23 49 49 H 1.08000 * 119.99715 * 179.97438 * 26 25 24 50 50 H 1.07996 * 120.00127 * 359.97438 * 27 22 21 51 51 H 1.08994 * 110.67182 * 202.35533 * 28 20 19 52 52 H 1.09001 * 110.66576 * 79.22528 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1995 5 6 2.0824 0.2225 -2.3469 6 6 2.5961 -0.5331 -3.5742 7 6 2.6609 0.4198 -4.7695 8 6 3.1662 -0.3245 -5.9784 9 1 3.4158 -1.3725 -5.9021 10 6 3.3100 0.3324 -7.1822 11 7 3.0056 1.6085 -7.2753 12 14 3.9371 -0.5901 -8.6805 13 1 3.9999 0.3347 -9.8408 14 1 5.2932 -1.1260 -8.4001 15 1 3.0160 -1.7125 -8.9921 16 6 2.0400 -0.7213 1.2493 17 1 3.1294 -0.7064 1.2838 18 6 1.5110 -2.1730 1.2971 19 6 1.1657 -2.4268 2.7761 20 7 1.5120 -1.1961 3.5198 21 6 0.5770 -0.9716 4.6305 22 6 0.8045 -2.0120 5.6967 23 6 0.1046 -3.2035 5.6603 24 6 0.3164 -4.1596 6.6358 25 6 1.2212 -3.9204 7.6532 26 6 1.9176 -2.7269 7.6923 27 6 1.7090 -1.7725 6.7143 28 6 1.4383 -0.0908 2.5303 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.9173 -1.1206 -1.0287 33 1 2.7589 1.0460 -2.1183 34 1 1.0871 0.6162 -2.5526 35 1 1.9199 -1.3568 -3.8030 36 1 3.5915 -0.9265 -3.3684 37 1 3.3368 1.2439 -4.5410 38 1 1.6652 0.8129 -4.9751 39 1 3.1071 2.0707 -8.1221 40 1 0.6191 -2.2713 0.6781 41 1 2.2814 -2.8676 0.9623 42 1 0.1007 -2.6352 2.8784 43 1 1.7465 -3.2683 3.1540 44 1 0.7428 0.0207 5.0499 45 1 -0.4468 -1.0447 4.2639 46 1 -0.6051 -3.3889 4.8676 47 1 -0.2274 -5.0922 6.6051 48 1 1.3842 -4.6661 8.4173 49 1 2.6242 -2.5399 8.4874 50 1 2.2528 -0.8400 6.7450 51 1 2.0363 0.7595 2.8581 52 1 0.4033 0.2072 2.3628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272528281.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:23 Heat of formation + Delta-G solvation = 13.344108 kcal Electronic energy + Delta-G solvation = -25544.664445 eV Core-core repulsion = 22121.875125 eV Total energy + Delta-G solvation = -3422.789320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.15946 -39.09642 -36.75213 -34.34282 -33.04347 -31.77663 -31.21203 -30.12028 -29.66704 -28.03170 -26.27436 -25.52162 -23.23034 -22.89569 -22.03053 -21.69157 -20.90310 -20.19156 -19.02667 -17.05598 -16.52794 -16.34119 -16.09366 -15.59318 -15.37034 -15.31876 -14.65821 -14.37992 -14.13731 -13.91352 -13.82718 -13.69108 -13.42250 -13.09516 -12.79883 -12.57859 -12.43520 -12.17288 -11.82494 -11.71809 -11.63291 -11.56021 -11.36626 -11.25119 -11.14391 -10.97940 -10.85361 -10.58485 -10.52341 -10.45407 -10.42238 -9.65667 -9.29918 -9.21956 -9.11458 -9.02994 -8.62988 -8.31694 -8.13538 -5.97064 -3.99075 1.02101 1.10510 3.35466 3.37794 3.39412 3.42312 3.89352 4.17716 4.36362 4.48783 4.51207 4.60192 4.68896 4.71768 4.80045 4.84329 4.95749 5.06030 5.16383 5.18559 5.20092 5.31324 5.33685 5.38568 5.42520 5.47461 5.51693 5.68480 5.72673 5.74880 5.79809 5.83069 5.89587 5.95311 5.99738 6.06919 6.12563 6.15224 6.20470 6.30190 6.34321 6.43941 6.63583 6.68855 6.75265 6.75456 6.82691 7.17085 7.40052 7.67681 7.71433 7.86812 8.03455 8.46898 9.07933 9.64653 11.14302 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.036606 B = 0.001709 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.718146 B =16375.324494 C =16678.652812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.043 0.957 4 N -0.684 5.684 5 C 0.060 3.940 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.288 1.288 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.090 4.090 17 H 0.080 0.920 18 C -0.122 4.122 19 C 0.038 3.962 20 N -0.511 5.511 21 C 0.084 3.916 22 C -0.074 4.074 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.100 4.100 28 C 0.036 3.964 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.337 0.663 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.080 0.920 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 -7.116 31.365 32.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 H 0.061 0.939 4 N -0.315 5.315 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.016 4.016 8 C -0.558 4.558 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.213 1.213 14 H -0.203 1.203 15 H -0.202 1.202 16 C -0.109 4.109 17 H 0.098 0.902 18 C -0.160 4.160 19 C -0.090 4.090 20 N -0.235 5.235 21 C -0.044 4.044 22 C -0.075 4.075 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.091 4.091 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.098 0.902 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.234 -7.237 31.294 32.720 hybrid contribution 0.350 0.151 -0.966 1.039 sum -5.883 -7.086 30.328 31.696 Atomic orbital electron populations 1.21954 0.95030 1.02221 1.00995 1.21414 0.95831 0.95705 0.89077 0.93948 1.60604 1.33167 1.33802 1.03972 1.22160 1.00355 0.93668 0.90686 1.21615 0.99236 0.99431 0.94166 1.19062 0.97057 0.94232 0.91204 1.21229 1.43574 0.96370 0.94592 0.92733 1.25033 0.95656 0.94894 0.98944 1.69960 1.48883 1.08993 1.25769 0.86653 0.79423 0.79603 0.82284 1.21320 1.20281 1.20244 1.22211 1.00300 0.95201 0.93236 0.90172 1.22463 1.02351 0.96215 0.94955 1.22911 0.98938 0.93503 0.93663 1.64778 1.47889 1.02806 1.08008 1.21205 0.94441 0.97586 0.91169 1.19724 0.96718 0.95290 0.95721 1.21071 0.99837 0.93530 0.98713 1.21121 0.98675 0.99163 0.94974 1.21154 0.96969 0.97352 0.98656 1.21159 0.99787 0.94108 0.98959 1.21025 0.97249 0.99510 0.94051 1.23395 1.00266 0.94362 0.91115 0.91841 0.92918 0.92485 0.84466 0.95882 0.91579 0.92624 0.93713 0.96851 0.96636 0.93017 0.90016 0.91057 0.94011 0.90693 0.89946 0.93692 0.86425 0.86191 0.86275 0.86158 0.86044 0.90171 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.80 37.16 0.33 -1.29 16 2 C 0.09 1.06 2.55 -67.71 -0.17 0.89 16 3 H 0.04 0.53 7.80 -51.93 -0.41 0.12 16 4 N -0.68 -9.70 5.99 -106.73 -0.64 -10.34 16 5 C 0.06 1.04 5.48 -3.83 -0.02 1.01 16 6 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 7 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 8 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 12 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C -0.09 -0.91 2.82 -88.76 -0.25 -1.16 16 17 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 18 C -0.12 -1.20 6.01 -25.38 -0.15 -1.36 16 19 C 0.04 0.35 5.63 -2.76 -0.02 0.33 16 20 N -0.51 -4.72 5.26 -231.89 -1.22 -5.94 16 21 C 0.08 0.67 4.92 -4.97 -0.02 0.65 16 22 C -0.07 -0.62 5.10 -104.62 -0.53 -1.16 16 23 C -0.11 -0.91 8.95 -39.59 -0.35 -1.26 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 25 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 26 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16 27 C -0.10 -0.81 9.70 -39.58 -0.38 -1.20 16 28 C 0.04 0.33 5.86 -1.90 -0.01 0.32 16 29 H 0.06 0.72 6.08 -51.93 -0.32 0.40 16 30 H 0.05 0.50 6.02 -51.93 -0.31 0.19 16 31 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 32 H 0.34 4.58 8.36 -39.29 -0.33 4.25 16 33 H 0.02 0.40 8.06 -51.93 -0.42 -0.01 16 34 H 0.07 1.18 7.44 -51.93 -0.39 0.79 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.08 0.86 5.75 -51.93 -0.30 0.57 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.36 6.94 -51.93 -0.36 0.00 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 45 H 0.04 0.35 7.76 -51.93 -0.40 -0.06 16 46 H 0.12 0.83 7.49 -52.49 -0.39 0.44 16 47 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 49 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 50 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 51 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.06 0.48 5.53 -51.93 -0.29 0.20 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -30.60 402.47 -12.89 -43.49 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -9.33 Total: 0.16 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -3.48 Total: -23.82 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -1.12 Total: -42.83 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.60 -12.89 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272528281.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.836 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds