Wall clock time and date at job start Tue Mar 31 2020 11:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47214 * 2 1 4 4 N 1.46903 * 109.46640 * 239.99875 * 2 1 3 5 5 C 1.46893 * 111.00119 * 85.00235 * 4 2 1 6 6 C 1.53000 * 109.47186 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47355 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47168 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00563 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.53002 * 109.46895 * 120.00122 * 2 1 3 17 17 H 1.09007 * 110.64159 * 181.69658 * 16 2 1 18 18 C 1.54588 * 110.72711 * 58.54189 * 16 2 1 19 19 C 1.53984 * 105.14276 * 219.68422 * 18 16 2 20 20 N 1.47904 * 107.05777 * 358.77487 * 19 18 16 21 21 C 1.46906 * 110.99989 * 145.84199 * 20 19 18 22 22 C 1.50702 * 109.46787 * 69.87709 * 21 20 19 23 23 C 1.38232 * 120.00025 * 269.72167 * 22 21 20 24 24 C 1.38230 * 120.00209 * 179.78871 * 23 22 21 25 25 C 1.38236 * 119.99821 * 0.46796 * 24 23 22 26 26 C 1.38236 * 119.99901 * 359.76519 * 25 24 23 27 27 C 1.38235 * 119.99849 * 90.00004 * 22 21 20 28 28 C 1.48533 * 105.82035 * 25.33143 * 20 19 18 29 29 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46793 * 300.00186 * 1 2 3 31 31 H 1.08997 * 109.46994 * 59.99673 * 1 2 3 32 32 H 1.00908 * 110.99499 * 208.95331 * 4 2 1 33 33 H 1.09002 * 109.47091 * 59.99841 * 5 4 2 34 34 H 1.08992 * 109.47497 * 299.99732 * 5 4 2 35 35 H 1.09002 * 109.46807 * 60.00192 * 6 5 4 36 36 H 1.08998 * 109.47285 * 299.99794 * 6 5 4 37 37 H 1.09007 * 109.46922 * 59.99890 * 7 6 5 38 38 H 1.09003 * 109.46836 * 300.00646 * 7 6 5 39 39 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 40 40 H 1.09000 * 110.31136 * 338.60686 * 18 16 2 41 41 H 1.09004 * 110.30546 * 100.66732 * 18 16 2 42 42 H 1.09004 * 109.92088 * 118.12670 * 19 18 16 43 43 H 1.09004 * 109.92277 * 239.22655 * 19 18 16 44 44 H 1.08995 * 109.46941 * 189.87255 * 21 20 19 45 45 H 1.08994 * 109.47095 * 309.87443 * 21 20 19 46 46 H 1.08000 * 120.00091 * 0.02562 * 23 22 21 47 47 H 1.08000 * 120.00727 * 180.25768 * 24 23 22 48 48 H 1.08003 * 120.00192 * 179.78975 * 25 24 23 49 49 H 1.08000 * 119.99715 * 179.97438 * 26 25 24 50 50 H 1.07996 * 120.00127 * 359.97438 * 27 22 21 51 51 H 1.08994 * 110.67182 * 202.35533 * 28 20 19 52 52 H 1.09001 * 110.66576 * 79.22528 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1995 5 6 2.0824 0.2225 -2.3469 6 6 2.5961 -0.5331 -3.5742 7 6 2.6609 0.4198 -4.7695 8 6 3.1662 -0.3245 -5.9784 9 1 3.4158 -1.3725 -5.9021 10 6 3.3100 0.3324 -7.1822 11 7 3.0056 1.6085 -7.2753 12 14 3.9371 -0.5901 -8.6805 13 1 3.9999 0.3347 -9.8408 14 1 5.2932 -1.1260 -8.4001 15 1 3.0160 -1.7125 -8.9921 16 6 2.0400 -0.7213 1.2493 17 1 3.1294 -0.7064 1.2838 18 6 1.5110 -2.1730 1.2971 19 6 1.1657 -2.4268 2.7761 20 7 1.5120 -1.1961 3.5198 21 6 0.5770 -0.9716 4.6305 22 6 0.8045 -2.0120 5.6967 23 6 0.1046 -3.2035 5.6603 24 6 0.3164 -4.1596 6.6358 25 6 1.2212 -3.9204 7.6532 26 6 1.9176 -2.7269 7.6923 27 6 1.7090 -1.7725 6.7143 28 6 1.4383 -0.0908 2.5303 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.9173 -1.1206 -1.0287 33 1 2.7589 1.0460 -2.1183 34 1 1.0871 0.6162 -2.5526 35 1 1.9199 -1.3568 -3.8030 36 1 3.5915 -0.9265 -3.3684 37 1 3.3368 1.2439 -4.5410 38 1 1.6652 0.8129 -4.9751 39 1 3.1071 2.0707 -8.1221 40 1 0.6191 -2.2713 0.6781 41 1 2.2814 -2.8676 0.9623 42 1 0.1007 -2.6352 2.8784 43 1 1.7465 -3.2683 3.1540 44 1 0.7428 0.0207 5.0499 45 1 -0.4468 -1.0447 4.2639 46 1 -0.6051 -3.3889 4.8676 47 1 -0.2274 -5.0922 6.6051 48 1 1.3842 -4.6661 8.4173 49 1 2.6242 -2.5399 8.4874 50 1 2.2528 -0.8400 6.7450 51 1 2.0363 0.7595 2.8581 52 1 0.4033 0.2072 2.3628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272528281.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:23 Heat of formation + Delta-G solvation = -3.694095 kcal Electronic energy + Delta-G solvation = -25545.403277 eV Core-core repulsion = 22121.875125 eV Total energy + Delta-G solvation = -3423.528151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86178 -39.77553 -37.85945 -35.91956 -34.46804 -33.09261 -31.76004 -31.24752 -30.62715 -28.88417 -27.90287 -26.39264 -24.69111 -23.52786 -23.07402 -22.51789 -21.94666 -21.53025 -19.96690 -18.48125 -17.62820 -17.25141 -17.09722 -16.56250 -16.42444 -16.16614 -15.97964 -15.70758 -15.19997 -14.90835 -14.75027 -14.32932 -14.26436 -14.23860 -13.87381 -13.72353 -13.42995 -13.36595 -13.15251 -13.07186 -12.70182 -12.61061 -12.46714 -12.39456 -12.32692 -12.06243 -11.98436 -11.75465 -11.73788 -11.67763 -11.41454 -11.33719 -11.27578 -11.02164 -10.54803 -9.77717 -9.69219 -9.33879 -9.30143 -8.19935 -6.31118 0.45892 0.54775 1.39919 1.43264 1.51204 2.41125 2.77709 3.12889 3.13845 3.23979 3.66684 3.84004 3.86669 3.98528 4.00586 4.18386 4.20563 4.27514 4.31318 4.34146 4.36418 4.40488 4.47160 4.55102 4.62605 4.68029 4.70230 4.72177 4.74449 4.80575 4.92615 4.98204 5.01896 5.06321 5.10226 5.11699 5.15925 5.19742 5.22312 5.26957 5.33277 5.52417 5.52863 5.60449 5.66358 5.72303 5.75474 5.85925 5.93878 6.05536 6.13138 6.17160 6.28210 6.52880 6.85567 7.37984 8.91664 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.036606 B = 0.001709 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.718146 B =16375.324494 C =16678.652812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.092 3.908 3 H 0.039 0.961 4 N -0.682 5.682 5 C 0.075 3.925 6 C -0.091 4.091 7 C 0.025 3.975 8 C -0.545 4.545 9 H 0.059 0.941 10 C -0.002 4.002 11 N -0.933 5.933 12 Si 0.966 3.034 13 H -0.282 1.282 14 H -0.267 1.267 15 H -0.267 1.267 16 C -0.084 4.084 17 H 0.076 0.924 18 C -0.118 4.118 19 C 0.044 3.956 20 N -0.519 5.519 21 C 0.086 3.914 22 C -0.086 4.086 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.114 4.114 28 C 0.041 3.959 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.343 0.657 33 H 0.020 0.980 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.049 0.951 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.123 0.877 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.127 0.873 51 H 0.085 0.915 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 -8.319 32.401 33.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.018 4.018 3 H 0.057 0.943 4 N -0.314 5.314 5 C -0.055 4.055 6 C -0.129 4.129 7 C -0.013 4.013 8 C -0.583 4.583 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.573 5.573 12 Si 0.790 3.210 13 H -0.207 1.207 14 H -0.192 1.192 15 H -0.192 1.192 16 C -0.103 4.103 17 H 0.094 0.906 18 C -0.156 4.156 19 C -0.084 4.084 20 N -0.243 5.243 21 C -0.041 4.041 22 C -0.087 4.087 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.149 4.149 26 C -0.148 4.148 27 C -0.132 4.132 28 C -0.086 4.086 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.161 0.839 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.008 0.992 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.141 0.859 47 H 0.154 0.846 48 H 0.156 0.844 49 H 0.154 0.846 50 H 0.145 0.855 51 H 0.103 0.897 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.124 -8.452 32.354 33.996 hybrid contribution 0.304 0.532 -1.225 1.370 sum -5.820 -7.920 31.129 32.644 Atomic orbital electron populations 1.21933 0.94411 1.02285 1.01224 1.21451 0.96220 0.95471 0.88650 0.94310 1.60537 1.33548 1.33190 1.04118 1.21837 0.99586 0.93481 0.90560 1.21364 0.99679 0.98239 0.93666 1.18973 0.94772 0.94460 0.93075 1.21682 1.43907 0.96883 0.95835 0.92245 1.26004 0.95664 0.95801 1.02448 1.70095 1.49753 1.10692 1.26783 0.85487 0.79197 0.78341 0.77939 1.20740 1.19152 1.19207 1.22108 1.00024 0.95282 0.92896 0.90589 1.22412 1.01899 0.95911 0.95420 1.22819 0.99173 0.93400 0.92981 1.64763 1.48599 1.02718 1.08248 1.21211 0.94312 0.97926 0.90693 1.19836 0.97168 0.95630 0.96043 1.21234 1.00117 0.93690 0.99209 1.21397 0.98844 0.99716 0.94857 1.21457 0.96642 0.97742 0.99026 1.21433 1.00080 0.94086 0.99240 1.21215 0.97519 1.00094 0.94385 1.23357 1.00552 0.94366 0.90371 0.91848 0.90899 0.94067 0.83894 0.96188 0.92229 0.92957 0.93188 0.99158 0.99116 0.92787 0.90553 0.91483 0.93376 0.91369 0.89269 0.93312 0.85876 0.84650 0.84434 0.84552 0.85505 0.89680 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.80 71.98 0.63 -2.35 16 2 C 0.09 2.06 2.55 44.92 0.11 2.18 16 3 H 0.04 0.93 7.80 -2.39 -0.02 0.91 16 4 N -0.68 -18.83 5.99 -491.57 -2.95 -21.78 16 5 C 0.07 2.58 5.48 86.30 0.47 3.06 16 6 C -0.09 -3.86 5.41 30.59 0.17 -3.69 16 7 C 0.02 1.34 4.97 29.85 0.15 1.49 16 8 C -0.55 -31.79 9.11 25.60 0.23 -31.55 16 9 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 10 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 11 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 12 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 C -0.08 -1.57 2.82 -9.59 -0.03 -1.60 16 17 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 18 C -0.12 -2.20 6.01 31.47 0.19 -2.01 16 19 C 0.04 0.75 5.63 86.44 0.49 1.24 16 20 N -0.52 -8.82 5.26 -887.57 -4.66 -13.49 16 21 C 0.09 1.26 4.92 85.56 0.42 1.68 16 22 C -0.09 -1.36 5.10 -19.87 -0.10 -1.46 16 23 C -0.12 -1.86 8.95 22.27 0.20 -1.66 16 24 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 25 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 26 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 27 C -0.11 -1.73 9.70 22.27 0.22 -1.52 16 28 C 0.04 0.67 5.86 86.65 0.51 1.18 16 29 H 0.06 1.35 6.08 -2.39 -0.01 1.34 16 30 H 0.07 1.24 6.02 -2.39 -0.01 1.23 16 31 H 0.04 1.00 7.45 -2.39 -0.02 0.98 16 32 H 0.34 8.95 8.36 -89.69 -0.75 8.20 16 33 H 0.02 0.70 8.06 -2.39 -0.02 0.68 16 34 H 0.06 2.15 7.44 -2.39 -0.02 2.13 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 37 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.08 1.52 5.75 -2.39 -0.01 1.50 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 0.76 6.94 -2.38 -0.02 0.74 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.16 8.06 -2.39 -0.02 1.14 16 45 H 0.05 0.67 7.76 -2.39 -0.02 0.66 16 46 H 0.12 1.60 7.49 -2.91 -0.02 1.58 16 47 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 48 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 49 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 50 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 51 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.06 0.93 5.53 -2.39 -0.01 0.92 16 Total: -1.00 -65.37 402.47 -0.38 -65.76 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.12 Total: 19.12 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 4.79 Total: -39.18 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -7.33 Total: -92.61 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.37 -0.38 -65.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272528281.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.063 kcal (2) G-P(sol) polarization free energy of solvation -65.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds