Wall clock time and date at job start Tue Mar 31 2020 11:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46993 * 2 1 4 4 N 1.46903 * 109.47509 * 119.99539 * 2 1 3 5 5 C 1.46893 * 111.00119 * 275.00312 * 4 2 1 6 6 C 1.53000 * 109.47186 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47355 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47168 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00563 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.53002 * 109.47456 * 239.99863 * 2 1 3 17 17 H 1.09000 * 110.27044 * 299.29959 * 16 2 1 18 18 C 1.54587 * 110.31156 * 177.20905 * 16 2 1 19 19 C 1.55106 * 102.84782 * 219.18434 * 18 16 2 20 20 N 1.48540 * 103.27822 * 37.30537 * 19 18 16 21 21 C 1.46900 * 110.99413 * 200.33276 * 20 19 18 22 22 C 1.50702 * 109.47622 * 307.39598 * 21 20 19 23 23 C 1.38237 * 120.00102 * 269.73414 * 22 21 20 24 24 C 1.38237 * 120.00007 * 179.78493 * 23 22 21 25 25 C 1.38234 * 119.99489 * 0.46172 * 24 23 22 26 26 C 1.38234 * 120.00510 * 359.76604 * 25 24 23 27 27 C 1.38233 * 119.99821 * 0.02562 * 26 25 24 28 28 C 1.47897 * 105.82088 * 320.84396 * 20 19 18 29 29 H 1.09002 * 109.46845 * 60.00323 * 1 2 3 30 30 H 1.09007 * 109.46680 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47224 * 300.00104 * 1 2 3 32 32 H 1.00908 * 110.99499 * 38.95408 * 4 2 1 33 33 H 1.09002 * 109.47091 * 59.99841 * 5 4 2 34 34 H 1.08992 * 109.47497 * 299.99732 * 5 4 2 35 35 H 1.09002 * 109.46807 * 60.00192 * 6 5 4 36 36 H 1.08998 * 109.47285 * 299.99794 * 6 5 4 37 37 H 1.09007 * 109.46922 * 59.99890 * 7 6 5 38 38 H 1.09003 * 109.46836 * 300.00646 * 7 6 5 39 39 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 40 40 H 1.09004 * 110.72889 * 337.48598 * 18 16 2 41 41 H 1.09004 * 110.72751 * 100.76577 * 18 16 2 42 42 H 1.08999 * 110.59392 * 278.87848 * 19 18 16 43 43 H 1.08996 * 110.83116 * 155.84602 * 19 18 16 44 44 H 1.09002 * 109.47379 * 67.39860 * 21 20 19 45 45 H 1.09000 * 109.47058 * 187.39774 * 21 20 19 46 46 H 1.07999 * 120.00075 * 359.97438 * 23 22 21 47 47 H 1.07991 * 120.00248 * 180.24718 * 24 23 22 48 48 H 1.08005 * 119.99936 * 179.79438 * 25 24 23 49 49 H 1.08002 * 120.00187 * 180.02562 * 26 25 24 50 50 H 1.08007 * 120.00085 * 179.97438 * 27 26 25 51 51 H 1.08997 * 109.92280 * 265.97983 * 28 20 19 52 52 H 1.09007 * 110.07738 * 144.77898 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 1.1995 5 6 2.0825 0.2227 2.3468 6 6 2.5952 -0.5330 3.5745 7 6 2.6612 0.4203 4.7694 8 6 3.1667 -0.3239 5.9783 9 1 3.4165 -1.3718 5.9020 10 6 3.3105 0.3332 7.1820 11 7 3.0069 1.6095 7.2748 12 14 3.9365 -0.5895 8.6807 13 1 4.0007 0.3358 9.8405 14 1 3.0146 -1.7112 8.9922 15 1 5.2925 -1.1263 8.4008 16 6 2.0401 -0.7213 -1.2492 17 1 1.6942 -1.7549 -1.2561 18 6 3.5842 -0.6717 -1.3046 19 6 3.8682 -0.4451 -2.8125 20 7 2.7772 0.4721 -3.2310 21 6 2.5818 0.4278 -4.6863 22 6 3.8994 0.6664 -5.3777 23 6 4.2845 1.9527 -5.7064 24 6 5.4952 2.1719 -6.3367 25 6 6.3163 1.1039 -6.6467 26 6 5.9290 -0.1828 -6.3223 27 6 4.7203 -0.4016 -5.6881 28 6 1.5662 0.0094 -2.5192 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.4496 -1.4979 1.4101 33 1 1.0871 0.6164 2.5525 34 1 2.7588 1.0463 2.1182 35 1 3.5906 -0.9269 3.3690 36 1 1.9185 -1.3563 3.8031 37 1 1.6660 0.8147 4.9749 38 1 3.3381 1.2435 4.5405 39 1 3.1077 2.0716 8.1217 40 1 3.9650 0.1597 -0.7114 41 1 4.0128 -1.6155 -0.9674 42 1 3.8104 -1.3863 -3.3592 43 1 4.8415 0.0235 -2.9574 44 1 2.1937 -0.5501 -4.9712 45 1 1.8717 1.2005 -4.9811 46 1 3.6410 2.7866 -5.4681 47 1 5.7979 3.1771 -6.5899 48 1 7.2606 1.2748 -7.1422 49 1 6.5707 -1.0171 -6.5641 50 1 4.4175 -1.4069 -5.4350 51 1 1.0018 -0.6750 -3.1526 52 1 0.9436 0.8617 -2.2469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272528283.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:25 Heat of formation + Delta-G solvation = 9.125364 kcal Electronic energy + Delta-G solvation = -25676.791793 eV Core-core repulsion = 22253.819535 eV Total energy + Delta-G solvation = -3422.972258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12399 -38.93550 -36.80639 -34.26801 -33.05583 -31.79968 -31.18912 -30.19740 -29.70571 -27.67007 -26.14643 -25.51760 -22.94429 -22.91427 -21.88417 -21.70535 -20.71203 -20.42620 -19.50188 -17.08924 -16.33722 -16.21933 -16.07649 -15.47704 -15.24675 -15.09538 -14.56686 -14.36977 -14.16184 -13.88237 -13.68334 -13.43344 -13.40708 -13.10159 -12.84133 -12.46034 -12.31574 -12.26935 -12.07160 -11.81727 -11.57285 -11.42624 -11.27675 -11.16875 -11.09628 -10.96837 -10.82672 -10.69207 -10.56207 -10.52988 -10.34155 -9.65072 -9.28081 -9.18485 -9.10457 -9.01646 -8.55945 -8.30551 -8.06477 -5.95902 -3.97868 1.04086 1.13216 3.36079 3.40041 3.42398 3.42887 3.98058 4.21726 4.43919 4.50654 4.54176 4.59630 4.72401 4.74776 4.83658 4.96391 5.01081 5.17353 5.19799 5.23260 5.28021 5.32833 5.39393 5.39627 5.40194 5.51001 5.63318 5.66257 5.71580 5.76299 5.77667 5.86215 5.94169 5.96327 6.06978 6.14132 6.18727 6.21184 6.23572 6.31749 6.36224 6.40047 6.69567 6.74881 6.78288 6.81770 6.85149 7.18802 7.42819 7.70558 7.73235 7.88626 8.04835 8.48179 9.09203 9.65727 11.15488 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.001941 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.005038 B =14420.028403 C =15129.814370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.092 3.908 3 H 0.080 0.920 4 N -0.684 5.684 5 C 0.061 3.939 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.288 1.288 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.083 4.083 17 H 0.071 0.929 18 C -0.102 4.102 19 C 0.033 3.967 20 N -0.509 5.509 21 C 0.084 3.916 22 C -0.080 4.080 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.113 4.113 28 C 0.039 3.961 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.336 0.664 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.042 0.958 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 -2.719 -30.760 30.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.018 4.018 3 H 0.098 0.902 4 N -0.314 5.314 5 C -0.068 4.068 6 C -0.144 4.144 7 C -0.015 4.015 8 C -0.557 4.557 9 H 0.072 0.928 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.213 1.213 14 H -0.203 1.203 15 H -0.202 1.202 16 C -0.103 4.103 17 H 0.090 0.910 18 C -0.140 4.140 19 C -0.094 4.094 20 N -0.233 5.233 21 C -0.043 4.043 22 C -0.080 4.080 23 C -0.118 4.118 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.132 4.132 28 C -0.089 4.089 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.060 0.940 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.373 -1.940 -30.658 30.721 hybrid contribution -0.859 -1.151 0.856 1.672 sum -0.486 -3.090 -29.801 29.965 Atomic orbital electron populations 1.22573 0.97768 1.01871 1.02163 1.21587 0.91955 0.98072 0.90226 0.90226 1.60610 1.56708 1.10001 1.04067 1.22124 0.98969 0.95411 0.90259 1.21615 1.00010 0.98873 0.93952 1.19059 0.96959 0.94350 0.91172 1.21227 1.43536 0.96361 0.94575 0.92757 1.25039 0.95682 0.94899 0.98964 1.69961 1.48918 1.08969 1.25756 0.86655 0.79455 0.79569 0.82294 1.21332 1.20305 1.20230 1.21945 0.96307 0.98916 0.93135 0.91046 1.22388 0.94623 1.02799 0.94170 1.23355 0.95694 0.94196 0.96157 1.64906 1.05091 1.49115 1.04211 1.21247 0.94134 1.00788 0.88173 1.19752 0.96281 0.93536 0.98446 1.21049 0.96594 0.96393 0.97731 1.21170 0.94640 0.99012 0.99120 1.21162 0.99665 0.92888 1.00296 1.21117 0.96572 0.97093 0.99162 1.21080 0.94650 0.98507 0.98940 1.23013 0.92465 0.98830 0.94614 0.92229 0.92692 0.92439 0.84669 0.95876 0.91591 0.92629 0.93794 0.96880 0.96608 0.93013 0.90342 0.90900 0.94185 0.90260 0.93944 0.89900 0.85908 0.86091 0.86236 0.86170 0.86442 0.94001 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 8.92 37.16 0.33 -1.63 16 2 C 0.09 1.10 1.88 -67.71 -0.13 0.97 16 3 H 0.08 1.06 7.79 -51.93 -0.40 0.66 16 4 N -0.68 -9.71 5.95 -106.73 -0.64 -10.34 16 5 C 0.06 1.06 5.48 -3.83 -0.02 1.04 16 6 C -0.11 -2.23 5.41 -26.73 -0.14 -2.38 16 7 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 8 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 C -0.08 -0.87 2.77 -89.27 -0.25 -1.12 16 17 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 18 C -0.10 -1.14 6.34 -24.78 -0.16 -1.30 16 19 C 0.03 0.34 4.98 -1.80 -0.01 0.33 16 20 N -0.51 -5.08 5.39 -231.78 -1.25 -6.33 16 21 C 0.08 0.71 5.19 -4.98 -0.03 0.69 16 22 C -0.08 -0.70 4.59 -104.62 -0.48 -1.18 16 23 C -0.10 -0.85 9.70 -39.58 -0.38 -1.24 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.11 -0.94 8.34 -39.58 -0.33 -1.27 16 28 C 0.04 0.37 5.87 -2.76 -0.02 0.35 16 29 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 30 H 0.05 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 32 H 0.34 4.54 8.47 -39.29 -0.33 4.21 16 33 H 0.02 0.40 7.44 -51.93 -0.39 0.02 16 34 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.37 7.09 -51.93 -0.37 0.01 16 43 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 44 H 0.04 0.34 7.76 -51.93 -0.40 -0.07 16 45 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 46 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 48 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 49 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 50 H 0.12 0.86 7.38 -52.48 -0.39 0.47 16 51 H 0.04 0.36 7.57 -51.93 -0.39 -0.04 16 52 H 0.08 0.78 6.37 -51.93 -0.33 0.45 16 LS Contribution 405.49 15.07 6.11 6.11 Total: -1.00 -30.58 405.49 -12.98 -43.57 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -9.57 Total: 0.79 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -3.35 Total: -24.12 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -1.15 Total: -43.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.58 -12.98 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272528283.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.691 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds