Wall clock time and date at job start Tue Mar 31 2020 11:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46993 * 2 1 4 4 N 1.46903 * 109.47509 * 119.99539 * 2 1 3 5 5 C 1.46893 * 111.00119 * 275.00312 * 4 2 1 6 6 C 1.53000 * 109.47186 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47355 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47168 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00563 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.53002 * 109.47456 * 239.99863 * 2 1 3 17 17 H 1.09000 * 110.27044 * 299.29959 * 16 2 1 18 18 C 1.54587 * 110.31156 * 177.20905 * 16 2 1 19 19 C 1.55106 * 102.84782 * 219.18434 * 18 16 2 20 20 N 1.48540 * 103.27822 * 37.30537 * 19 18 16 21 21 C 1.46900 * 110.99413 * 200.33276 * 20 19 18 22 22 C 1.50702 * 109.47622 * 307.39598 * 21 20 19 23 23 C 1.38237 * 120.00102 * 269.73414 * 22 21 20 24 24 C 1.38237 * 120.00007 * 179.78493 * 23 22 21 25 25 C 1.38234 * 119.99489 * 0.46172 * 24 23 22 26 26 C 1.38234 * 120.00510 * 359.76604 * 25 24 23 27 27 C 1.38233 * 119.99821 * 0.02562 * 26 25 24 28 28 C 1.47897 * 105.82088 * 320.84396 * 20 19 18 29 29 H 1.09002 * 109.46845 * 60.00323 * 1 2 3 30 30 H 1.09007 * 109.46680 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47224 * 300.00104 * 1 2 3 32 32 H 1.00908 * 110.99499 * 38.95408 * 4 2 1 33 33 H 1.09002 * 109.47091 * 59.99841 * 5 4 2 34 34 H 1.08992 * 109.47497 * 299.99732 * 5 4 2 35 35 H 1.09002 * 109.46807 * 60.00192 * 6 5 4 36 36 H 1.08998 * 109.47285 * 299.99794 * 6 5 4 37 37 H 1.09007 * 109.46922 * 59.99890 * 7 6 5 38 38 H 1.09003 * 109.46836 * 300.00646 * 7 6 5 39 39 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 40 40 H 1.09004 * 110.72889 * 337.48598 * 18 16 2 41 41 H 1.09004 * 110.72751 * 100.76577 * 18 16 2 42 42 H 1.08999 * 110.59392 * 278.87848 * 19 18 16 43 43 H 1.08996 * 110.83116 * 155.84602 * 19 18 16 44 44 H 1.09002 * 109.47379 * 67.39860 * 21 20 19 45 45 H 1.09000 * 109.47058 * 187.39774 * 21 20 19 46 46 H 1.07999 * 120.00075 * 359.97438 * 23 22 21 47 47 H 1.07991 * 120.00248 * 180.24718 * 24 23 22 48 48 H 1.08005 * 119.99936 * 179.79438 * 25 24 23 49 49 H 1.08002 * 120.00187 * 180.02562 * 26 25 24 50 50 H 1.08007 * 120.00085 * 179.97438 * 27 26 25 51 51 H 1.08997 * 109.92280 * 265.97983 * 28 20 19 52 52 H 1.09007 * 110.07738 * 144.77898 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 1.1995 5 6 2.0825 0.2227 2.3468 6 6 2.5952 -0.5330 3.5745 7 6 2.6612 0.4203 4.7694 8 6 3.1667 -0.3239 5.9783 9 1 3.4165 -1.3718 5.9020 10 6 3.3105 0.3332 7.1820 11 7 3.0069 1.6095 7.2748 12 14 3.9365 -0.5895 8.6807 13 1 4.0007 0.3358 9.8405 14 1 3.0146 -1.7112 8.9922 15 1 5.2925 -1.1263 8.4008 16 6 2.0401 -0.7213 -1.2492 17 1 1.6942 -1.7549 -1.2561 18 6 3.5842 -0.6717 -1.3046 19 6 3.8682 -0.4451 -2.8125 20 7 2.7772 0.4721 -3.2310 21 6 2.5818 0.4278 -4.6863 22 6 3.8994 0.6664 -5.3777 23 6 4.2845 1.9527 -5.7064 24 6 5.4952 2.1719 -6.3367 25 6 6.3163 1.1039 -6.6467 26 6 5.9290 -0.1828 -6.3223 27 6 4.7203 -0.4016 -5.6881 28 6 1.5662 0.0094 -2.5192 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.4496 -1.4979 1.4101 33 1 1.0871 0.6164 2.5525 34 1 2.7588 1.0463 2.1182 35 1 3.5906 -0.9269 3.3690 36 1 1.9185 -1.3563 3.8031 37 1 1.6660 0.8147 4.9749 38 1 3.3381 1.2435 4.5405 39 1 3.1077 2.0716 8.1217 40 1 3.9650 0.1597 -0.7114 41 1 4.0128 -1.6155 -0.9674 42 1 3.8104 -1.3863 -3.3592 43 1 4.8415 0.0235 -2.9574 44 1 2.1937 -0.5501 -4.9712 45 1 1.8717 1.2005 -4.9811 46 1 3.6410 2.7866 -5.4681 47 1 5.7979 3.1771 -6.5899 48 1 7.2606 1.2748 -7.1422 49 1 6.5707 -1.0171 -6.5641 50 1 4.4175 -1.4069 -5.4350 51 1 1.0018 -0.6750 -3.1526 52 1 0.9436 0.8617 -2.2469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272528283.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:25 Heat of formation + Delta-G solvation = -8.104154 kcal Electronic energy + Delta-G solvation = -25677.538921 eV Core-core repulsion = 22253.819535 eV Total energy + Delta-G solvation = -3423.719386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83871 -39.68501 -37.92474 -35.90838 -34.42509 -33.19860 -31.77931 -31.14822 -30.90160 -28.62320 -27.67251 -26.46155 -24.53016 -23.52264 -22.93617 -22.51227 -22.07680 -21.41738 -20.59482 -18.47936 -17.69719 -17.02528 -16.92267 -16.57161 -16.43460 -16.08942 -15.93929 -15.65825 -15.11126 -14.79137 -14.58723 -14.38209 -14.24263 -14.09429 -14.00060 -13.69568 -13.57609 -13.33136 -13.11805 -13.01389 -12.84633 -12.63168 -12.50542 -12.42236 -12.27281 -12.12743 -11.97183 -11.78299 -11.70323 -11.66206 -11.49052 -11.42134 -11.33499 -10.98413 -10.54797 -9.78094 -9.72475 -9.27104 -9.25259 -8.19755 -6.31009 0.44116 0.53573 1.39742 1.43362 1.51238 2.41177 2.80068 3.12937 3.17682 3.27718 3.70956 3.74099 3.92025 3.97756 4.07633 4.17862 4.23805 4.26518 4.33153 4.34814 4.42138 4.45083 4.48251 4.53409 4.63463 4.66611 4.70938 4.74232 4.78557 4.81555 4.82285 4.93749 5.01852 5.08539 5.13694 5.14029 5.16928 5.19589 5.24764 5.29859 5.33260 5.43817 5.52692 5.58924 5.65457 5.71838 5.75935 5.86220 5.97294 6.09115 6.13890 6.16692 6.28505 6.57639 6.85853 7.38011 8.91961 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.001941 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.005038 B =14420.028403 C =15129.814370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.095 3.905 3 H 0.062 0.938 4 N -0.682 5.682 5 C 0.077 3.923 6 C -0.091 4.091 7 C 0.025 3.975 8 C -0.544 4.544 9 H 0.060 0.940 10 C -0.003 4.003 11 N -0.934 5.934 12 Si 0.967 3.033 13 H -0.283 1.283 14 H -0.266 1.266 15 H -0.267 1.267 16 C -0.076 4.076 17 H 0.081 0.919 18 C -0.102 4.102 19 C 0.044 3.956 20 N -0.524 5.524 21 C 0.087 3.913 22 C -0.092 4.092 23 C -0.115 4.115 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.130 4.130 27 C -0.122 4.122 28 C 0.043 3.957 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.343 0.657 33 H 0.021 0.979 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.051 0.949 37 H -0.010 1.010 38 H -0.011 1.011 39 H 0.264 0.736 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.126 0.874 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.126 0.874 51 H 0.058 0.942 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.484 -4.341 -31.808 32.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.015 4.015 3 H 0.080 0.920 4 N -0.313 5.313 5 C -0.053 4.053 6 C -0.129 4.129 7 C -0.013 4.013 8 C -0.582 4.582 9 H 0.078 0.922 10 C -0.201 4.201 11 N -0.574 5.574 12 Si 0.791 3.209 13 H -0.208 1.208 14 H -0.191 1.191 15 H -0.192 1.192 16 C -0.095 4.095 17 H 0.100 0.900 18 C -0.140 4.140 19 C -0.084 4.084 20 N -0.248 5.248 21 C -0.040 4.040 22 C -0.092 4.092 23 C -0.133 4.133 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.084 4.084 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.162 0.838 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.008 0.992 38 H 0.007 0.993 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.144 0.856 47 H 0.153 0.847 48 H 0.156 0.844 49 H 0.155 0.845 50 H 0.144 0.856 51 H 0.076 0.924 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.273 -3.574 -31.730 31.932 hybrid contribution -0.808 -0.598 1.130 1.512 sum -0.535 -4.172 -30.600 30.888 Atomic orbital electron populations 1.22499 0.96284 1.02673 1.02286 1.21588 0.93080 0.97134 0.89748 0.91977 1.60522 1.57574 1.09715 1.03481 1.21776 0.98269 0.95089 0.90121 1.21362 1.00200 0.97981 0.93358 1.18969 0.94688 0.94502 0.93091 1.21676 1.43833 0.96894 0.95753 0.92189 1.26030 0.95702 0.95821 1.02544 1.70099 1.49820 1.10706 1.26788 0.85475 0.79218 0.78337 0.77865 1.20789 1.19058 1.19188 1.21878 0.95518 0.99349 0.92782 0.90031 1.22327 0.95331 1.01625 0.94753 1.23207 0.95309 0.94606 0.95267 1.64874 1.05232 1.49366 1.05312 1.21254 0.94228 1.01434 0.87106 1.19870 0.96653 0.93808 0.98878 1.21228 0.97181 0.96638 0.98272 1.21431 0.94512 1.00015 0.98930 1.21462 1.00366 0.92817 1.00132 1.21403 0.96678 0.97832 0.98828 1.21251 0.94913 0.98809 0.99103 1.22975 0.92336 0.99009 0.94129 0.90519 0.91510 0.93926 0.83822 0.96088 0.92753 0.93018 0.93048 0.99171 0.99305 0.92780 0.92849 0.91053 0.93025 0.91475 0.93081 0.89366 0.85618 0.84655 0.84430 0.84509 0.85639 0.92356 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 8.92 71.98 0.64 -2.85 16 2 C 0.09 2.17 1.88 44.92 0.08 2.26 16 3 H 0.06 1.67 7.79 -2.39 -0.02 1.65 16 4 N -0.68 -18.94 5.95 -491.58 -2.93 -21.86 16 5 C 0.08 2.70 5.48 86.30 0.47 3.17 16 6 C -0.09 -3.86 5.41 30.59 0.17 -3.69 16 7 C 0.03 1.37 4.97 29.85 0.15 1.52 16 8 C -0.54 -31.82 9.11 25.60 0.23 -31.58 16 9 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 10 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 11 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 12 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 C -0.08 -1.46 2.77 -9.92 -0.03 -1.49 16 17 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 18 C -0.10 -2.24 6.34 31.86 0.20 -2.04 16 19 C 0.04 0.84 4.98 86.71 0.43 1.27 16 20 N -0.52 -9.82 5.39 -887.20 -4.78 -14.61 16 21 C 0.09 1.35 5.19 85.56 0.44 1.80 16 22 C -0.09 -1.53 4.59 -19.86 -0.09 -1.63 16 23 C -0.11 -1.92 9.70 22.27 0.22 -1.70 16 24 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 25 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 26 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 27 C -0.12 -1.89 8.34 22.27 0.19 -1.71 16 28 C 0.04 0.73 5.87 86.45 0.51 1.24 16 29 H 0.08 1.25 6.54 -2.39 -0.02 1.23 16 30 H 0.07 1.16 8.13 -2.38 -0.02 1.14 16 31 H 0.04 0.96 7.45 -2.39 -0.02 0.95 16 32 H 0.34 8.77 8.47 -89.69 -0.76 8.01 16 33 H 0.02 0.75 7.44 -2.39 -0.02 0.73 16 34 H 0.05 2.03 8.05 -2.39 -0.02 2.01 16 35 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.05 1.44 7.86 -2.38 -0.02 1.42 16 41 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.05 0.88 7.09 -2.39 -0.02 0.86 16 43 H 0.07 1.46 7.72 -2.39 -0.02 1.44 16 44 H 0.05 0.70 7.76 -2.39 -0.02 0.68 16 45 H 0.09 1.25 8.08 -2.39 -0.02 1.24 16 46 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 47 H 0.14 1.51 8.06 -2.92 -0.02 1.49 16 48 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 49 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 50 H 0.13 1.65 7.38 -2.91 -0.02 1.62 16 51 H 0.06 0.82 7.57 -2.39 -0.02 0.80 16 52 H 0.08 1.40 6.37 -2.38 -0.02 1.38 16 Total: -1.00 -66.15 405.49 -0.55 -66.70 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.10 Total: 20.59 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 4.75 Total: -40.12 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -7.42 Total: -94.26 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -66.15 -0.55 -66.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272528283.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.597 kcal (2) G-P(sol) polarization free energy of solvation -66.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds