Wall clock time and date at job start Tue Mar 31 2020 10:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38288 * 119.92408 * 2 1 4 4 C 1.38104 * 120.07517 * 179.97438 * 3 2 1 5 5 C 1.38912 * 119.92404 * 0.02562 * 4 3 2 6 6 N 1.39672 * 120.07469 * 179.97438 * 5 4 3 7 7 C 1.46960 * 111.00096 * 179.97438 * 6 5 4 8 8 C 1.53046 * 109.36538 * 176.81377 * 7 6 5 9 9 N 1.46954 * 109.36835 * 58.39967 * 8 7 6 10 10 C 1.46902 * 111.00388 * 176.81368 * 9 8 7 11 11 C 1.52993 * 109.47396 * 179.97438 * 10 9 8 12 12 C 1.53009 * 109.47023 * 278.56911 * 11 10 9 13 13 C 1.52997 * 109.47400 * 38.56570 * 11 10 9 14 14 C 1.53001 * 109.47420 * 158.56936 * 11 10 9 15 15 C 1.50702 * 109.47159 * 179.97438 * 14 11 10 16 16 H 1.08002 * 119.99793 * 359.97438 * 15 14 11 17 17 C 1.37869 * 119.99911 * 180.02562 * 15 14 11 18 18 N 1.31520 * 120.00156 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47486 * 89.99836 * 19 17 15 21 21 H 1.48505 * 109.47099 * 209.99585 * 19 17 15 22 22 H 1.48496 * 109.47099 * 329.99570 * 19 17 15 23 23 C 1.46960 * 110.87921 * 300.68233 * 9 8 7 24 24 C 1.46964 * 111.00246 * 56.19751 * 6 5 4 25 25 C 1.38912 * 119.84948 * 0.24736 * 5 4 3 26 26 C 1.38105 * 119.92544 * 359.49644 * 25 5 4 27 27 H 1.09003 * 109.47459 * 89.99923 * 1 2 3 28 28 H 1.08997 * 109.47588 * 210.00077 * 1 2 3 29 29 H 1.09000 * 109.47436 * 330.00114 * 1 2 3 30 30 H 1.08002 * 119.96184 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.03947 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.48762 * 56.84418 * 7 6 5 33 33 H 1.08999 * 109.48756 * 296.77996 * 7 6 5 34 34 H 1.09000 * 109.49104 * 178.37391 * 8 7 6 35 35 H 1.09008 * 109.48565 * 298.43350 * 8 7 6 36 36 H 1.09008 * 109.46882 * 299.99498 * 10 9 8 37 37 H 1.08994 * 109.47227 * 59.99348 * 10 9 8 38 38 H 1.08999 * 109.46830 * 96.78748 * 12 11 10 39 39 H 1.08993 * 109.47165 * 216.78536 * 12 11 10 40 40 H 1.08997 * 109.46700 * 336.78842 * 12 11 10 41 41 H 1.09001 * 109.47138 * 59.99949 * 13 11 10 42 42 H 1.09002 * 109.47626 * 180.02562 * 13 11 10 43 43 H 1.09006 * 109.47452 * 300.00145 * 13 11 10 44 44 H 1.09001 * 109.46625 * 299.99749 * 14 11 10 45 45 H 1.08992 * 109.46830 * 59.99738 * 14 11 10 46 46 H 0.97001 * 119.99779 * 179.97438 * 18 17 15 47 47 H 1.08999 * 109.48756 * 299.34972 * 23 9 8 48 48 H 1.08999 * 109.50618 * 179.29736 * 23 9 8 49 49 H 1.08998 * 109.48621 * 303.16149 * 24 6 5 50 50 H 1.09005 * 109.48288 * 63.22162 * 24 6 5 51 51 H 1.08005 * 120.03560 * 179.72760 * 25 5 4 52 52 H 1.08002 * 119.96268 * 180.25010 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2740 0.0001 0.0005 6 7 5.6707 0.0001 0.0005 7 6 6.1974 -1.3719 0.0011 8 6 7.7251 -1.3290 -0.0791 9 7 8.2518 -0.5653 1.0606 10 6 9.7208 -0.5653 1.0606 11 6 10.2308 0.2382 2.2585 12 6 10.1982 1.7306 1.9227 13 6 9.3376 -0.0313 3.4710 14 6 11.6668 -0.1809 2.5797 15 6 12.1694 0.6110 3.7593 16 1 11.5287 1.3406 4.2323 17 6 13.4472 0.4049 4.2340 18 7 14.2275 -0.4832 3.6577 19 14 14.0704 1.3870 5.6957 20 1 13.7537 0.6605 6.9516 21 1 15.5407 1.5632 5.5831 22 1 13.4124 2.7181 5.7144 23 6 7.7251 0.8066 1.0600 24 6 6.1974 0.7634 1.1406 25 6 3.5779 -1.2020 -0.0052 26 6 2.1968 -1.1985 -0.0004 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6549 2.1328 -0.0004 31 1 4.1160 2.1385 0.0010 32 1 5.8031 -1.9132 -0.8589 33 1 5.8955 -1.8769 0.9187 34 1 8.1195 -2.3448 -0.0497 35 1 8.0270 -0.8483 -1.0097 36 1 10.0842 -1.5907 1.1293 37 1 10.0842 -0.1121 0.1383 38 1 9.2829 2.1718 2.3174 39 1 11.0613 2.2228 2.3708 40 1 10.2269 1.8603 0.8409 41 1 9.3608 -1.0945 3.7102 42 1 9.7006 0.5415 4.3244 43 1 8.3145 0.2673 3.2422 44 1 11.6900 -1.2441 2.8190 45 1 12.3032 0.0112 1.7159 46 1 15.1267 -0.6280 3.9915 47 1 8.0270 1.3116 0.1424 48 1 8.1195 1.3483 1.9197 49 1 5.8030 1.7791 1.1115 50 1 5.8955 0.2822 2.0709 51 1 4.1161 -2.1384 -0.0097 52 1 1.6550 -2.1327 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273211813.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:50 Heat of formation + Delta-G solvation = 39.509354 kcal Electronic energy + Delta-G solvation = -27010.715110 eV Core-core repulsion = 23589.060401 eV Total energy + Delta-G solvation = -3421.654709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57426 -38.97153 -37.05873 -34.53481 -32.39505 -31.76528 -31.50157 -30.49139 -28.20285 -27.07490 -26.37223 -25.82294 -24.22296 -23.99070 -22.38111 -21.94740 -21.07733 -19.63895 -18.08649 -17.46480 -16.20614 -15.84074 -15.63520 -15.23401 -14.95770 -14.82722 -14.57107 -14.34953 -13.99624 -13.96863 -13.72161 -13.67697 -13.16648 -12.97357 -12.73972 -12.37989 -12.24692 -12.09931 -11.92688 -11.78906 -11.56441 -11.32130 -11.21540 -10.96760 -10.94898 -10.82438 -10.80633 -10.65453 -10.40975 -10.13241 -9.93381 -9.67663 -9.66274 -9.10412 -8.97711 -8.83311 -8.31704 -8.03399 -7.84607 -5.96488 -3.96538 1.20150 1.24524 3.33187 3.39879 3.42271 3.43947 3.77368 4.12324 4.48812 4.59578 4.71355 4.79121 4.84867 4.97702 5.03641 5.21591 5.22361 5.27711 5.34066 5.38508 5.39483 5.42115 5.47986 5.53076 5.67504 5.68241 5.72822 5.76276 5.84998 5.87253 5.92969 6.02898 6.08483 6.16842 6.18594 6.24371 6.33595 6.45547 6.48093 6.59095 6.63258 6.71476 6.87579 6.90242 7.15781 7.20069 7.24004 7.28326 7.39781 7.44331 7.70881 7.86550 8.03410 8.47628 9.08801 9.66046 11.15013 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031392 B = 0.002395 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.735453 B =11689.266934 C =12069.318731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.095 4.095 4 C -0.139 4.139 5 C 0.114 3.886 6 N -0.491 5.491 7 C 0.056 3.944 8 C 0.053 3.947 9 N -0.531 5.531 10 C 0.067 3.933 11 C -0.060 4.060 12 C -0.143 4.143 13 C -0.116 4.116 14 C 0.036 3.964 15 C -0.507 4.507 16 H 0.059 0.941 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.035 3.965 24 C 0.061 3.939 25 C -0.169 4.169 26 C -0.094 4.094 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.027 0.973 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.015 0.985 45 H 0.013 0.987 46 H 0.259 0.741 47 H 0.037 0.963 48 H 0.114 0.886 49 H 0.081 0.919 50 H 0.052 0.948 51 H 0.127 0.873 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.276 0.313 -8.819 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C -0.114 4.114 4 C -0.159 4.159 5 C 0.016 3.984 6 N -0.206 5.206 7 C -0.071 4.071 8 C -0.075 4.075 9 N -0.256 5.256 10 C -0.060 4.060 11 C -0.060 4.060 12 C -0.200 4.200 13 C -0.174 4.174 14 C -0.001 4.001 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.093 4.093 24 C -0.064 4.064 25 C -0.190 4.190 26 C -0.112 4.112 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.031 0.969 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.132 0.868 49 H 0.099 0.901 50 H 0.070 0.930 51 H 0.144 0.856 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.988 0.242 -8.801 25.552 hybrid contribution 0.603 0.422 0.512 0.897 sum -23.384 0.665 -8.289 24.819 Atomic orbital electron populations 1.20718 0.91460 1.02454 1.01951 1.19810 0.95914 0.93190 1.03307 1.20869 0.93627 0.97448 0.99462 1.20784 0.93962 0.96865 1.04330 1.19023 0.88380 0.93654 0.97333 1.59280 1.04346 1.15351 1.41661 1.22336 0.95234 0.88062 1.01469 1.22156 0.93251 0.99283 0.92832 1.62302 1.09148 1.13144 1.40981 1.22406 0.84719 1.01103 0.97805 1.20650 0.98732 0.93586 0.93044 1.22278 1.01444 0.96896 0.99331 1.21726 0.97230 1.00979 0.97424 1.19143 0.88113 0.96519 0.96361 1.21219 0.98051 1.21189 1.14050 0.92301 1.25021 0.97134 0.95500 0.96991 1.69969 1.08313 1.34216 1.41145 0.86663 0.77928 0.80540 0.83264 1.20793 1.21420 1.19958 1.22851 0.92517 0.91040 1.02896 1.22386 0.95715 0.97840 0.90474 1.21314 0.94639 0.97415 1.05606 1.20864 0.93686 0.97413 0.99278 0.91596 0.91863 0.91834 0.86127 0.85837 0.90081 0.92733 0.90070 0.94350 0.91001 0.95483 0.93891 0.90723 0.94598 0.93830 0.92869 0.93766 0.96628 0.96878 0.93167 0.94445 0.86806 0.90108 0.93006 0.85558 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.00 0.36 -0.35 16 2 C -0.12 -1.11 5.88 -104.59 -0.62 -1.72 16 3 C -0.10 -0.90 9.69 -39.61 -0.38 -1.28 16 4 C -0.14 -1.48 9.19 -39.38 -0.36 -1.84 16 5 C 0.11 1.32 5.64 -83.79 -0.47 0.84 16 6 N -0.49 -5.94 4.76 -170.95 -0.81 -6.75 16 7 C 0.06 0.64 4.29 -3.77 -0.02 0.62 16 8 C 0.05 0.68 5.62 -3.77 -0.02 0.66 16 9 N -0.53 -7.83 3.81 -234.47 -0.89 -8.72 16 10 C 0.07 1.15 4.48 -3.83 -0.02 1.13 16 11 C -0.06 -1.16 0.53 -154.51 -0.08 -1.25 16 12 C -0.14 -2.60 7.48 37.16 0.28 -2.32 16 13 C -0.12 -2.20 7.46 37.16 0.28 -1.92 16 14 C 0.04 0.90 3.91 -27.88 -0.11 0.79 16 15 C -0.51 -13.68 7.18 -34.44 -0.25 -13.93 16 16 H 0.06 1.55 6.16 -52.49 -0.32 1.22 16 17 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.03 0.48 3.70 -3.77 -0.01 0.46 16 24 C 0.06 0.75 5.38 -3.77 -0.02 0.73 16 25 C -0.17 -1.78 8.82 -39.38 -0.35 -2.13 16 26 C -0.09 -0.89 9.69 -39.61 -0.38 -1.27 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 8.08 -51.93 -0.42 -0.05 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 1.21 7.18 -52.49 -0.38 0.83 16 32 H 0.08 0.81 7.15 -51.93 -0.37 0.44 16 33 H 0.05 0.64 7.60 -51.93 -0.39 0.25 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.07 1.28 7.95 -51.92 -0.41 0.87 16 37 H 0.03 0.47 7.53 -51.93 -0.39 0.08 16 38 H 0.04 0.69 5.62 -51.93 -0.29 0.40 16 39 H 0.07 1.55 6.39 -51.93 -0.33 1.21 16 40 H 0.03 0.61 7.21 -51.93 -0.37 0.23 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 1.08 6.62 -51.93 -0.34 0.73 16 43 H 0.04 0.74 5.25 -51.93 -0.27 0.46 16 44 H 0.02 0.42 8.12 -51.93 -0.42 -0.01 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 48 H 0.11 1.65 2.81 -51.93 -0.15 1.50 16 49 H 0.08 0.88 6.82 -51.93 -0.35 0.53 16 50 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.13 1.20 5.81 -52.48 -0.31 0.89 16 52 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -29.39 382.88 -11.38 -40.78 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.89 Total: -0.26 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -2.27 Total: -21.36 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.97 Total: -41.39 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.39 -11.38 -40.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273211813.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.285 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds