Wall clock time and date at job start Tue Mar 31 2020 11:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46775 * 2 1 4 4 N 1.46898 * 109.47355 * 239.99833 * 2 1 3 5 5 C 1.46902 * 110.99833 * 85.00135 * 4 2 1 6 6 C 1.53007 * 109.46803 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.46873 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46700 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00803 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99889 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00186 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00030 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 89.99863 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00044 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00037 * 12 10 8 16 16 C 1.53000 * 109.47069 * 119.99273 * 2 1 3 17 17 H 1.09000 * 110.28509 * 60.70947 * 16 2 1 18 18 C 1.54258 * 110.32191 * 182.83076 * 16 2 1 19 19 C 1.54386 * 105.05735 * 118.90071 * 18 16 2 20 20 N 1.48559 * 104.59671 * 23.85255 * 19 18 16 21 21 C 1.46893 * 110.99928 * 200.96140 * 20 19 18 22 22 C 1.50702 * 109.47323 * 69.87404 * 21 20 19 23 23 C 1.38240 * 119.99591 * 269.72793 * 22 21 20 24 24 C 1.38237 * 119.99817 * 179.78701 * 23 22 21 25 25 C 1.38237 * 119.99832 * 0.44080 * 24 23 22 26 26 C 1.38241 * 120.00005 * 359.81305 * 25 24 23 27 27 C 1.38231 * 120.00008 * 359.97278 * 26 25 24 28 28 C 1.48725 * 104.28579 * 320.57253 * 20 19 18 29 29 H 1.09003 * 109.46775 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47809 * 300.00582 * 1 2 3 31 31 H 1.09009 * 109.47250 * 60.00437 * 1 2 3 32 32 H 1.00903 * 110.99717 * 208.95034 * 4 2 1 33 33 H 1.08994 * 109.47559 * 59.99796 * 5 4 2 34 34 H 1.09003 * 109.47152 * 299.99122 * 5 4 2 35 35 H 1.09004 * 109.47180 * 59.99695 * 6 5 4 36 36 H 1.08997 * 109.46702 * 299.99866 * 6 5 4 37 37 H 1.09004 * 109.47139 * 60.00071 * 7 6 5 38 38 H 1.08997 * 109.47675 * 299.99671 * 7 6 5 39 39 H 0.96998 * 120.00124 * 180.02562 * 11 10 8 40 40 H 1.09002 * 110.32332 * 237.78931 * 18 16 2 41 41 H 1.09000 * 110.32821 * 359.90202 * 18 16 2 42 42 H 1.08995 * 110.40883 * 142.63140 * 19 18 16 43 43 H 1.09003 * 110.40624 * 265.06959 * 19 18 16 44 44 H 1.09000 * 109.46845 * 189.86966 * 21 20 19 45 45 H 1.08997 * 109.47005 * 309.87023 * 21 20 19 46 46 H 1.07994 * 120.00456 * 359.97438 * 23 22 21 47 47 H 1.08001 * 120.00477 * 180.27090 * 24 23 22 48 48 H 1.07996 * 119.99906 * 179.83583 * 25 24 23 49 49 H 1.08002 * 119.99972 * 180.02562 * 26 25 24 50 50 H 1.07999 * 120.00125 * 179.97438 * 27 26 25 51 51 H 1.08997 * 110.39243 * 280.64232 * 28 20 19 52 52 H 1.08998 * 110.51020 * 158.14623 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6600 0.4196 -4.7697 8 6 3.1655 -0.3247 -5.9785 9 1 3.4152 -1.3727 -5.9022 10 6 3.3094 0.3322 -7.1823 11 7 3.7501 -0.3175 -8.2375 12 14 2.8783 2.1450 -7.3143 13 1 4.0793 2.9630 -7.0079 14 1 1.7989 2.4689 -6.3473 15 1 2.4141 2.4443 -8.6928 16 6 2.0400 -0.7211 1.2493 17 1 1.6944 -1.7548 1.2566 18 6 3.5807 -0.6710 1.3054 19 6 3.9101 0.0896 2.6079 20 7 2.7112 -0.0987 3.4648 21 6 2.6397 0.9363 4.5047 22 6 2.3198 2.2651 3.8698 23 6 3.3428 3.0939 3.4484 24 6 3.0494 4.3108 2.8620 25 6 1.7331 4.7030 2.7053 26 6 0.7102 3.8766 3.1316 27 6 1.0036 2.6577 3.7139 28 6 1.5658 0.0118 2.5226 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3634 0.5138 -0.8901 32 1 2.9174 -1.1204 -1.0286 33 1 2.7588 1.0462 -2.1182 34 1 1.0871 0.6162 -2.5526 35 1 1.9185 -1.3567 -3.8029 36 1 3.5905 -0.9273 -3.3689 37 1 3.3365 1.2433 -4.5414 38 1 1.6646 0.8133 -4.9750 39 1 3.8516 0.1447 -9.0841 40 1 3.9913 -1.6801 1.3421 41 1 3.9738 -0.1342 0.4420 42 1 4.7905 -0.3396 3.0864 43 1 4.0670 1.1481 2.4007 44 1 1.8593 0.6786 5.2207 45 1 3.5982 1.0010 5.0195 46 1 4.3712 2.7893 3.5745 47 1 3.8485 4.9564 2.5287 48 1 1.5039 5.6549 2.2496 49 1 -0.3182 4.1828 3.0088 50 1 0.2045 2.0122 4.0473 51 1 1.3546 1.0583 2.3025 52 1 0.6831 -0.4763 2.9357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272528286.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:27 Heat of formation + Delta-G solvation = 16.552978 kcal Electronic energy + Delta-G solvation = -26713.327539 eV Core-core repulsion = 23290.677366 eV Total energy + Delta-G solvation = -3422.650172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61693 -38.83181 -36.80284 -34.37881 -32.98982 -31.94190 -31.35438 -30.19377 -29.91387 -27.98553 -26.59243 -25.66698 -23.16015 -22.75796 -22.00584 -21.49550 -20.72409 -20.29963 -19.53324 -17.16841 -16.78637 -16.47186 -16.23020 -15.58795 -15.47257 -15.18356 -14.78621 -14.31757 -14.11629 -13.89202 -13.77687 -13.65732 -13.44466 -13.11293 -12.64675 -12.62167 -12.46649 -12.20494 -12.00367 -11.92451 -11.77949 -11.74245 -11.53693 -11.33123 -11.30317 -11.08063 -10.95984 -10.75184 -10.74956 -10.41887 -9.92231 -9.69979 -9.52464 -9.23144 -9.14424 -9.07816 -8.77583 -8.51298 -8.19425 -6.01667 -3.99159 0.96834 1.04389 3.31506 3.38843 3.39378 3.43072 3.78737 4.18209 4.35285 4.44691 4.47277 4.55131 4.60028 4.66212 4.76365 4.78549 4.92476 5.03732 5.14708 5.22967 5.28445 5.32206 5.34200 5.37196 5.43142 5.47769 5.48109 5.63859 5.65207 5.67152 5.68980 5.76395 5.80205 5.84233 5.93904 5.97737 6.09414 6.11085 6.18375 6.19563 6.21005 6.33897 6.55613 6.59247 6.62906 6.64288 6.68777 6.94800 7.27964 7.39409 7.47221 7.63587 7.83232 8.57979 9.04172 9.61099 11.11986 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.002721 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.773888 B =10287.480565 C =11150.332992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.092 3.908 3 H 0.037 0.963 4 N -0.685 5.685 5 C 0.058 3.942 6 C -0.099 4.099 7 C -0.013 4.013 8 C -0.518 4.518 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.880 3.120 13 H -0.278 1.278 14 H -0.266 1.266 15 H -0.288 1.288 16 C -0.091 4.091 17 H 0.087 0.913 18 C -0.125 4.125 19 C 0.025 3.975 20 N -0.499 5.499 21 C 0.080 3.920 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.107 4.107 28 C 0.028 3.972 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.339 0.661 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.008 0.992 38 H 0.015 0.985 39 H 0.262 0.738 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.122 0.878 50 H 0.121 0.879 51 H 0.064 0.936 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 6.739 30.027 31.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 H 0.055 0.945 4 N -0.318 5.318 5 C -0.071 4.071 6 C -0.137 4.137 7 C -0.050 4.050 8 C -0.556 4.556 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.544 5.544 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.191 1.191 15 H -0.214 1.214 16 C -0.111 4.111 17 H 0.105 0.895 18 C -0.163 4.163 19 C -0.103 4.103 20 N -0.221 5.221 21 C -0.048 4.048 22 C -0.122 4.122 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.125 4.125 28 C -0.100 4.100 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.139 0.861 51 H 0.082 0.918 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.624 5.965 29.965 30.901 hybrid contribution 0.625 2.430 -0.504 2.559 sum -3.999 8.395 29.461 30.894 Atomic orbital electron populations 1.21794 0.94707 1.02275 1.00911 1.21541 0.95898 0.95331 0.89068 0.94463 1.60586 1.33406 1.33720 1.04039 1.22178 1.00273 0.93694 0.90935 1.21440 0.99999 0.99115 0.93146 1.19538 0.96380 0.95209 0.93918 1.21163 1.43352 0.98333 0.92745 0.91008 1.25045 0.94707 0.98097 0.95756 1.69921 1.46993 1.36585 1.00931 0.86773 0.79269 0.85959 0.77242 1.20396 1.19051 1.21392 1.22058 0.94830 1.00713 0.93460 0.89469 1.22398 0.95770 1.01205 0.96932 1.23233 0.94121 0.99492 0.93482 1.65814 1.02800 1.42162 1.11311 1.21375 1.02926 0.85717 0.94826 1.20559 0.93687 0.97325 1.00639 1.21091 0.98765 0.94224 0.98899 1.21191 0.96785 0.96620 0.99172 1.21204 0.92943 0.99860 0.99619 1.21182 0.99381 0.94484 0.98794 1.21070 0.95895 0.96328 0.99233 1.23433 0.94312 1.00465 0.91768 0.91943 0.93071 0.92695 0.84221 0.96076 0.91585 0.91917 0.93130 0.97388 0.96669 0.92794 0.90628 0.91369 0.90196 0.93049 0.89631 0.89951 0.86193 0.86034 0.86059 0.85977 0.86062 0.91815 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.20 37.16 0.34 -1.25 16 2 C 0.09 1.10 1.88 -67.71 -0.13 0.98 16 3 H 0.04 0.49 7.80 -51.93 -0.40 0.09 16 4 N -0.69 -9.77 6.29 -106.72 -0.67 -10.44 16 5 C 0.06 0.97 5.48 -3.82 -0.02 0.95 16 6 C -0.10 -2.01 5.41 -26.73 -0.14 -2.16 16 7 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 8 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 9 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 10 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 11 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 12 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 C -0.09 -0.94 2.76 -89.24 -0.25 -1.18 16 17 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 18 C -0.12 -1.23 5.82 -25.35 -0.15 -1.38 16 19 C 0.02 0.22 6.33 -2.18 -0.01 0.21 16 20 N -0.50 -4.49 5.65 -231.27 -1.31 -5.80 16 21 C 0.08 0.61 5.76 -4.98 -0.03 0.58 16 22 C -0.12 -1.00 3.84 -104.62 -0.40 -1.40 16 23 C -0.11 -0.94 8.04 -39.58 -0.32 -1.26 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 26 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 27 C -0.11 -0.86 7.50 -39.59 -0.30 -1.16 16 28 C 0.03 0.26 4.48 -2.09 -0.01 0.25 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.50 7.19 -51.93 -0.37 0.12 16 31 H 0.05 0.69 7.45 -51.92 -0.39 0.30 16 32 H 0.34 4.60 6.93 -39.29 -0.27 4.33 16 33 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 34 H 0.07 1.13 7.44 -51.93 -0.39 0.74 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 38 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.73 7.07 -51.93 -0.37 0.36 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.48 5.26 -51.93 -0.27 0.21 16 44 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 45 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 46 H 0.12 0.88 7.53 -52.49 -0.40 0.48 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 50 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 51 H 0.06 0.63 4.33 -51.93 -0.22 0.40 16 52 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -31.36 395.39 -12.41 -43.77 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -9.34 Total: 1.74 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -3.15 Total: -25.04 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -1.20 Total: -43.88 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.36 -12.41 -43.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272528286.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.321 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds