Wall clock time and date at job start Tue Mar 31 2020 11:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46775 * 2 1 4 4 N 1.46898 * 109.47355 * 239.99833 * 2 1 3 5 5 C 1.46902 * 110.99833 * 85.00135 * 4 2 1 6 6 C 1.53007 * 109.46803 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.46873 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46700 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00803 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99889 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00186 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00030 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 89.99863 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00044 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00037 * 12 10 8 16 16 C 1.53000 * 109.47069 * 119.99273 * 2 1 3 17 17 H 1.09000 * 110.28509 * 60.70947 * 16 2 1 18 18 C 1.54258 * 110.32191 * 182.83076 * 16 2 1 19 19 C 1.54386 * 105.05735 * 118.90071 * 18 16 2 20 20 N 1.48559 * 104.59671 * 23.85255 * 19 18 16 21 21 C 1.46893 * 110.99928 * 200.96140 * 20 19 18 22 22 C 1.50702 * 109.47323 * 69.87404 * 21 20 19 23 23 C 1.38240 * 119.99591 * 269.72793 * 22 21 20 24 24 C 1.38237 * 119.99817 * 179.78701 * 23 22 21 25 25 C 1.38237 * 119.99832 * 0.44080 * 24 23 22 26 26 C 1.38241 * 120.00005 * 359.81305 * 25 24 23 27 27 C 1.38231 * 120.00008 * 359.97278 * 26 25 24 28 28 C 1.48725 * 104.28579 * 320.57253 * 20 19 18 29 29 H 1.09003 * 109.46775 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47809 * 300.00582 * 1 2 3 31 31 H 1.09009 * 109.47250 * 60.00437 * 1 2 3 32 32 H 1.00903 * 110.99717 * 208.95034 * 4 2 1 33 33 H 1.08994 * 109.47559 * 59.99796 * 5 4 2 34 34 H 1.09003 * 109.47152 * 299.99122 * 5 4 2 35 35 H 1.09004 * 109.47180 * 59.99695 * 6 5 4 36 36 H 1.08997 * 109.46702 * 299.99866 * 6 5 4 37 37 H 1.09004 * 109.47139 * 60.00071 * 7 6 5 38 38 H 1.08997 * 109.47675 * 299.99671 * 7 6 5 39 39 H 0.96998 * 120.00124 * 180.02562 * 11 10 8 40 40 H 1.09002 * 110.32332 * 237.78931 * 18 16 2 41 41 H 1.09000 * 110.32821 * 359.90202 * 18 16 2 42 42 H 1.08995 * 110.40883 * 142.63140 * 19 18 16 43 43 H 1.09003 * 110.40624 * 265.06959 * 19 18 16 44 44 H 1.09000 * 109.46845 * 189.86966 * 21 20 19 45 45 H 1.08997 * 109.47005 * 309.87023 * 21 20 19 46 46 H 1.07994 * 120.00456 * 359.97438 * 23 22 21 47 47 H 1.08001 * 120.00477 * 180.27090 * 24 23 22 48 48 H 1.07996 * 119.99906 * 179.83583 * 25 24 23 49 49 H 1.08002 * 119.99972 * 180.02562 * 26 25 24 50 50 H 1.07999 * 120.00125 * 179.97438 * 27 26 25 51 51 H 1.08997 * 110.39243 * 280.64232 * 28 20 19 52 52 H 1.08998 * 110.51020 * 158.14623 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6600 0.4196 -4.7697 8 6 3.1655 -0.3247 -5.9785 9 1 3.4152 -1.3727 -5.9022 10 6 3.3094 0.3322 -7.1823 11 7 3.7501 -0.3175 -8.2375 12 14 2.8783 2.1450 -7.3143 13 1 4.0793 2.9630 -7.0079 14 1 1.7989 2.4689 -6.3473 15 1 2.4141 2.4443 -8.6928 16 6 2.0400 -0.7211 1.2493 17 1 1.6944 -1.7548 1.2566 18 6 3.5807 -0.6710 1.3054 19 6 3.9101 0.0896 2.6079 20 7 2.7112 -0.0987 3.4648 21 6 2.6397 0.9363 4.5047 22 6 2.3198 2.2651 3.8698 23 6 3.3428 3.0939 3.4484 24 6 3.0494 4.3108 2.8620 25 6 1.7331 4.7030 2.7053 26 6 0.7102 3.8766 3.1316 27 6 1.0036 2.6577 3.7139 28 6 1.5658 0.0118 2.5226 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3634 0.5138 -0.8901 32 1 2.9174 -1.1204 -1.0286 33 1 2.7588 1.0462 -2.1182 34 1 1.0871 0.6162 -2.5526 35 1 1.9185 -1.3567 -3.8029 36 1 3.5905 -0.9273 -3.3689 37 1 3.3365 1.2433 -4.5414 38 1 1.6646 0.8133 -4.9750 39 1 3.8516 0.1447 -9.0841 40 1 3.9913 -1.6801 1.3421 41 1 3.9738 -0.1342 0.4420 42 1 4.7905 -0.3396 3.0864 43 1 4.0670 1.1481 2.4007 44 1 1.8593 0.6786 5.2207 45 1 3.5982 1.0010 5.0195 46 1 4.3712 2.7893 3.5745 47 1 3.8485 4.9564 2.5287 48 1 1.5039 5.6549 2.2496 49 1 -0.3182 4.1828 3.0088 50 1 0.2045 2.0122 4.0473 51 1 1.3546 1.0583 2.3025 52 1 0.6831 -0.4763 2.9357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272528286.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:27 Heat of formation + Delta-G solvation = -2.369736 kcal Electronic energy + Delta-G solvation = -26714.148089 eV Core-core repulsion = 23290.677366 eV Total energy + Delta-G solvation = -3423.470723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.28870 -39.58407 -37.85270 -35.93053 -34.43308 -33.29025 -32.00903 -31.49002 -30.61927 -28.90378 -28.05789 -26.56087 -24.34556 -23.60371 -22.85288 -22.49173 -21.94889 -21.38618 -20.54282 -18.91430 -17.75664 -17.51286 -16.98474 -16.44021 -16.38709 -16.13358 -15.98013 -15.67807 -15.26080 -15.03177 -14.79512 -14.51096 -14.34310 -14.31833 -13.84276 -13.72467 -13.60149 -13.37821 -13.13016 -12.92845 -12.77816 -12.65929 -12.57421 -12.37470 -12.19809 -12.14912 -12.08517 -11.85179 -11.81060 -11.65821 -11.49535 -11.46194 -11.30750 -11.14118 -10.77471 -9.82868 -9.68283 -9.47656 -9.33576 -8.30407 -6.34713 0.37199 0.45035 1.34100 1.36558 1.48837 2.35295 2.78403 3.04578 3.05618 3.20612 3.66297 3.77522 3.79222 3.91161 3.95895 4.10990 4.17320 4.23490 4.24010 4.31137 4.33577 4.42471 4.50229 4.56621 4.58240 4.64939 4.67290 4.72515 4.76033 4.80185 4.83120 4.88999 4.90756 5.00834 5.02563 5.08392 5.08887 5.09980 5.12765 5.18840 5.28590 5.40843 5.51143 5.51503 5.57974 5.59463 5.59829 5.65374 5.87071 6.02061 6.07195 6.14128 6.29060 6.49151 6.73527 7.29840 8.86693 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.002721 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.773888 B =10287.480565 C =11150.332992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.097 3.903 3 H 0.029 0.971 4 N -0.689 5.689 5 C 0.072 3.928 6 C -0.090 4.090 7 C -0.009 4.009 8 C -0.534 4.534 9 H 0.030 0.970 10 C 0.002 3.998 11 N -0.953 5.953 12 Si 0.953 3.047 13 H -0.265 1.265 14 H -0.247 1.247 15 H -0.282 1.282 16 C -0.086 4.086 17 H 0.083 0.917 18 C -0.125 4.125 19 C 0.027 3.973 20 N -0.503 5.503 21 C 0.081 3.919 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.134 4.134 25 C -0.130 4.130 26 C -0.130 4.130 27 C -0.113 4.113 28 C 0.034 3.966 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.342 0.658 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.019 0.981 39 H 0.267 0.733 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.127 0.873 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.136 0.864 50 H 0.133 0.867 51 H 0.061 0.939 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 8.399 31.977 33.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.013 4.013 3 H 0.047 0.953 4 N -0.321 5.321 5 C -0.057 4.057 6 C -0.128 4.128 7 C -0.047 4.047 8 C -0.572 4.572 9 H 0.048 0.952 10 C -0.195 4.195 11 N -0.593 5.593 12 Si 0.776 3.224 13 H -0.190 1.190 14 H -0.170 1.170 15 H -0.208 1.208 16 C -0.105 4.105 17 H 0.101 0.899 18 C -0.164 4.164 19 C -0.101 4.101 20 N -0.225 5.225 21 C -0.047 4.047 22 C -0.127 4.127 23 C -0.140 4.140 24 C -0.152 4.152 25 C -0.149 4.149 26 C -0.148 4.148 27 C -0.132 4.132 28 C -0.094 4.094 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.162 0.838 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.145 0.855 47 H 0.149 0.851 48 H 0.151 0.849 49 H 0.154 0.846 50 H 0.151 0.849 51 H 0.079 0.921 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.459 7.615 31.946 33.291 hybrid contribution 0.916 1.812 -1.105 2.311 sum -4.543 9.427 30.840 32.567 Atomic orbital electron populations 1.21778 0.94085 1.02251 1.01286 1.21546 0.96267 0.94783 0.88728 0.95285 1.60545 1.33766 1.33436 1.04380 1.21890 1.00037 0.93477 0.90273 1.21262 0.99782 0.98240 0.93507 1.19479 0.96187 0.95649 0.93394 1.21515 1.43512 0.97071 0.95077 0.95175 1.26067 0.94452 1.03804 0.95152 1.70077 1.48435 1.39057 1.01777 0.85614 0.79890 0.79029 0.77843 1.19048 1.17038 1.20820 1.21980 0.95082 1.00317 0.93155 0.89872 1.22388 0.95461 1.01384 0.97118 1.23218 0.94558 0.99212 0.93102 1.65829 1.02504 1.42830 1.11330 1.21420 1.03725 0.85052 0.94463 1.20656 0.93810 0.97548 1.00684 1.21270 0.99315 0.94403 0.99037 1.21420 0.97320 0.96991 0.99425 1.21454 0.93071 1.00544 0.99801 1.21440 1.00154 0.94554 0.98639 1.21274 0.96216 0.96570 0.99103 1.23370 0.94690 1.00089 0.91262 0.92139 0.91153 0.93872 0.83824 0.95636 0.91546 0.93213 0.93498 0.96473 0.96276 0.92462 0.90370 0.92350 0.89372 0.93326 0.88730 0.89209 0.85511 0.85127 0.84941 0.84566 0.84885 0.92139 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.20 71.98 0.66 -2.21 16 2 C 0.10 2.17 1.88 44.92 0.08 2.26 16 3 H 0.03 0.72 7.80 -2.39 -0.02 0.70 16 4 N -0.69 -18.85 6.29 -491.56 -3.09 -21.94 16 5 C 0.07 2.33 5.48 86.31 0.47 2.81 16 6 C -0.09 -3.63 5.41 30.60 0.17 -3.47 16 7 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 8 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 9 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 10 C 0.00 0.10 5.47 84.65 0.46 0.56 16 11 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 12 Si 0.95 45.05 27.47 68.60 1.88 46.94 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.25 -10.84 6.54 99.48 0.65 -10.18 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 16 C -0.09 -1.63 2.76 -9.90 -0.03 -1.66 16 17 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 18 C -0.13 -2.31 5.82 31.49 0.18 -2.13 16 19 C 0.03 0.44 6.33 86.45 0.55 0.99 16 20 N -0.50 -8.02 5.65 -885.60 -5.00 -13.02 16 21 C 0.08 1.07 5.76 85.56 0.49 1.56 16 22 C -0.13 -1.86 3.84 -19.86 -0.08 -1.93 16 23 C -0.12 -1.89 8.04 22.27 0.18 -1.71 16 24 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 25 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 27 C -0.11 -1.62 7.50 22.27 0.17 -1.45 16 28 C 0.03 0.56 4.48 86.42 0.39 0.95 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.20 7.19 -2.39 -0.02 1.18 16 31 H 0.04 1.01 7.45 -2.38 -0.02 0.99 16 32 H 0.34 8.98 6.93 -89.69 -0.62 8.36 16 33 H 0.03 0.81 8.05 -2.39 -0.02 0.79 16 34 H 0.07 2.15 7.44 -2.39 -0.02 2.14 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 38 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 39 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.19 7.07 -2.39 -0.02 1.17 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 0.83 5.26 -2.39 -0.01 0.82 16 44 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 45 H 0.09 1.05 8.03 -2.39 -0.02 1.03 16 46 H 0.13 1.69 7.53 -2.91 -0.02 1.67 16 47 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 48 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 49 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 50 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 51 H 0.06 1.06 4.33 -2.39 -0.01 1.05 16 52 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -67.53 395.39 -0.97 -68.50 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.19 Total: 22.93 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 4.74 Total: -42.64 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -7.79 Total: -95.73 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.94 kcal Total: -67.53 -0.97 -68.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272528286.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.132 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds