Wall clock time and date at job start Tue Mar 31 2020 10:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38288 * 119.92408 * 2 1 4 4 C 1.38104 * 120.07517 * 179.97438 * 3 2 1 5 5 C 1.38912 * 119.92404 * 0.02562 * 4 3 2 6 6 N 1.39672 * 120.07469 * 179.97438 * 5 4 3 7 7 C 1.46960 * 111.00096 * 179.97438 * 6 5 4 8 8 C 1.53046 * 109.36538 * 176.81377 * 7 6 5 9 9 N 1.46954 * 109.36835 * 58.39967 * 8 7 6 10 10 C 1.46902 * 111.00388 * 176.81368 * 9 8 7 11 11 C 1.52993 * 109.47396 * 179.97438 * 10 9 8 12 12 C 1.53009 * 109.47023 * 278.56911 * 11 10 9 13 13 C 1.52997 * 109.47400 * 38.56570 * 11 10 9 14 14 C 1.53001 * 109.47420 * 158.56936 * 11 10 9 15 15 C 1.50702 * 109.47159 * 179.97438 * 14 11 10 16 16 H 1.08002 * 119.99793 * 359.97438 * 15 14 11 17 17 C 1.37869 * 119.99911 * 180.02562 * 15 14 11 18 18 N 1.31520 * 120.00156 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47486 * 89.99836 * 19 17 15 21 21 H 1.48505 * 109.47099 * 209.99585 * 19 17 15 22 22 H 1.48496 * 109.47099 * 329.99570 * 19 17 15 23 23 C 1.46960 * 110.87921 * 300.68233 * 9 8 7 24 24 C 1.46964 * 111.00246 * 56.19751 * 6 5 4 25 25 C 1.38912 * 119.84948 * 0.24736 * 5 4 3 26 26 C 1.38105 * 119.92544 * 359.49644 * 25 5 4 27 27 H 1.09003 * 109.47459 * 89.99923 * 1 2 3 28 28 H 1.08997 * 109.47588 * 210.00077 * 1 2 3 29 29 H 1.09000 * 109.47436 * 330.00114 * 1 2 3 30 30 H 1.08002 * 119.96184 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.03947 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.48762 * 56.84418 * 7 6 5 33 33 H 1.08999 * 109.48756 * 296.77996 * 7 6 5 34 34 H 1.09000 * 109.49104 * 178.37391 * 8 7 6 35 35 H 1.09008 * 109.48565 * 298.43350 * 8 7 6 36 36 H 1.09008 * 109.46882 * 299.99498 * 10 9 8 37 37 H 1.08994 * 109.47227 * 59.99348 * 10 9 8 38 38 H 1.08999 * 109.46830 * 96.78748 * 12 11 10 39 39 H 1.08993 * 109.47165 * 216.78536 * 12 11 10 40 40 H 1.08997 * 109.46700 * 336.78842 * 12 11 10 41 41 H 1.09001 * 109.47138 * 59.99949 * 13 11 10 42 42 H 1.09002 * 109.47626 * 180.02562 * 13 11 10 43 43 H 1.09006 * 109.47452 * 300.00145 * 13 11 10 44 44 H 1.09001 * 109.46625 * 299.99749 * 14 11 10 45 45 H 1.08992 * 109.46830 * 59.99738 * 14 11 10 46 46 H 0.97001 * 119.99779 * 179.97438 * 18 17 15 47 47 H 1.08999 * 109.48756 * 299.34972 * 23 9 8 48 48 H 1.08999 * 109.50618 * 179.29736 * 23 9 8 49 49 H 1.08998 * 109.48621 * 303.16149 * 24 6 5 50 50 H 1.09005 * 109.48288 * 63.22162 * 24 6 5 51 51 H 1.08005 * 120.03560 * 179.72760 * 25 5 4 52 52 H 1.08002 * 119.96268 * 180.25010 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2740 0.0001 0.0005 6 7 5.6707 0.0001 0.0005 7 6 6.1974 -1.3719 0.0011 8 6 7.7251 -1.3290 -0.0791 9 7 8.2518 -0.5653 1.0606 10 6 9.7208 -0.5653 1.0606 11 6 10.2308 0.2382 2.2585 12 6 10.1982 1.7306 1.9227 13 6 9.3376 -0.0313 3.4710 14 6 11.6668 -0.1809 2.5797 15 6 12.1694 0.6110 3.7593 16 1 11.5287 1.3406 4.2323 17 6 13.4472 0.4049 4.2340 18 7 14.2275 -0.4832 3.6577 19 14 14.0704 1.3870 5.6957 20 1 13.7537 0.6605 6.9516 21 1 15.5407 1.5632 5.5831 22 1 13.4124 2.7181 5.7144 23 6 7.7251 0.8066 1.0600 24 6 6.1974 0.7634 1.1406 25 6 3.5779 -1.2020 -0.0052 26 6 2.1968 -1.1985 -0.0004 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6549 2.1328 -0.0004 31 1 4.1160 2.1385 0.0010 32 1 5.8031 -1.9132 -0.8589 33 1 5.8955 -1.8769 0.9187 34 1 8.1195 -2.3448 -0.0497 35 1 8.0270 -0.8483 -1.0097 36 1 10.0842 -1.5907 1.1293 37 1 10.0842 -0.1121 0.1383 38 1 9.2829 2.1718 2.3174 39 1 11.0613 2.2228 2.3708 40 1 10.2269 1.8603 0.8409 41 1 9.3608 -1.0945 3.7102 42 1 9.7006 0.5415 4.3244 43 1 8.3145 0.2673 3.2422 44 1 11.6900 -1.2441 2.8190 45 1 12.3032 0.0112 1.7159 46 1 15.1267 -0.6280 3.9915 47 1 8.0270 1.3116 0.1424 48 1 8.1195 1.3483 1.9197 49 1 5.8030 1.7791 1.1115 50 1 5.8955 0.2822 2.0709 51 1 4.1161 -2.1384 -0.0097 52 1 1.6550 -2.1327 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273211813.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:49 Heat of formation + Delta-G solvation = 24.196335 kcal Electronic energy + Delta-G solvation = -27011.379133 eV Core-core repulsion = 23589.060401 eV Total energy + Delta-G solvation = -3422.318732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49153 -40.07239 -38.21211 -35.86170 -34.26886 -32.63934 -32.39257 -31.39864 -29.36691 -28.87925 -27.92525 -26.83799 -25.42738 -25.05547 -24.03935 -22.78461 -21.91556 -20.61130 -19.64100 -18.41219 -18.29845 -16.81896 -16.66203 -16.35833 -16.21972 -16.05298 -15.68946 -15.61015 -15.03589 -14.86117 -14.64642 -14.53505 -14.41627 -14.30869 -14.13035 -13.97744 -13.40782 -13.11455 -12.95753 -12.84904 -12.72287 -12.63876 -12.48294 -12.40222 -12.34519 -12.21197 -12.08093 -11.98685 -11.81056 -11.75975 -11.55974 -11.33279 -10.84568 -10.65508 -10.49387 -10.43071 -9.83149 -9.24086 -8.65246 -8.13155 -6.19754 0.45668 0.51606 1.41562 1.41899 1.52386 2.44114 2.63674 2.94333 2.98249 3.20648 3.79018 3.90131 3.97471 4.08954 4.10359 4.14393 4.16066 4.24517 4.33051 4.38017 4.39927 4.52208 4.54278 4.56539 4.69967 4.72266 4.76451 4.84778 4.86313 4.87563 4.89874 4.92709 4.93172 5.02120 5.07727 5.15265 5.18147 5.22661 5.28607 5.36706 5.47511 5.51991 5.57037 5.63092 5.68357 5.76938 5.85493 5.89881 5.92422 6.02181 6.12067 6.20142 6.36508 6.39880 6.95074 7.47043 8.99025 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031392 B = 0.002395 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.735453 B =11689.266934 C =12069.318731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.149 4.149 5 C 0.093 3.907 6 N -0.498 5.498 7 C 0.063 3.937 8 C 0.054 3.946 9 N -0.534 5.534 10 C 0.078 3.922 11 C -0.055 4.055 12 C -0.135 4.135 13 C -0.106 4.106 14 C 0.043 3.957 15 C -0.511 4.511 16 H 0.066 0.934 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.956 3.044 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.262 1.262 23 C 0.038 3.962 24 C 0.068 3.932 25 C -0.178 4.178 26 C -0.102 4.102 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.140 0.860 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.030 0.970 42 H 0.038 0.962 43 H 0.070 0.930 44 H -0.016 1.016 45 H -0.016 1.016 46 H 0.259 0.741 47 H 0.034 0.966 48 H 0.108 0.892 49 H 0.095 0.905 50 H 0.044 0.956 51 H 0.132 0.868 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.004 1.323 -8.708 28.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.169 4.169 5 C -0.005 4.005 6 N -0.213 5.213 7 C -0.064 4.064 8 C -0.074 4.074 9 N -0.259 5.259 10 C -0.050 4.050 11 C -0.055 4.055 12 C -0.192 4.192 13 C -0.163 4.163 14 C 0.006 3.994 15 C -0.549 4.549 16 H 0.084 0.916 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.782 3.218 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.186 1.186 23 C -0.089 4.089 24 C -0.058 4.058 25 C -0.199 4.199 26 C -0.121 4.121 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.158 0.842 31 H 0.146 0.854 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.068 0.932 47 H 0.052 0.948 48 H 0.125 0.875 49 H 0.113 0.887 50 H 0.062 0.938 51 H 0.150 0.850 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.748 1.261 -8.693 28.154 hybrid contribution 1.362 0.072 0.422 1.428 sum -25.386 1.333 -8.272 26.733 Atomic orbital electron populations 1.20765 0.89599 1.03363 1.02757 1.20187 0.97403 0.92961 1.02006 1.21155 0.93361 0.98551 0.98972 1.20953 0.94663 0.96815 1.04510 1.19147 0.88039 0.94428 0.98843 1.59311 1.05030 1.15424 1.41554 1.22284 0.93929 0.88212 1.01987 1.22210 0.94304 0.99176 0.91725 1.62255 1.07228 1.14125 1.42275 1.22122 0.86633 0.99796 0.96449 1.20493 0.95492 0.94989 0.94530 1.22181 1.01580 0.95408 0.99996 1.21623 0.98424 0.99877 0.96363 1.19013 0.91263 0.94446 0.94706 1.21591 0.98166 1.20941 1.14250 0.91550 1.25929 0.97640 0.96671 1.00039 1.70113 1.08688 1.36067 1.42997 0.85572 0.77178 0.79458 0.79605 1.20207 1.21370 1.18598 1.22794 0.93701 0.90158 1.02286 1.22302 0.94331 0.98734 0.90403 1.21481 0.95318 0.97405 1.05684 1.21150 0.93481 0.98513 0.98919 0.90737 0.91034 0.90926 0.84235 0.85443 0.88597 0.93046 0.89460 0.94714 0.92253 0.95677 0.91162 0.93397 0.93540 0.95126 0.94335 0.91105 0.99763 0.99778 0.93218 0.94814 0.87477 0.88704 0.93769 0.85000 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.23 0.71 -0.40 16 2 C -0.12 -1.98 5.88 -19.84 -0.12 -2.10 16 3 C -0.10 -1.70 9.69 22.25 0.22 -1.48 16 4 C -0.15 -2.91 9.19 22.40 0.21 -2.71 16 5 C 0.09 2.00 5.64 38.21 0.22 2.21 16 6 N -0.50 -11.25 4.76 -694.78 -3.30 -14.56 16 7 C 0.06 1.34 4.29 86.31 0.37 1.71 16 8 C 0.05 1.32 5.62 86.31 0.49 1.81 16 9 N -0.53 -15.29 3.81 -895.73 -3.41 -18.70 16 10 C 0.08 2.69 4.48 86.30 0.39 3.07 16 11 C -0.05 -2.15 0.53 -52.18 -0.03 -2.18 16 12 C -0.13 -4.83 7.48 71.99 0.54 -4.29 16 13 C -0.11 -3.96 7.46 71.98 0.54 -3.42 16 14 C 0.04 2.24 3.91 29.85 0.12 2.35 16 15 C -0.51 -28.14 7.18 25.60 0.18 -27.96 16 16 H 0.07 3.49 6.16 -2.91 -0.02 3.47 16 17 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 18 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 19 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 C 0.04 0.99 3.70 86.31 0.32 1.31 16 24 C 0.07 1.54 5.38 86.31 0.46 2.00 16 25 C -0.18 -3.46 8.82 22.40 0.20 -3.27 16 26 C -0.10 -1.72 9.69 22.25 0.22 -1.50 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16 29 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16 30 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.13 2.28 7.18 -2.91 -0.02 2.26 16 32 H 0.10 1.76 7.15 -2.39 -0.02 1.75 16 33 H 0.05 1.14 7.60 -2.39 -0.02 1.12 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.06 2.18 7.95 -2.38 -0.02 2.17 16 37 H 0.03 0.87 7.53 -2.39 -0.02 0.85 16 38 H 0.07 2.13 5.62 -2.39 -0.01 2.11 16 39 H 0.05 1.97 6.39 -2.39 -0.02 1.96 16 40 H 0.05 1.54 7.21 -2.39 -0.02 1.52 16 41 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.04 1.53 6.62 -2.39 -0.02 1.52 16 43 H 0.07 2.26 5.25 -2.38 -0.01 2.25 16 44 H -0.02 -0.92 8.12 -2.39 -0.02 -0.94 16 45 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 46 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 47 H 0.03 0.92 8.08 -2.39 -0.02 0.90 16 48 H 0.11 2.89 2.81 -2.39 -0.01 2.88 16 49 H 0.09 1.87 6.82 -2.39 -0.02 1.86 16 50 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 51 H 0.13 2.30 5.81 -2.91 -0.02 2.28 16 52 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -64.19 382.88 1.96 -62.23 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.88 Total: 16.35 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 5.48 Total: -34.72 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -6.43 Total: -90.33 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -64.19 1.96 -62.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273211813.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.425 kcal (2) G-P(sol) polarization free energy of solvation -64.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds